data_2OV4 # _model_server_result.job_id kbQqK0IJ8d_SG_RZBSjmlQ _model_server_result.datetime_utc '2024-11-25 08:55:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ov4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 2OV4 # _exptl.entry_id 2OV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.161 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OV4 _cell.length_a 62.178 _cell.length_b 62.178 _cell.length_c 220.882 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 62.178 62.178 110.441 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 1 A MET 1 1_555 B CS CS . A CS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.888 ? metalc ? metalc2 A O GLN 30 A GLN 30 1_555 B CS CS . A CS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc3 A O TYR 33 A TYR 33 1_555 B CS CS . A CS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc4 A O GLN 74 A GLN 74 1_555 B CS CS . A CS 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.508 ? # _chem_comp.formula 'C10 H17 N5 O16 P4' _chem_comp.formula_weight 587.161 _chem_comp.id AQP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TETRAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 AQP sing 27 n n N6 HN61 AQP sing 28 n n N6 HN62 AQP sing 29 n n C6 N1 AQP doub 30 n y C6 C5 AQP sing 31 n y N1 C2 AQP sing 32 n y C2 N3 AQP doub 33 n y C2 H2 AQP sing 34 n n N3 C4 AQP sing 35 n y C4 N9 AQP sing 36 n y C4 C5 AQP doub 37 n y N9 C8 AQP sing 38 n y N9 C1' AQP sing 39 n n C8 N7 AQP doub 40 n y C8 H8 AQP sing 41 n n N7 C5 AQP sing 42 n y C1' O4' AQP sing 43 n n C1' C2' AQP sing 44 n n C1' H1' AQP sing 45 n n O4' C4' AQP sing 46 n n C4' C5' AQP sing 47 n n C4' C3' AQP sing 48 n n C4' H4' AQP sing 49 n n C5' O5' AQP sing 50 n n C5' "H5'1" AQP sing 51 n n C5' "H5'2" AQP sing 52 n n O5' PA AQP sing 53 n n PA O1A AQP sing 54 n n PA O2A AQP doub 55 n n PA O3A AQP sing 56 n n O1A H1A AQP sing 57 n n O3A PB AQP sing 58 n n PB O2B AQP sing 59 n n PB O1B AQP doub 60 n n PB O3B AQP sing 61 n n O2B H2B AQP sing 62 n n O3B PG AQP sing 63 n n PG O2G AQP sing 64 n n PG O1G AQP doub 65 n n PG O3G AQP sing 66 n n O2G H2G AQP sing 67 n n O3G PD AQP sing 68 n n PD O2D AQP sing 69 n n PD O1D AQP sing 70 n n PD O3D AQP doub 71 n n O2D H2D AQP sing 72 n n O1D H1D AQP sing 73 n n C3' O3' AQP sing 74 n n C3' C2' AQP sing 75 n n C3' H3' AQP sing 76 n n O3' H1 AQP sing 77 n n C2' O2' AQP sing 78 n n C2' H2' AQP sing 79 n n O2' H3 AQP sing 80 n n # _atom_sites.entry_id 2OV4 _atom_sites.fract_transf_matrix[1][1] 0.016083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CS A 1 900 900 CS CS . C 3 AQP A 1 400 400 AQP AQP . D 4 ANL A 1 950 950 ANL HAI . E 5 GOL A 1 930 930 GOL GOL . F 5 GOL A 1 940 940 GOL GOL . G 6 HOH A 1 502 502 HOH HOH . G 6 HOH A 2 503 503 HOH HOH . G 6 HOH A 3 504 504 HOH HOH . G 6 HOH A 4 505 505 HOH HOH . G 6 HOH A 5 506 506 HOH HOH . G 6 HOH A 6 507 507 HOH HOH . G 6 HOH A 7 508 508 HOH HOH . G 6 HOH A 8 509 509 HOH HOH . G 6 HOH A 9 510 510 HOH HOH . G 6 HOH A 10 511 511 HOH HOH . G 6 HOH A 11 512 512 HOH HOH . G 6 HOH A 12 513 513 HOH HOH . G 6 HOH A 13 514 514 HOH HOH . G 6 HOH A 14 515 515 HOH HOH . G 6 HOH A 15 516 516 HOH HOH . G 6 HOH A 16 517 517 HOH HOH . G 6 HOH A 17 518 518 HOH HOH . G 6 HOH A 18 519 519 HOH HOH . G 6 HOH A 19 520 520 HOH HOH . G 6 HOH A 20 521 521 HOH HOH . G 6 HOH A 21 522 522 HOH HOH . G 6 HOH A 22 523 523 HOH HOH . G 6 HOH A 23 524 524 HOH HOH . G 6 HOH A 24 525 525 HOH HOH . G 6 HOH A 25 526 526 HOH HOH . G 6 HOH A 26 527 527 HOH HOH . G 6 HOH A 27 528 528 HOH HOH . G 6 HOH A 28 529 529 HOH HOH . G 6 HOH A 29 530 530 HOH HOH . G 6 HOH A 30 531 531 HOH HOH . G 6 HOH A 31 533 533 HOH HOH . G 6 HOH A 32 535 535 HOH HOH . G 6 HOH A 33 536 536 HOH HOH . G 6 HOH A 34 537 537 HOH HOH . G 6 HOH A 35 538 538 HOH HOH . G 6 HOH A 36 539 539 HOH HOH . G 6 HOH A 37 540 540 HOH HOH . G 6 HOH A 38 541 541 HOH HOH . G 6 HOH A 39 542 542 HOH HOH . G 6 HOH A 40 543 543 HOH HOH . G 6 HOH A 41 544 544 HOH HOH . G 6 HOH A 42 545 545 HOH HOH . G 6 HOH A 43 546 546 HOH HOH . G 6 HOH A 44 547 547 HOH HOH . G 6 HOH A 45 548 548 HOH HOH . G 6 HOH A 46 549 549 HOH HOH . G 6 HOH A 47 550 550 HOH HOH . G 6 HOH A 48 551 551 HOH HOH . G 6 HOH A 49 552 552 HOH HOH . G 6 HOH A 50 553 553 HOH HOH . G 6 HOH A 51 554 554 HOH HOH . G 6 HOH A 52 555 555 HOH HOH . G 6 HOH A 53 556 556 HOH HOH . G 6 HOH A 54 557 557 HOH HOH . G 6 HOH A 55 558 558 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N6 AQP . . . C 3 51.146 29.022 31.838 0.85 45.43 ? N6 AQP 400 A 1 HETATM 2 C C6 AQP . . . C 3 52.275 28.858 32.477 0.85 46.4 ? C6 AQP 400 A 1 HETATM 3 N N1 AQP . . . C 3 53.412 29.604 32.073 0.85 47.19 ? N1 AQP 400 A 1 HETATM 4 C C2 AQP . . . C 3 54.681 29.544 32.672 0.85 47.35 ? C2 AQP 400 A 1 HETATM 5 N N3 AQP . . . C 3 54.853 28.66 33.715 0.85 48.04 ? N3 AQP 400 A 1 HETATM 6 C C4 AQP . . . C 3 53.757 27.867 34.165 0.85 47.45 ? C4 AQP 400 A 1 HETATM 7 N N9 AQP . . . C 3 53.673 26.927 35.172 0.85 46.81 ? N9 AQP 400 A 1 HETATM 8 C C8 AQP . . . C 3 52.356 26.478 35.201 0.85 46.05 ? C8 AQP 400 A 1 HETATM 9 N N7 AQP . . . C 3 51.581 27.078 34.251 0.85 45.74 ? N7 AQP 400 A 1 HETATM 10 C C5 AQP . . . C 3 52.466 27.941 33.598 0.85 46.45 ? C5 AQP 400 A 1 HETATM 11 C C1' AQP . . . C 3 54.793 26.477 36.062 0.85 46.02 ? C1' AQP 400 A 1 HETATM 12 O O4' AQP . . . C 3 54.912 25.173 35.741 0.85 46.82 ? O4' AQP 400 A 1 HETATM 13 C C4' AQP . . . C 3 55.254 24.327 36.873 0.85 47.17 ? C4' AQP 400 A 1 HETATM 14 C C5' AQP . . . C 3 54.5 23.084 36.895 0.85 48.92 ? C5' AQP 400 A 1 HETATM 15 O O5' AQP . . . C 3 53.167 23.399 37.351 0.85 50.95 ? O5' AQP 400 A 1 HETATM 16 P PA AQP . . . C 3 52.198 22.336 37.889 0.85 52.49 ? PA AQP 400 A 1 HETATM 17 O O1A AQP . . . C 3 51.612 21.622 36.786 0.85 52.03 ? O1A AQP 400 A 1 HETATM 18 O O2A AQP . . . C 3 52.914 21.544 38.863 0.85 55.16 ? O2A AQP 400 A 1 HETATM 19 O O3A AQP . . . C 3 51.069 23.141 38.582 0.85 54.99 ? O3A AQP 400 A 1 HETATM 20 P PB AQP . . . C 3 50.059 24.158 37.924 0.85 57.45 ? PB AQP 400 A 1 HETATM 21 O O2B AQP . . . C 3 50.402 25.632 38.186 0.85 57.29 ? O2B AQP 400 A 1 HETATM 22 O O1B AQP . . . C 3 48.696 23.908 38.522 0.85 56.71 ? O1B AQP 400 A 1 HETATM 23 O O3B AQP . . . C 3 50.217 23.589 36.415 0.85 56.83 ? O3B AQP 400 A 1 HETATM 24 P PG AQP . . . C 3 49.3 23.501 35.185 0.85 55.47 ? PG AQP 400 A 1 HETATM 25 O O2G AQP . . . C 3 50.022 23.571 33.887 0.85 54.01 ? O2G AQP 400 A 1 HETATM 26 O O1G AQP . . . C 3 48.29 24.541 35.332 0.85 55.79 ? O1G AQP 400 A 1 HETATM 27 O O3G AQP . . . C 3 48.635 22.21 35.399 0.85 57.03 ? O3G AQP 400 A 1 HETATM 28 P PD AQP . . . C 3 47.226 21.818 36.104 0.85 58.76 ? PD AQP 400 A 1 HETATM 29 O O2D AQP . . . C 3 47.129 20.356 36.291 0.85 58.75 ? O2D AQP 400 A 1 HETATM 30 O O1D AQP . . . C 3 47.086 22.471 37.439 0.85 59.7 ? O1D AQP 400 A 1 HETATM 31 O O3D AQP . . . C 3 46.099 22.262 35.2 0.85 59.68 ? O3D AQP 400 A 1 HETATM 32 C C3' AQP . . . C 3 55.219 25.256 38.109 0.85 45.52 ? C3' AQP 400 A 1 HETATM 33 O O3' AQP . . . C 3 56.505 25.586 38.62 0.85 44.65 ? O3' AQP 400 A 1 HETATM 34 C C2' AQP . . . C 3 54.397 26.381 37.508 0.85 45.02 ? C2' AQP 400 A 1 HETATM 35 O O2' AQP . . . C 3 54.283 27.608 38.114 0.85 45.01 ? O2' AQP 400 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #