data_2OSD # _model_server_result.job_id jtT7SLqYojiYYRm3AjUpPQ _model_server_result.datetime_utc '2024-10-20 00:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2osd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":167}' # _entry.id 2OSD # _exptl.entry_id 2OSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OSD _cell.length_a 55.786 _cell.length_b 55.786 _cell.length_c 118.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 59.495 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 29 A PRO 28 1_555 A N MSE 30 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 30 A MSE 29 1_555 A N PRO 31 A PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C LYS 62 A LYS 61 1_555 A N MSE 63 A MSE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 63 A MSE 62 1_555 A N LEU 64 A LEU 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C LEU 78 A LEU 77 1_555 A N MSE 79 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 79 A MSE 78 1_555 A N ASN 80 A ASN 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OE1 GLU 20 A GLU 19 5_555 B CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc2 A OE2 GLU 20 A GLU 19 5_555 B CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A OE2 GLU 20 A GLU 19 5_555 C CA CA . A CA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A OE2 GLU 24 A GLU 23 5_555 C CA CA . A CA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 A OE1 GLU 24 A GLU 23 5_555 C CA CA . A CA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc6 A ND1 HIS 117 A HIS 116 1_555 E ZN ZN . A ZN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc7 A OE2 GLU 129 A GLU 128 1_555 B CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc8 A OE2 GLU 130 A GLU 129 1_555 B CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 A OE2 GLU 130 A GLU 129 1_555 C CA CA . A CA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc10 A OE1 GLU 130 A GLU 129 1_555 C CA CA . A CA 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc11 A OE2 GLU 140 A GLU 139 1_555 E ZN ZN . A ZN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc12 A SG CYS 143 A CYS 142 1_555 E ZN ZN . A ZN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc13 A SG CYS 151 A CYS 150 1_555 E ZN ZN . A ZN 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc14 B CA CA . A CA 163 1_555 I O HOH . A HOH 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc15 B CA CA . A CA 163 1_555 I O HOH . A HOH 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc16 B CA CA . A CA 163 1_555 I O HOH . A HOH 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc17 C CA CA . A CA 164 1_555 I O HOH . A HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc18 C CA CA . A CA 164 1_555 I O HOH . A HOH 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc19 C CA CA . A CA 164 1_555 I O HOH . A HOH 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 2OSD _atom_sites.fract_transf_matrix[1][1] 0.01793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 163 1 CA CA . C 2 CA A 1 164 2 CA CA . D 3 CL A 1 165 3 CL CL . E 4 ZN A 1 166 4 ZN ZN . F 5 EDO A 1 167 5 EDO EDO . G 5 EDO A 1 168 6 EDO EDO . H 5 EDO A 1 169 7 EDO EDO . I 6 HOH A 1 170 8 HOH HOH . I 6 HOH A 2 171 9 HOH HOH . I 6 HOH A 3 172 10 HOH HOH . I 6 HOH A 4 173 11 HOH HOH . I 6 HOH A 5 174 12 HOH HOH . I 6 HOH A 6 175 13 HOH HOH . I 6 HOH A 7 176 14 HOH HOH . I 6 HOH A 8 177 15 HOH HOH . I 6 HOH A 9 178 16 HOH HOH . I 6 HOH A 10 179 17 HOH HOH . I 6 HOH A 11 180 18 HOH HOH . I 6 HOH A 12 181 19 HOH HOH . I 6 HOH A 13 182 20 HOH HOH . I 6 HOH A 14 183 21 HOH HOH . I 6 HOH A 15 184 22 HOH HOH . I 6 HOH A 16 185 23 HOH HOH . I 6 HOH A 17 186 24 HOH HOH . I 6 HOH A 18 187 25 HOH HOH . I 6 HOH A 19 188 26 HOH HOH . I 6 HOH A 20 189 27 HOH HOH . I 6 HOH A 21 190 28 HOH HOH . I 6 HOH A 22 191 29 HOH HOH . I 6 HOH A 23 192 30 HOH HOH . I 6 HOH A 24 193 31 HOH HOH . I 6 HOH A 25 194 32 HOH HOH . I 6 HOH A 26 195 33 HOH HOH . I 6 HOH A 27 196 34 HOH HOH . I 6 HOH A 28 197 35 HOH HOH . I 6 HOH A 29 198 36 HOH HOH . I 6 HOH A 30 199 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 5.781 1.405 23.275 1 69.9 ? C1 EDO 167 A 1 HETATM 2 O O1 EDO . . . F 5 4.564 1.299 24.022 1 63.56 ? O1 EDO 167 A 1 HETATM 3 C C2 EDO . . . F 5 6.851 0.699 24.098 1 71.77 ? C2 EDO 167 A 1 HETATM 4 O O2 EDO . . . F 5 6.409 -0.64 24.393 1 67.13 ? O2 EDO 167 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #