data_2OWM # _model_server_result.job_id wzZ6H8gXJcMzN8jeqbAofw _model_server_result.datetime_utc '2025-04-10 10:44:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2owm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 2OWM # _exptl.entry_id 2OWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.86 _cell.angle_gamma 90 _cell.entry_id 2OWM _cell.length_a 75.945 _cell.length_b 98.408 _cell.length_c 111.764 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J 1 1 B,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 151 A SER 151 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc2 B OG SER 151 B SER 151 1_555 G MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 G MG MG . B MG 1001 1_555 H O3B ADP . B ADP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 C OG SER 151 C SER 151 1_555 I MG MG . C MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc5 I MG MG . C MG 1001 1_555 J O3B ADP . C ADP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc6 D OG SER 151 D SER 151 1_555 K MG MG . D MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 K MG MG . D MG 1001 1_555 L O3B ADP . D ADP 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2OWM _atom_sites.fract_transf_matrix[1][1] 0.013167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 1001 1001 MG MG . F 3 ADP A 1 1002 1002 ADP ADP . G 2 MG B 1 1001 1001 MG MG . H 3 ADP B 1 1002 1002 ADP ADP . I 2 MG C 1 1001 1001 MG MG . J 3 ADP C 1 1002 1002 ADP ADP . K 2 MG D 1 1001 1001 MG MG . L 3 ADP D 1 1002 1002 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 3 36.787 28.94 45.45 1 74.36 ? PB ADP 1002 A 1 HETATM 2 O O1B ADP . . . F 3 37.701 29.415 44.321 1 72.01 ? O1B ADP 1002 A 1 HETATM 3 O O2B ADP . . . F 3 37.327 28.829 46.872 1 72.04 ? O2B ADP 1002 A 1 HETATM 4 O O3B ADP . . . F 3 35.38 29.513 45.343 1 75.26 ? O3B ADP 1002 A 1 HETATM 5 P PA ADP . . . F 3 35.415 26.969 44.047 1 76.67 ? PA ADP 1002 A 1 HETATM 6 O O1A ADP . . . F 3 34.067 26.945 44.753 1 77.39 ? O1A ADP 1002 A 1 HETATM 7 O O2A ADP . . . F 3 35.59 27.868 42.856 1 76.6 ? O2A ADP 1002 A 1 HETATM 8 O O3A ADP . . . F 3 36.55 27.392 45.088 1 75.78 ? O3A ADP 1002 A 1 HETATM 9 O O5' ADP . . . F 3 35.788 25.432 43.803 1 74.09 ? O5' ADP 1002 A 1 HETATM 10 C C5' ADP . . . F 3 36.963 25.028 43.173 1 74.27 ? C5' ADP 1002 A 1 HETATM 11 C C4' ADP . . . F 3 36.637 23.768 42.355 1 75.73 ? C4' ADP 1002 A 1 HETATM 12 O O4' ADP . . . F 3 36.386 22.597 43.147 1 75.6 ? O4' ADP 1002 A 1 HETATM 13 C C3' ADP . . . F 3 35.407 23.899 41.459 1 76.3 ? C3' ADP 1002 A 1 HETATM 14 O O3' ADP . . . F 3 35.604 23.135 40.241 1 74.75 ? O3' ADP 1002 A 1 HETATM 15 C C2' ADP . . . F 3 34.332 23.229 42.261 1 75.85 ? C2' ADP 1002 A 1 HETATM 16 O O2' ADP . . . F 3 33.3 22.746 41.432 1 76.65 ? O2' ADP 1002 A 1 HETATM 17 C C1' ADP . . . F 3 35.089 22.078 42.858 1 75.93 ? C1' ADP 1002 A 1 HETATM 18 N N9 ADP . . . F 3 34.473 21.817 44.14 1 75.66 ? N9 ADP 1002 A 1 HETATM 19 C C8 ADP . . . F 3 34.243 22.782 45.028 1 77.1 ? C8 ADP 1002 A 1 HETATM 20 N N7 ADP . . . F 3 33.668 22.315 46.159 1 77.23 ? N7 ADP 1002 A 1 HETATM 21 C C5 ADP . . . F 3 33.558 21.021 45.977 1 75.72 ? C5 ADP 1002 A 1 HETATM 22 C C6 ADP . . . F 3 33.043 19.975 46.816 1 75.83 ? C6 ADP 1002 A 1 HETATM 23 N N6 ADP . . . F 3 32.578 20.402 47.987 1 76.36 ? N6 ADP 1002 A 1 HETATM 24 N N1 ADP . . . F 3 33.04 18.707 46.37 1 76.47 ? N1 ADP 1002 A 1 HETATM 25 C C2 ADP . . . F 3 33.525 18.445 45.134 1 76.95 ? C2 ADP 1002 A 1 HETATM 26 N N3 ADP . . . F 3 34.04 19.383 44.302 1 76.62 ? N3 ADP 1002 A 1 HETATM 27 C C4 ADP . . . F 3 34.078 20.678 44.663 1 75.54 ? C4 ADP 1002 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #