data_2OS2
#
_model_server_result.job_id            Hkwt4IaDfTOlCQ84qpKE5A 
_model_server_result.datetime_utc      '2024-11-05 07:53:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2os2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    2OS2 
#
_exptl.entry_id    2OS2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OS2 
_cell.length_a            100.943 
_cell.length_b            148.886 
_cell.length_c            56.975 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K,M 1 1 
B,D,H,I,J,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C VAL 5 C VAL 35 1_555 C N M3L 6 C M3L 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 C C M3L 6 C M3L 36 1_555 C N LYS 7 C LYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale3 D C VAL 5 D VAL 35 1_555 D N M3L 6 D M3L 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 D C M3L 6 D M3L 36 1_555 D N LYS 7 D LYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
metalc ? metalc1 A NE2 HIS 210 A HIS 188 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc2 A OE1 GLU 212 A GLU 190 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc3 A SG CYS 256 A CYS 234 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc4 A NE2 HIS 262 A HIS 240 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc5 A NE2 HIS 298 A HIS 276 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc6 A SG CYS 328 A CYS 306 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc7 A SG CYS 330 A CYS 308 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
metalc ? metalc8 G O2 OGA . A OGA 500 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc9 G O2' OGA . A OGA 500 1_555 E NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc10 B NE2 HIS 210 B HIS 188 1_555 H NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc11 B OE1 GLU 212 B GLU 190 1_555 H NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc12 B SG CYS 256 B CYS 234 1_555 I ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc13 B NE2 HIS 262 B HIS 240 1_555 I ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc14 B NE2 HIS 298 B HIS 276 1_555 H NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc15 B SG CYS 328 B CYS 306 1_555 I ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc16 B SG CYS 330 B CYS 308 1_555 I ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc17 J O2 OGA . B OGA 500 1_555 H NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc18 J O2' OGA . B OGA 500 1_555 H NI NI . B NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2OS2 
_atom_sites.fract_transf_matrix[1][1]    0.009907 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017552 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NI A 1 501 501 NI NI . 
F 4 ZN A 1 502 502 ZN ZN . 
G 5 OGA A 1 500 500 OGA OGA . 
H 3 NI B 1 501 501 NI NI . 
I 4 ZN B 1 502 502 ZN ZN . 
J 5 OGA B 1 500 500 OGA OGA . 
K 6 HOH A 1 503 1 HOH HOH . 
K 6 HOH A 2 504 2 HOH HOH . 
K 6 HOH A 3 505 8 HOH HOH . 
K 6 HOH A 4 506 10 HOH HOH . 
K 6 HOH A 5 507 11 HOH HOH . 
K 6 HOH A 6 508 12 HOH HOH . 
K 6 HOH A 7 509 14 HOH HOH . 
K 6 HOH A 8 510 15 HOH HOH . 
K 6 HOH A 9 511 16 HOH HOH . 
K 6 HOH A 10 512 20 HOH HOH . 
K 6 HOH A 11 513 21 HOH HOH . 
K 6 HOH A 12 514 23 HOH HOH . 
K 6 HOH A 13 515 24 HOH HOH . 
K 6 HOH A 14 516 26 HOH HOH . 
K 6 HOH A 15 517 30 HOH HOH . 
K 6 HOH A 16 518 32 HOH HOH . 
K 6 HOH A 17 519 34 HOH HOH . 
K 6 HOH A 18 520 44 HOH HOH . 
K 6 HOH A 19 521 52 HOH HOH . 
K 6 HOH A 20 522 54 HOH HOH . 
K 6 HOH A 21 523 55 HOH HOH . 
K 6 HOH A 22 524 61 HOH HOH . 
K 6 HOH A 23 525 63 HOH HOH . 
K 6 HOH A 24 526 64 HOH HOH . 
K 6 HOH A 25 527 68 HOH HOH . 
K 6 HOH A 26 528 69 HOH HOH . 
K 6 HOH A 27 529 70 HOH HOH . 
K 6 HOH A 28 530 74 HOH HOH . 
K 6 HOH A 29 531 75 HOH HOH . 
K 6 HOH A 30 532 79 HOH HOH . 
K 6 HOH A 31 533 85 HOH HOH . 
K 6 HOH A 32 534 87 HOH HOH . 
K 6 HOH A 33 535 93 HOH HOH . 
K 6 HOH A 34 536 94 HOH HOH . 
K 6 HOH A 35 537 95 HOH HOH . 
K 6 HOH A 36 538 100 HOH HOH . 
K 6 HOH A 37 539 103 HOH HOH . 
K 6 HOH A 38 540 105 HOH HOH . 
K 6 HOH A 39 541 110 HOH HOH . 
K 6 HOH A 40 542 120 HOH HOH . 
K 6 HOH A 41 543 121 HOH HOH . 
K 6 HOH A 42 544 124 HOH HOH . 
K 6 HOH A 43 545 130 HOH HOH . 
K 6 HOH A 44 546 131 HOH HOH . 
K 6 HOH A 45 547 132 HOH HOH . 
K 6 HOH A 46 548 141 HOH HOH . 
K 6 HOH A 47 549 146 HOH HOH . 
K 6 HOH A 48 550 154 HOH HOH . 
K 6 HOH A 49 551 156 HOH HOH . 
K 6 HOH A 50 552 162 HOH HOH . 
K 6 HOH A 51 553 164 HOH HOH . 
K 6 HOH A 52 554 167 HOH HOH . 
K 6 HOH A 53 555 171 HOH HOH . 
K 6 HOH A 54 556 175 HOH HOH . 
K 6 HOH A 55 557 182 HOH HOH . 
K 6 HOH A 56 558 186 HOH HOH . 
K 6 HOH A 57 559 189 HOH HOH . 
K 6 HOH A 58 560 194 HOH HOH . 
K 6 HOH A 59 561 196 HOH HOH . 
K 6 HOH A 60 562 201 HOH HOH . 
K 6 HOH A 61 563 210 HOH HOH . 
K 6 HOH A 62 564 211 HOH HOH . 
K 6 HOH A 63 565 212 HOH HOH . 
K 6 HOH A 64 566 219 HOH HOH . 
K 6 HOH A 65 567 220 HOH HOH . 
K 6 HOH A 66 568 225 HOH HOH . 
K 6 HOH A 67 569 226 HOH HOH . 
K 6 HOH A 68 570 228 HOH HOH . 
K 6 HOH A 69 571 230 HOH HOH . 
K 6 HOH A 70 572 233 HOH HOH . 
K 6 HOH A 71 573 234 HOH HOH . 
K 6 HOH A 72 574 236 HOH HOH . 
K 6 HOH A 73 575 237 HOH HOH . 
K 6 HOH A 74 576 238 HOH HOH . 
K 6 HOH A 75 577 239 HOH HOH . 
K 6 HOH A 76 578 240 HOH HOH . 
K 6 HOH A 77 579 241 HOH HOH . 
K 6 HOH A 78 580 242 HOH HOH . 
K 6 HOH A 79 581 243 HOH HOH . 
K 6 HOH A 80 582 245 HOH HOH . 
K 6 HOH A 81 583 247 HOH HOH . 
K 6 HOH A 82 584 251 HOH HOH . 
K 6 HOH A 83 585 252 HOH HOH . 
K 6 HOH A 84 586 253 HOH HOH . 
K 6 HOH A 85 587 254 HOH HOH . 
K 6 HOH A 86 588 255 HOH HOH . 
K 6 HOH A 87 589 256 HOH HOH . 
K 6 HOH A 88 590 258 HOH HOH . 
K 6 HOH A 89 591 259 HOH HOH . 
K 6 HOH A 90 592 260 HOH HOH . 
K 6 HOH A 91 593 261 HOH HOH . 
K 6 HOH A 92 594 272 HOH HOH . 
K 6 HOH A 93 595 273 HOH HOH . 
K 6 HOH A 94 596 274 HOH HOH . 
K 6 HOH A 95 597 277 HOH HOH . 
K 6 HOH A 96 598 280 HOH HOH . 
K 6 HOH A 97 599 283 HOH HOH . 
K 6 HOH A 98 600 285 HOH HOH . 
K 6 HOH A 99 601 286 HOH HOH . 
L 6 HOH B 1 503 3 HOH HOH . 
L 6 HOH B 2 504 4 HOH HOH . 
L 6 HOH B 3 505 5 HOH HOH . 
L 6 HOH B 4 506 6 HOH HOH . 
L 6 HOH B 5 507 7 HOH HOH . 
L 6 HOH B 6 508 13 HOH HOH . 
L 6 HOH B 7 509 19 HOH HOH . 
L 6 HOH B 8 510 22 HOH HOH . 
L 6 HOH B 9 511 27 HOH HOH . 
L 6 HOH B 10 512 28 HOH HOH . 
L 6 HOH B 11 513 29 HOH HOH . 
L 6 HOH B 12 514 31 HOH HOH . 
L 6 HOH B 13 515 33 HOH HOH . 
L 6 HOH B 14 516 35 HOH HOH . 
L 6 HOH B 15 517 36 HOH HOH . 
L 6 HOH B 16 518 37 HOH HOH . 
L 6 HOH B 17 519 40 HOH HOH . 
L 6 HOH B 18 520 41 HOH HOH . 
L 6 HOH B 19 521 42 HOH HOH . 
L 6 HOH B 20 522 43 HOH HOH . 
L 6 HOH B 21 523 47 HOH HOH . 
L 6 HOH B 22 524 49 HOH HOH . 
L 6 HOH B 23 525 51 HOH HOH . 
L 6 HOH B 24 526 53 HOH HOH . 
L 6 HOH B 25 527 57 HOH HOH . 
L 6 HOH B 26 528 58 HOH HOH . 
L 6 HOH B 27 529 65 HOH HOH . 
L 6 HOH B 28 530 66 HOH HOH . 
L 6 HOH B 29 531 67 HOH HOH . 
L 6 HOH B 30 532 71 HOH HOH . 
L 6 HOH B 31 533 73 HOH HOH . 
L 6 HOH B 32 534 77 HOH HOH . 
L 6 HOH B 33 535 78 HOH HOH . 
L 6 HOH B 34 536 80 HOH HOH . 
L 6 HOH B 35 537 81 HOH HOH . 
L 6 HOH B 36 538 83 HOH HOH . 
L 6 HOH B 37 539 86 HOH HOH . 
L 6 HOH B 38 540 89 HOH HOH . 
L 6 HOH B 39 541 96 HOH HOH . 
L 6 HOH B 40 542 97 HOH HOH . 
L 6 HOH B 41 543 99 HOH HOH . 
L 6 HOH B 42 544 101 HOH HOH . 
L 6 HOH B 43 545 104 HOH HOH . 
L 6 HOH B 44 546 108 HOH HOH . 
L 6 HOH B 45 547 115 HOH HOH . 
L 6 HOH B 46 548 116 HOH HOH . 
L 6 HOH B 47 549 118 HOH HOH . 
L 6 HOH B 48 550 125 HOH HOH . 
L 6 HOH B 49 551 128 HOH HOH . 
L 6 HOH B 50 552 133 HOH HOH . 
L 6 HOH B 51 553 134 HOH HOH . 
L 6 HOH B 52 554 135 HOH HOH . 
L 6 HOH B 53 555 137 HOH HOH . 
L 6 HOH B 54 556 138 HOH HOH . 
L 6 HOH B 55 557 139 HOH HOH . 
L 6 HOH B 56 558 140 HOH HOH . 
L 6 HOH B 57 559 142 HOH HOH . 
L 6 HOH B 58 560 144 HOH HOH . 
L 6 HOH B 59 561 145 HOH HOH . 
L 6 HOH B 60 562 149 HOH HOH . 
L 6 HOH B 61 563 151 HOH HOH . 
L 6 HOH B 62 564 153 HOH HOH . 
L 6 HOH B 63 565 163 HOH HOH . 
L 6 HOH B 64 566 168 HOH HOH . 
L 6 HOH B 65 567 169 HOH HOH . 
L 6 HOH B 66 568 170 HOH HOH . 
L 6 HOH B 67 569 176 HOH HOH . 
L 6 HOH B 68 570 178 HOH HOH . 
L 6 HOH B 69 571 179 HOH HOH . 
L 6 HOH B 70 572 193 HOH HOH . 
L 6 HOH B 71 573 195 HOH HOH . 
L 6 HOH B 72 574 202 HOH HOH . 
L 6 HOH B 73 575 207 HOH HOH . 
L 6 HOH B 74 576 213 HOH HOH . 
L 6 HOH B 75 577 214 HOH HOH . 
L 6 HOH B 76 578 215 HOH HOH . 
L 6 HOH B 77 579 216 HOH HOH . 
L 6 HOH B 78 580 217 HOH HOH . 
L 6 HOH B 79 581 218 HOH HOH . 
L 6 HOH B 80 582 221 HOH HOH . 
L 6 HOH B 81 583 222 HOH HOH . 
L 6 HOH B 82 584 223 HOH HOH . 
L 6 HOH B 83 585 224 HOH HOH . 
L 6 HOH B 84 586 227 HOH HOH . 
L 6 HOH B 85 587 229 HOH HOH . 
L 6 HOH B 86 588 231 HOH HOH . 
L 6 HOH B 87 589 232 HOH HOH . 
L 6 HOH B 88 590 246 HOH HOH . 
L 6 HOH B 89 591 248 HOH HOH . 
L 6 HOH B 90 592 249 HOH HOH . 
L 6 HOH B 91 593 250 HOH HOH . 
L 6 HOH B 92 594 262 HOH HOH . 
L 6 HOH B 93 595 263 HOH HOH . 
L 6 HOH B 94 596 264 HOH HOH . 
L 6 HOH B 95 597 265 HOH HOH . 
L 6 HOH B 96 598 266 HOH HOH . 
L 6 HOH B 97 599 267 HOH HOH . 
L 6 HOH B 98 600 268 HOH HOH . 
L 6 HOH B 99 601 269 HOH HOH . 
L 6 HOH B 100 602 270 HOH HOH . 
L 6 HOH B 101 603 271 HOH HOH . 
L 6 HOH B 102 604 276 HOH HOH . 
L 6 HOH B 103 605 278 HOH HOH . 
L 6 HOH B 104 606 279 HOH HOH . 
L 6 HOH B 105 607 281 HOH HOH . 
L 6 HOH B 106 608 282 HOH HOH . 
L 6 HOH B 107 609 284 HOH HOH . 
L 6 HOH B 108 610 287 HOH HOH . 
M 6 HOH C 1 235 235 HOH HOH . 
M 6 HOH C 2 275 275 HOH HOH . 
N 6 HOH D 1 244 244 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -38.87 
_atom_site.Cartn_y               -54.914 
_atom_site.Cartn_z               4.277 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.5 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#