data_2OVF # _model_server_result.job_id r3Ciq8sGZEOTRokerMAjbw _model_server_result.datetime_utc '2024-11-17 09:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ovf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2OVF # _exptl.entry_id 2OVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OVF _cell.length_a 87.392 _cell.length_b 87.392 _cell.length_c 169.377 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 84.6885 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 38 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 20 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 214 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 196 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 2OVF _atom_sites.fract_transf_matrix[1][1] 0.011443 _atom_sites.fract_transf_matrix[1][2] 0.006606 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3P A 1 300 300 A3P A3P . C 3 HOH A 1 301 2 HOH HOH . C 3 HOH A 2 302 5 HOH HOH . C 3 HOH A 3 303 6 HOH HOH . C 3 HOH A 4 304 7 HOH HOH . C 3 HOH A 5 305 8 HOH HOH . C 3 HOH A 6 306 9 HOH HOH . C 3 HOH A 7 307 10 HOH HOH . C 3 HOH A 8 308 14 HOH HOH . C 3 HOH A 9 309 15 HOH HOH . C 3 HOH A 10 310 16 HOH HOH . C 3 HOH A 11 311 18 HOH HOH . C 3 HOH A 12 312 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . B 2 19.241 77.927 48.666 1 91.05 ? P1 A3P 300 A 1 HETATM 2 O O1P A3P . . . B 2 18.072 78.547 47.904 1 88.37 ? O1P A3P 300 A 1 HETATM 3 O O2P A3P . . . B 2 20.665 78.24 48.197 1 88.6 ? O2P A3P 300 A 1 HETATM 4 O O3P A3P . . . B 2 19.111 78.096 50.178 1 90.31 ? O3P A3P 300 A 1 HETATM 5 P P2 A3P . . . B 2 15.889 71.783 46.416 1 71.26 ? P2 A3P 300 A 1 HETATM 6 O O4P A3P . . . B 2 16.466 71.618 45.029 1 67.85 ? O4P A3P 300 A 1 HETATM 7 O O5P A3P . . . B 2 16.129 70.64 47.389 1 72.5 ? O5P A3P 300 A 1 HETATM 8 O O6P A3P . . . B 2 14.479 72.322 46.499 1 69.81 ? O6P A3P 300 A 1 HETATM 9 O O5' A3P . . . B 2 16.794 72.91 47.1 1 72.27 ? O5' A3P 300 A 1 HETATM 10 C C5' A3P . . . B 2 17.498 73.818 46.289 1 75.79 ? C5' A3P 300 A 1 HETATM 11 C C4' A3P . . . B 2 18.634 74.358 47.112 1 79.01 ? C4' A3P 300 A 1 HETATM 12 O O4' A3P . . . B 2 19.856 73.974 46.481 1 79.7 ? O4' A3P 300 A 1 HETATM 13 C C3' A3P . . . B 2 18.596 75.859 47.091 1 82.21 ? C3' A3P 300 A 1 HETATM 14 O O3' A3P . . . B 2 19.098 76.331 48.342 1 86.43 ? O3' A3P 300 A 1 HETATM 15 C C2' A3P . . . B 2 19.542 76.159 45.945 1 82.57 ? C2' A3P 300 A 1 HETATM 16 O O2' A3P . . . B 2 20.09 77.473 46.021 1 85.51 ? O2' A3P 300 A 1 HETATM 17 C C1' A3P . . . B 2 20.617 75.104 46.079 1 79.53 ? C1' A3P 300 A 1 HETATM 18 N N9 A3P . . . B 2 21.227 74.816 44.768 1 79.36 ? N9 A3P 300 A 1 HETATM 19 C C8 A3P . . . B 2 20.573 74.809 43.582 1 79.67 ? C8 A3P 300 A 1 HETATM 20 N N7 A3P . . . B 2 21.414 74.49 42.547 1 79.82 ? N7 A3P 300 A 1 HETATM 21 C C5 A3P . . . B 2 22.632 74.295 43.076 1 78.95 ? C5 A3P 300 A 1 HETATM 22 C C6 A3P . . . B 2 23.956 73.933 42.535 1 79.09 ? C6 A3P 300 A 1 HETATM 23 N N6 A3P . . . B 2 24.117 73.727 41.197 1 79.17 ? N6 A3P 300 A 1 HETATM 24 N N1 A3P . . . B 2 24.969 73.798 43.427 1 78.81 ? N1 A3P 300 A 1 HETATM 25 C C2 A3P . . . B 2 24.786 74.012 44.747 1 78.82 ? C2 A3P 300 A 1 HETATM 26 N N3 A3P . . . B 2 23.611 74.347 45.309 1 77.74 ? N3 A3P 300 A 1 HETATM 27 C C4 A3P . . . B 2 22.508 74.502 44.539 1 78.99 ? C4 A3P 300 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #