data_2OX3 # _model_server_result.job_id CJbSXtUwVb5XKmfK86fJEg _model_server_result.datetime_utc '2024-10-20 18:59:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ox3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":603}' # _entry.id 2OX3 # _exptl.entry_id 2OX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OX3 _cell.length_a 44.687 _cell.length_b 83.112 _cell.length_c 174.422 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C LEU 108 A LEU 108 1_555 A N MSE 109 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C MSE 109 A MSE 109 1_555 A N ASP 110 A ASP 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C THR 165 A THR 165 1_555 A N MSE 166 A MSE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 166 A MSE 166 1_555 A N LEU 167 A LEU 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C ARG 193 A ARG 193 1_555 A N MSE 194 A MSE 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C MSE 194 A MSE 194 1_555 A N ARG 195 A ARG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C PRO 278 A PRO 278 1_555 A N MSE 279 A MSE 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C MSE 279 A MSE 279 1_555 A N ALA 280 A ALA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C HIS 317 A HIS 317 1_555 A N MSE 318 A MSE 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 A C MSE 318 A MSE 318 1_555 A N VAL 319 A VAL 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2OX3 _atom_sites.fract_transf_matrix[1][1] 0.022378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 603 603 F6P F6P . C 3 PEP A 1 604 604 PEP PEP . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 503 503 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 510 510 HOH HOH . D 4 HOH A 10 511 511 HOH HOH . D 4 HOH A 11 515 515 HOH HOH . D 4 HOH A 12 516 516 HOH HOH . D 4 HOH A 13 517 517 HOH HOH . D 4 HOH A 14 518 518 HOH HOH . D 4 HOH A 15 520 520 HOH HOH . D 4 HOH A 16 521 521 HOH HOH . D 4 HOH A 17 522 522 HOH HOH . D 4 HOH A 18 523 523 HOH HOH . D 4 HOH A 19 524 524 HOH HOH . D 4 HOH A 20 525 525 HOH HOH . D 4 HOH A 21 527 527 HOH HOH . D 4 HOH A 22 528 528 HOH HOH . D 4 HOH A 23 529 529 HOH HOH . D 4 HOH A 24 530 530 HOH HOH . D 4 HOH A 25 531 531 HOH HOH . D 4 HOH A 26 532 532 HOH HOH . D 4 HOH A 27 533 533 HOH HOH . D 4 HOH A 28 534 534 HOH HOH . D 4 HOH A 29 535 535 HOH HOH . D 4 HOH A 30 536 536 HOH HOH . D 4 HOH A 31 537 537 HOH HOH . D 4 HOH A 32 538 538 HOH HOH . D 4 HOH A 33 539 539 HOH HOH . D 4 HOH A 34 540 540 HOH HOH . D 4 HOH A 35 541 541 HOH HOH . D 4 HOH A 36 542 542 HOH HOH . D 4 HOH A 37 543 543 HOH HOH . D 4 HOH A 38 544 544 HOH HOH . D 4 HOH A 39 545 545 HOH HOH . D 4 HOH A 40 546 546 HOH HOH . D 4 HOH A 41 547 547 HOH HOH . D 4 HOH A 42 548 548 HOH HOH . D 4 HOH A 43 549 549 HOH HOH . D 4 HOH A 44 550 550 HOH HOH . D 4 HOH A 45 551 551 HOH HOH . D 4 HOH A 46 552 552 HOH HOH . D 4 HOH A 47 553 553 HOH HOH . D 4 HOH A 48 554 554 HOH HOH . D 4 HOH A 49 555 555 HOH HOH . D 4 HOH A 50 556 556 HOH HOH . D 4 HOH A 51 557 557 HOH HOH . D 4 HOH A 52 558 558 HOH HOH . D 4 HOH A 53 559 559 HOH HOH . D 4 HOH A 54 560 560 HOH HOH . D 4 HOH A 55 561 561 HOH HOH . D 4 HOH A 56 562 562 HOH HOH . D 4 HOH A 57 563 563 HOH HOH . D 4 HOH A 58 564 564 HOH HOH . D 4 HOH A 59 565 565 HOH HOH . D 4 HOH A 60 566 566 HOH HOH . D 4 HOH A 61 567 567 HOH HOH . D 4 HOH A 62 568 568 HOH HOH . D 4 HOH A 63 569 569 HOH HOH . D 4 HOH A 64 570 570 HOH HOH . D 4 HOH A 65 571 571 HOH HOH . D 4 HOH A 66 572 572 HOH HOH . D 4 HOH A 67 573 573 HOH HOH . D 4 HOH A 68 575 575 HOH HOH . D 4 HOH A 69 576 576 HOH HOH . D 4 HOH A 70 577 577 HOH HOH . D 4 HOH A 71 578 578 HOH HOH . D 4 HOH A 72 579 579 HOH HOH . D 4 HOH A 73 580 580 HOH HOH . D 4 HOH A 74 581 581 HOH HOH . D 4 HOH A 75 583 583 HOH HOH . D 4 HOH A 76 584 584 HOH HOH . D 4 HOH A 77 585 585 HOH HOH . D 4 HOH A 78 586 586 HOH HOH . D 4 HOH A 79 587 587 HOH HOH . D 4 HOH A 80 588 588 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . B 2 9.056 11.133 27.273 1 36.46 ? O1 F6P 603 A 1 HETATM 2 C C1 F6P . . . B 2 9.469 9.865 26.79 1 33.38 ? C1 F6P 603 A 1 HETATM 3 C C2 F6P . . . B 2 8.517 8.758 27.226 1 31.77 ? C2 F6P 603 A 1 HETATM 4 O O2 F6P . . . B 2 8.764 7.594 26.46 1 31.69 ? O2 F6P 603 A 1 HETATM 5 C C3 F6P . . . B 2 7.031 9.089 27.16 1 29.75 ? C3 F6P 603 A 1 HETATM 6 O O3 F6P . . . B 2 6.574 8.894 25.844 1 28.51 ? O3 F6P 603 A 1 HETATM 7 C C4 F6P . . . B 2 6.454 8.079 28.141 1 31.75 ? C4 F6P 603 A 1 HETATM 8 O O4 F6P . . . B 2 5.208 8.521 28.665 1 31.99 ? O4 F6P 603 A 1 HETATM 9 C C5 F6P . . . B 2 7.526 8.03 29.226 1 32.16 ? C5 F6P 603 A 1 HETATM 10 O O5 F6P . . . B 2 8.762 8.463 28.589 1 31.7 ? O5 F6P 603 A 1 HETATM 11 C C6 F6P . . . B 2 7.724 6.648 29.786 1 31.77 ? C6 F6P 603 A 1 HETATM 12 O O6 F6P . . . B 2 8.659 6.737 30.87 1 33.4 ? O6 F6P 603 A 1 HETATM 13 P P F6P . . . B 2 8.912 5.448 31.833 1 34.45 ? P F6P 603 A 1 HETATM 14 O O1P F6P . . . B 2 9.69 4.431 31.009 1 36.38 ? O1P F6P 603 A 1 HETATM 15 O O2P F6P . . . B 2 9.722 5.968 33.013 1 37.98 ? O2P F6P 603 A 1 HETATM 16 O O3P F6P . . . B 2 7.529 4.945 32.23 1 35.92 ? O3P F6P 603 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 16 #