data_2OU7 # _model_server_result.job_id XSZ-BgAaRjPZGsg1NLfbCQ _model_server_result.datetime_utc '2024-10-18 04:28:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ou7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":500}' # _entry.id 2OU7 # _exptl.entry_id 2OU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OU7 _cell.length_a 65.958 _cell.length_b 65.958 _cell.length_c 154.045 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 51.348333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 93 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc2 A OE1 GLU 91 A GLU 101 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc3 A OD1 ASP 184 A ASP 194 1_555 F MG MG . A MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc4 A SG CYS 202 A CYS 212 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc5 A SG CYS 245 A CYS 255 5_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc6 G O2A ANP . A ANP 500 1_555 E MG MG . A MG 504 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc7 G O3' ANP . A ANP 500 1_555 E MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? metalc ? metalc8 B ZN ZN . A ZN 501 1_555 C O ACT . A ACT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 19 n n PG O2G ANP sing 20 n n PG O3G ANP sing 21 n n PG N3B ANP sing 22 n n O2G HOG2 ANP sing 23 n n O3G HOG3 ANP sing 24 n n PB O1B ANP doub 25 n n PB O2B ANP sing 26 n n PB N3B ANP sing 27 n n PB O3A ANP sing 28 n n O2B HOB2 ANP sing 29 n n N3B HNB1 ANP sing 30 n n PA O1A ANP doub 31 n n PA O2A ANP sing 32 n n PA O3A ANP sing 33 n n PA O5' ANP sing 34 n n O2A HOA2 ANP sing 35 n n O5' C5' ANP sing 36 n n C5' C4' ANP sing 37 n n C5' "H5'1" ANP sing 38 n n C5' "H5'2" ANP sing 39 n n C4' O4' ANP sing 40 n n C4' C3' ANP sing 41 n n C4' H4' ANP sing 42 n n O4' C1' ANP sing 43 n n C3' O3' ANP sing 44 n n C3' C2' ANP sing 45 n n C3' H3' ANP sing 46 n n O3' HO3' ANP sing 47 n n C2' O2' ANP sing 48 n n C2' C1' ANP sing 49 n n C2' H2' ANP sing 50 n n O2' HO2' ANP sing 51 n n C1' N9 ANP sing 52 n n C1' H1' ANP sing 53 n n N9 C8 ANP sing 54 n y N9 C4 ANP sing 55 n y C8 N7 ANP doub 56 n y C8 H8 ANP sing 57 n n N7 C5 ANP sing 58 n y C5 C6 ANP sing 59 n y C5 C4 ANP doub 60 n y C6 N6 ANP sing 61 n n C6 N1 ANP doub 62 n y N6 HN61 ANP sing 63 n n N6 HN62 ANP sing 64 n n N1 C2 ANP sing 65 n y C2 N3 ANP doub 66 n y C2 H2 ANP sing 67 n n N3 C4 ANP sing 68 n y # _atom_sites.entry_id 2OU7 _atom_sites.fract_transf_matrix[1][1] 0.015161 _atom_sites.fract_transf_matrix[1][2] 0.008753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 ACT A 1 502 502 ACT ACE . D 3 ACT A 1 503 503 ACT ACE . E 4 MG A 1 504 504 MG MG . F 4 MG A 1 505 505 MG MG . G 5 ANP A 1 500 500 ANP LIG . H 6 HOH A 1 506 3 HOH HOH . H 6 HOH A 2 507 4 HOH HOH . H 6 HOH A 3 508 5 HOH HOH . H 6 HOH A 4 509 6 HOH HOH . H 6 HOH A 5 510 8 HOH HOH . H 6 HOH A 6 511 9 HOH HOH . H 6 HOH A 7 512 10 HOH HOH . H 6 HOH A 8 513 11 HOH HOH . H 6 HOH A 9 514 12 HOH HOH . H 6 HOH A 10 515 13 HOH HOH . H 6 HOH A 11 516 14 HOH HOH . H 6 HOH A 12 517 15 HOH HOH . H 6 HOH A 13 518 16 HOH HOH . H 6 HOH A 14 519 18 HOH HOH . H 6 HOH A 15 520 19 HOH HOH . H 6 HOH A 16 521 20 HOH HOH . H 6 HOH A 17 522 21 HOH HOH . H 6 HOH A 18 523 22 HOH HOH . H 6 HOH A 19 524 25 HOH HOH . H 6 HOH A 20 525 26 HOH HOH . H 6 HOH A 21 526 27 HOH HOH . H 6 HOH A 22 527 28 HOH HOH . H 6 HOH A 23 528 30 HOH HOH . H 6 HOH A 24 529 31 HOH HOH . H 6 HOH A 25 530 32 HOH HOH . H 6 HOH A 26 531 33 HOH HOH . H 6 HOH A 27 532 34 HOH HOH . H 6 HOH A 28 533 35 HOH HOH . H 6 HOH A 29 534 37 HOH HOH . H 6 HOH A 30 535 38 HOH HOH . H 6 HOH A 31 536 39 HOH HOH . H 6 HOH A 32 537 41 HOH HOH . H 6 HOH A 33 538 42 HOH HOH . H 6 HOH A 34 539 43 HOH HOH . H 6 HOH A 35 540 44 HOH HOH . H 6 HOH A 36 541 45 HOH HOH . H 6 HOH A 37 542 46 HOH HOH . H 6 HOH A 38 543 47 HOH HOH . H 6 HOH A 39 544 48 HOH HOH . H 6 HOH A 40 545 49 HOH HOH . H 6 HOH A 41 546 50 HOH HOH . H 6 HOH A 42 547 51 HOH HOH . H 6 HOH A 43 548 53 HOH HOH . H 6 HOH A 44 549 54 HOH HOH . H 6 HOH A 45 550 55 HOH HOH . H 6 HOH A 46 551 56 HOH HOH . H 6 HOH A 47 552 59 HOH HOH . H 6 HOH A 48 553 60 HOH HOH . H 6 HOH A 49 554 61 HOH HOH . H 6 HOH A 50 555 62 HOH HOH . H 6 HOH A 51 556 63 HOH HOH . H 6 HOH A 52 557 64 HOH HOH . H 6 HOH A 53 558 65 HOH HOH . H 6 HOH A 54 559 66 HOH HOH . H 6 HOH A 55 560 69 HOH HOH . H 6 HOH A 56 561 71 HOH HOH . H 6 HOH A 57 562 72 HOH HOH . H 6 HOH A 58 563 73 HOH HOH . H 6 HOH A 59 564 74 HOH HOH . H 6 HOH A 60 565 75 HOH HOH . H 6 HOH A 61 566 76 HOH HOH . H 6 HOH A 62 567 77 HOH HOH . H 6 HOH A 63 568 78 HOH HOH . H 6 HOH A 64 569 81 HOH HOH . H 6 HOH A 65 570 82 HOH HOH . H 6 HOH A 66 571 83 HOH HOH . H 6 HOH A 67 572 84 HOH HOH . H 6 HOH A 68 573 88 HOH HOH . H 6 HOH A 69 574 89 HOH HOH . H 6 HOH A 70 575 90 HOH HOH . H 6 HOH A 71 576 91 HOH HOH . H 6 HOH A 72 577 92 HOH HOH . H 6 HOH A 73 578 93 HOH HOH . H 6 HOH A 74 579 94 HOH HOH . H 6 HOH A 75 580 97 HOH HOH . H 6 HOH A 76 581 105 HOH HOH . H 6 HOH A 77 582 108 HOH HOH . H 6 HOH A 78 583 110 HOH HOH . H 6 HOH A 79 584 111 HOH HOH . H 6 HOH A 80 585 112 HOH HOH . H 6 HOH A 81 586 114 HOH HOH . H 6 HOH A 82 587 116 HOH HOH . H 6 HOH A 83 588 117 HOH HOH . H 6 HOH A 84 589 118 HOH HOH . H 6 HOH A 85 590 120 HOH HOH . H 6 HOH A 86 591 121 HOH HOH . H 6 HOH A 87 592 122 HOH HOH . H 6 HOH A 88 593 124 HOH HOH . H 6 HOH A 89 594 125 HOH HOH . H 6 HOH A 90 595 127 HOH HOH . H 6 HOH A 91 596 128 HOH HOH . H 6 HOH A 92 597 129 HOH HOH . H 6 HOH A 93 598 130 HOH HOH . H 6 HOH A 94 599 131 HOH HOH . H 6 HOH A 95 600 134 HOH HOH . H 6 HOH A 96 601 135 HOH HOH . H 6 HOH A 97 602 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . A . G 5 34.661 9.759 31.55 0.4 84.74 ? PG ANP 500 A 1 HETATM 2 P PG ANP . B . G 5 38.23 6.326 37.628 0.6 77.6 ? PG ANP 500 A 1 HETATM 3 O O1G ANP . A . G 5 34.659 8.802 32.769 0.4 84.56 ? O1G ANP 500 A 1 HETATM 4 O O1G ANP . B . G 5 37.133 6.22 38.703 0.6 77.58 ? O1G ANP 500 A 1 HETATM 5 O O2G ANP . A . G 5 35.486 9.237 30.35 0.4 84.69 ? O2G ANP 500 A 1 HETATM 6 O O2G ANP . B . G 5 39.644 6.237 38.238 0.6 78 ? O2G ANP 500 A 1 HETATM 7 O O3G ANP . A . G 5 33.421 10.671 31.298 0.4 84.8 ? O3G ANP 500 A 1 HETATM 8 O O3G ANP . B . G 5 37.967 5.826 36.171 0.6 77.51 ? O3G ANP 500 A 1 HETATM 9 P PB ANP . A . G 5 37.347 9.933 32.77 0.4 85.39 ? PB ANP 500 A 1 HETATM 10 P PB ANP . B . G 5 37.165 8.857 36.515 0.6 80.74 ? PB ANP 500 A 1 HETATM 11 O O1B ANP . A . G 5 37.292 8.369 32.903 0.4 85.18 ? O1B ANP 500 A 1 HETATM 12 O O1B ANP . B . G 5 35.746 8.256 36.221 0.6 79.8 ? O1B ANP 500 A 1 HETATM 13 O O2B ANP . A . G 5 38.158 10.575 31.585 0.4 85.05 ? O2B ANP 500 A 1 HETATM 14 O O2B ANP . B . G 5 37.33 10.176 37.356 0.6 79.64 ? O2B ANP 500 A 1 HETATM 15 N N3B ANP . A . G 5 35.908 10.685 32.197 0.4 84.92 ? N3B ANP 500 A 1 HETATM 16 N N3B ANP . B . G 5 38.115 8.002 37.675 0.6 79.27 ? N3B ANP 500 A 1 HETATM 17 P PA ANP . A . G 5 39.611 10.365 34.158 0.4 86.8 ? PA ANP 500 A 1 HETATM 18 P PA ANP . B . G 5 39.534 9.192 35.022 0.6 85.1 ? PA ANP 500 A 1 HETATM 19 O O1A ANP . A . G 5 40.222 11.612 33.436 0.4 86.4 ? O1A ANP 500 A 1 HETATM 20 O O1A ANP . B . G 5 39.788 9.621 33.533 0.6 85.45 ? O1A ANP 500 A 1 HETATM 21 O O2A ANP . A . G 5 39.974 8.946 33.63 0.4 86.93 ? O2A ANP 500 A 1 HETATM 22 O O2A ANP . B . G 5 40.12 7.839 35.53 0.6 84.71 ? O2A ANP 500 A 1 HETATM 23 O O3A ANP . A . G 5 38.016 10.622 34.065 0.4 85.77 ? O3A ANP 500 A 1 HETATM 24 O O3A ANP . B . G 5 37.913 9.236 35.132 0.6 82.61 ? O3A ANP 500 A 1 HETATM 25 O O5' ANP . A . G 5 40.112 10.49 35.675 0.4 86.29 ? O5' ANP 500 A 1 HETATM 26 O O5' ANP . B . G 5 40.104 10.431 35.87 0.6 85.28 ? O5' ANP 500 A 1 HETATM 27 C C5' ANP . . . G 5 41.473 10.89 35.859 1 85.92 ? C5' ANP 500 A 1 HETATM 28 C C4' ANP . . . G 5 42.252 10.336 37.079 1 85.85 ? C4' ANP 500 A 1 HETATM 29 O O4' ANP . . . G 5 43.117 11.392 37.534 1 86.04 ? O4' ANP 500 A 1 HETATM 30 C C3' ANP . . . G 5 41.448 9.844 38.32 1 85.22 ? C3' ANP 500 A 1 HETATM 31 O O3' ANP . . . G 5 41.178 8.459 38.393 1 84.65 ? O3' ANP 500 A 1 HETATM 32 C C2' ANP . . . G 5 42.349 10.271 39.476 1 85.18 ? C2' ANP 500 A 1 HETATM 33 O O2' ANP . . . G 5 43.471 9.413 39.601 1 84.59 ? O2' ANP 500 A 1 HETATM 34 C C1' ANP . . . G 5 42.648 11.62 38.844 1 85.41 ? C1' ANP 500 A 1 HETATM 35 N N9 ANP . . . G 5 42.418 12.897 39.512 1 84.61 ? N9 ANP 500 A 1 HETATM 36 C C8 ANP . . . G 5 41.583 13.896 39.032 1 84.18 ? C8 ANP 500 A 1 HETATM 37 N N7 ANP . . . G 5 41.517 14.954 39.8 1 83.48 ? N7 ANP 500 A 1 HETATM 38 C C5 ANP . . . G 5 42.368 14.633 40.852 1 82.94 ? C5 ANP 500 A 1 HETATM 39 C C6 ANP . . . G 5 42.741 15.342 42.002 1 81.69 ? C6 ANP 500 A 1 HETATM 40 N N6 ANP . . . G 5 42.258 16.554 42.242 1 80.51 ? N6 ANP 500 A 1 HETATM 41 N N1 ANP . . . G 5 43.6 14.78 42.873 1 81.71 ? N1 ANP 500 A 1 HETATM 42 C C2 ANP . . . G 5 44.078 13.554 42.621 1 82.73 ? C2 ANP 500 A 1 HETATM 43 N N3 ANP . . . G 5 43.8 12.778 41.562 1 83.06 ? N3 ANP 500 A 1 HETATM 44 C C4 ANP . . . G 5 42.928 13.382 40.702 1 83.48 ? C4 ANP 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #