data_2OXF
#
_model_server_result.job_id            3GVwymR6fZraayO_6BYrvw 
_model_server_result.datetime_utc      '2024-11-19 14:30:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2oxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":5001}' 
#
_entry.id    2OXF 
#
_exptl.entry_id    2OXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2OXF 
_cell.length_a            150.86 
_cell.length_b            150.86 
_cell.length_c            47.84 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 150.86 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 75.43 130.648592 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2OXF 
_atom_sites.fract_transf_matrix[1][1]    0.006629 
_atom_sites.fract_transf_matrix[1][2]    0.003827 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 5001 5001 GOL GOL . 
D 3 HOH A 1 5002 3002 HOH HOH . 
D 3 HOH A 2 5003 3005 HOH HOH . 
D 3 HOH A 3 5004 3006 HOH HOH . 
D 3 HOH A 4 5005 3008 HOH HOH . 
D 3 HOH A 5 5006 3010 HOH HOH . 
D 3 HOH A 6 5007 3012 HOH HOH . 
D 3 HOH A 7 5008 3014 HOH HOH . 
D 3 HOH A 8 5009 3015 HOH HOH . 
D 3 HOH A 9 5010 3016 HOH HOH . 
D 3 HOH A 10 5011 3017 HOH HOH . 
D 3 HOH A 11 5012 3018 HOH HOH . 
D 3 HOH A 12 5013 3019 HOH HOH . 
D 3 HOH A 13 5014 3020 HOH HOH . 
D 3 HOH A 14 5015 3021 HOH HOH . 
D 3 HOH A 15 5016 3023 HOH HOH . 
D 3 HOH A 16 5017 3026 HOH HOH . 
D 3 HOH A 17 5018 3028 HOH HOH . 
D 3 HOH A 18 5019 3029 HOH HOH . 
D 3 HOH A 19 5020 3034 HOH HOH . 
D 3 HOH A 20 5021 3037 HOH HOH . 
D 3 HOH A 21 5022 3038 HOH HOH . 
D 3 HOH A 22 5023 3042 HOH HOH . 
D 3 HOH A 23 5024 3044 HOH HOH . 
D 3 HOH A 24 5025 3047 HOH HOH . 
D 3 HOH A 25 5026 3048 HOH HOH . 
D 3 HOH A 26 5027 3049 HOH HOH . 
D 3 HOH A 27 5028 3051 HOH HOH . 
D 3 HOH A 28 5029 3053 HOH HOH . 
D 3 HOH A 29 5030 3057 HOH HOH . 
D 3 HOH A 30 5031 3060 HOH HOH . 
D 3 HOH A 31 5032 3061 HOH HOH . 
D 3 HOH A 32 5033 3064 HOH HOH . 
D 3 HOH A 33 5034 3065 HOH HOH . 
D 3 HOH A 34 5035 3066 HOH HOH . 
D 3 HOH A 35 5036 3067 HOH HOH . 
D 3 HOH A 36 5037 3068 HOH HOH . 
D 3 HOH A 37 5038 3069 HOH HOH . 
D 3 HOH A 38 5039 3071 HOH HOH . 
D 3 HOH A 39 5040 3073 HOH HOH . 
D 3 HOH A 40 5041 3076 HOH HOH . 
D 3 HOH A 41 5042 3077 HOH HOH . 
D 3 HOH A 42 5043 3080 HOH HOH . 
D 3 HOH A 43 5044 3082 HOH HOH . 
D 3 HOH A 44 5045 3083 HOH HOH . 
D 3 HOH A 45 5046 3084 HOH HOH . 
D 3 HOH A 46 5047 3086 HOH HOH . 
D 3 HOH A 47 5048 3089 HOH HOH . 
D 3 HOH A 48 5049 3092 HOH HOH . 
D 3 HOH A 49 5050 3093 HOH HOH . 
D 3 HOH A 50 5051 3095 HOH HOH . 
D 3 HOH A 51 5052 3096 HOH HOH . 
D 3 HOH A 52 5053 3097 HOH HOH . 
D 3 HOH A 53 5054 3098 HOH HOH . 
D 3 HOH A 54 5055 3099 HOH HOH . 
D 3 HOH A 55 5056 3100 HOH HOH . 
D 3 HOH A 56 5057 3104 HOH HOH . 
D 3 HOH A 57 5058 3106 HOH HOH . 
D 3 HOH A 58 5059 3107 HOH HOH . 
D 3 HOH A 59 5060 3108 HOH HOH . 
D 3 HOH A 60 5061 3109 HOH HOH . 
D 3 HOH A 61 5062 3111 HOH HOH . 
D 3 HOH A 62 5063 3114 HOH HOH . 
D 3 HOH A 63 5064 3115 HOH HOH . 
D 3 HOH A 64 5065 3117 HOH HOH . 
D 3 HOH A 65 5066 3119 HOH HOH . 
D 3 HOH A 66 5067 3120 HOH HOH . 
D 3 HOH A 67 5068 3122 HOH HOH . 
D 3 HOH A 68 5069 3123 HOH HOH . 
D 3 HOH A 69 5070 3128 HOH HOH . 
D 3 HOH A 70 5071 3132 HOH HOH . 
D 3 HOH A 71 5072 3134 HOH HOH . 
D 3 HOH A 72 5073 3135 HOH HOH . 
D 3 HOH A 73 5074 3136 HOH HOH . 
D 3 HOH A 74 5075 3140 HOH HOH . 
D 3 HOH A 75 5076 3141 HOH HOH . 
D 3 HOH A 76 5077 3148 HOH HOH . 
D 3 HOH A 77 5078 3149 HOH HOH . 
D 3 HOH A 78 5079 3150 HOH HOH . 
D 3 HOH A 79 5080 3154 HOH HOH . 
D 3 HOH A 80 5081 3155 HOH HOH . 
D 3 HOH A 81 5082 3157 HOH HOH . 
D 3 HOH A 82 5083 3158 HOH HOH . 
D 3 HOH A 83 5084 3160 HOH HOH . 
D 3 HOH A 84 5085 3161 HOH HOH . 
D 3 HOH A 85 5086 3165 HOH HOH . 
D 3 HOH A 86 5087 3166 HOH HOH . 
D 3 HOH A 87 5088 3167 HOH HOH . 
D 3 HOH A 88 5089 3170 HOH HOH . 
D 3 HOH A 89 5090 3171 HOH HOH . 
D 3 HOH A 90 5091 3172 HOH HOH . 
D 3 HOH A 91 5092 3176 HOH HOH . 
D 3 HOH A 92 5093 3178 HOH HOH . 
D 3 HOH A 93 5094 3181 HOH HOH . 
D 3 HOH A 94 5095 3186 HOH HOH . 
D 3 HOH A 95 5096 3187 HOH HOH . 
D 3 HOH A 96 5097 3188 HOH HOH . 
D 3 HOH A 97 5098 3189 HOH HOH . 
D 3 HOH A 98 5099 3190 HOH HOH . 
D 3 HOH A 99 5100 3191 HOH HOH . 
D 3 HOH A 100 5101 3193 HOH HOH . 
D 3 HOH A 101 5102 3197 HOH HOH . 
D 3 HOH A 102 5103 3198 HOH HOH . 
D 3 HOH A 103 5104 3201 HOH HOH . 
D 3 HOH A 104 5105 3202 HOH HOH . 
D 3 HOH A 105 5106 3204 HOH HOH . 
D 3 HOH A 106 5107 3205 HOH HOH . 
D 3 HOH A 107 5108 3207 HOH HOH . 
D 3 HOH A 108 5109 3208 HOH HOH . 
D 3 HOH A 109 5110 3211 HOH HOH . 
D 3 HOH A 110 5111 3212 HOH HOH . 
D 3 HOH A 111 5112 3213 HOH HOH . 
D 3 HOH A 112 5113 3215 HOH HOH . 
D 3 HOH A 113 5114 3216 HOH HOH . 
D 3 HOH A 114 5115 3218 HOH HOH . 
D 3 HOH A 115 5116 3219 HOH HOH . 
D 3 HOH A 116 5117 3220 HOH HOH . 
D 3 HOH A 117 5118 3224 HOH HOH . 
D 3 HOH A 118 5119 3226 HOH HOH . 
D 3 HOH A 119 5120 3227 HOH HOH . 
D 3 HOH A 120 5121 3229 HOH HOH . 
D 3 HOH A 121 5122 3230 HOH HOH . 
D 3 HOH A 122 5123 3235 HOH HOH . 
D 3 HOH A 123 5124 3236 HOH HOH . 
D 3 HOH A 124 5125 3240 HOH HOH . 
D 3 HOH A 125 5126 3244 HOH HOH . 
D 3 HOH A 126 5127 3247 HOH HOH . 
D 3 HOH A 127 5128 3251 HOH HOH . 
D 3 HOH A 128 5129 3252 HOH HOH . 
D 3 HOH A 129 5130 3253 HOH HOH . 
D 3 HOH A 130 5131 3256 HOH HOH . 
D 3 HOH A 131 5132 3262 HOH HOH . 
D 3 HOH A 132 5133 3263 HOH HOH . 
D 3 HOH A 133 5134 3265 HOH HOH . 
D 3 HOH A 134 5135 3266 HOH HOH . 
D 3 HOH A 135 5136 3268 HOH HOH . 
D 3 HOH A 136 5137 3269 HOH HOH . 
D 3 HOH A 137 5138 3271 HOH HOH . 
D 3 HOH A 138 5139 3272 HOH HOH . 
D 3 HOH A 139 5140 3274 HOH HOH . 
D 3 HOH A 140 5141 3278 HOH HOH . 
E 3 HOH F 1 2254 3001 HOH HOH . 
E 3 HOH F 2 2255 3003 HOH HOH . 
E 3 HOH F 3 2256 3004 HOH HOH . 
E 3 HOH F 4 2257 3007 HOH HOH . 
E 3 HOH F 5 2258 3009 HOH HOH . 
E 3 HOH F 6 2259 3011 HOH HOH . 
E 3 HOH F 7 2260 3013 HOH HOH . 
E 3 HOH F 8 2261 3022 HOH HOH . 
E 3 HOH F 9 2262 3024 HOH HOH . 
E 3 HOH F 10 2263 3025 HOH HOH . 
E 3 HOH F 11 2264 3027 HOH HOH . 
E 3 HOH F 12 2265 3030 HOH HOH . 
E 3 HOH F 13 2266 3031 HOH HOH . 
E 3 HOH F 14 2267 3032 HOH HOH . 
E 3 HOH F 15 2268 3033 HOH HOH . 
E 3 HOH F 16 2269 3035 HOH HOH . 
E 3 HOH F 17 2270 3036 HOH HOH . 
E 3 HOH F 18 2271 3039 HOH HOH . 
E 3 HOH F 19 2272 3040 HOH HOH . 
E 3 HOH F 20 2273 3041 HOH HOH . 
E 3 HOH F 21 2274 3043 HOH HOH . 
E 3 HOH F 22 2275 3045 HOH HOH . 
E 3 HOH F 23 2276 3046 HOH HOH . 
E 3 HOH F 24 2277 3050 HOH HOH . 
E 3 HOH F 25 2278 3052 HOH HOH . 
E 3 HOH F 26 2279 3054 HOH HOH . 
E 3 HOH F 27 2280 3055 HOH HOH . 
E 3 HOH F 28 2281 3056 HOH HOH . 
E 3 HOH F 29 2282 3058 HOH HOH . 
E 3 HOH F 30 2283 3059 HOH HOH . 
E 3 HOH F 31 2284 3062 HOH HOH . 
E 3 HOH F 32 2285 3063 HOH HOH . 
E 3 HOH F 33 2286 3070 HOH HOH . 
E 3 HOH F 34 2287 3072 HOH HOH . 
E 3 HOH F 35 2288 3074 HOH HOH . 
E 3 HOH F 36 2289 3075 HOH HOH . 
E 3 HOH F 37 2290 3078 HOH HOH . 
E 3 HOH F 38 2291 3079 HOH HOH . 
E 3 HOH F 39 2292 3081 HOH HOH . 
E 3 HOH F 40 2293 3085 HOH HOH . 
E 3 HOH F 41 2294 3087 HOH HOH . 
E 3 HOH F 42 2295 3088 HOH HOH . 
E 3 HOH F 43 2296 3090 HOH HOH . 
E 3 HOH F 44 2297 3091 HOH HOH . 
E 3 HOH F 45 2298 3094 HOH HOH . 
E 3 HOH F 46 2299 3101 HOH HOH . 
E 3 HOH F 47 2300 3102 HOH HOH . 
E 3 HOH F 48 2301 3103 HOH HOH . 
E 3 HOH F 49 2302 3105 HOH HOH . 
E 3 HOH F 50 2303 3110 HOH HOH . 
E 3 HOH F 51 2304 3112 HOH HOH . 
E 3 HOH F 52 2305 3113 HOH HOH . 
E 3 HOH F 53 2306 3116 HOH HOH . 
E 3 HOH F 54 2307 3118 HOH HOH . 
E 3 HOH F 55 2308 3121 HOH HOH . 
E 3 HOH F 56 2309 3124 HOH HOH . 
E 3 HOH F 57 2310 3125 HOH HOH . 
E 3 HOH F 58 2311 3126 HOH HOH . 
E 3 HOH F 59 2312 3127 HOH HOH . 
E 3 HOH F 60 2313 3129 HOH HOH . 
E 3 HOH F 61 2314 3130 HOH HOH . 
E 3 HOH F 62 2315 3131 HOH HOH . 
E 3 HOH F 63 2316 3133 HOH HOH . 
E 3 HOH F 64 2317 3137 HOH HOH . 
E 3 HOH F 65 2318 3138 HOH HOH . 
E 3 HOH F 66 2319 3142 HOH HOH . 
E 3 HOH F 67 2320 3143 HOH HOH . 
E 3 HOH F 68 2321 3144 HOH HOH . 
E 3 HOH F 69 2322 3145 HOH HOH . 
E 3 HOH F 70 2323 3146 HOH HOH . 
E 3 HOH F 71 2324 3147 HOH HOH . 
E 3 HOH F 72 2325 3151 HOH HOH . 
E 3 HOH F 73 2326 3152 HOH HOH . 
E 3 HOH F 74 2327 3153 HOH HOH . 
E 3 HOH F 75 2328 3159 HOH HOH . 
E 3 HOH F 76 2329 3162 HOH HOH . 
E 3 HOH F 77 2330 3163 HOH HOH . 
E 3 HOH F 78 2331 3164 HOH HOH . 
E 3 HOH F 79 2332 3168 HOH HOH . 
E 3 HOH F 80 2333 3169 HOH HOH . 
E 3 HOH F 81 2334 3173 HOH HOH . 
E 3 HOH F 82 2335 3174 HOH HOH . 
E 3 HOH F 83 2336 3177 HOH HOH . 
E 3 HOH F 84 2337 3179 HOH HOH . 
E 3 HOH F 85 2338 3180 HOH HOH . 
E 3 HOH F 86 2339 3184 HOH HOH . 
E 3 HOH F 87 2340 3185 HOH HOH . 
E 3 HOH F 88 2341 3192 HOH HOH . 
E 3 HOH F 89 2342 3195 HOH HOH . 
E 3 HOH F 90 2343 3196 HOH HOH . 
E 3 HOH F 91 2344 3199 HOH HOH . 
E 3 HOH F 92 2345 3200 HOH HOH . 
E 3 HOH F 93 2346 3203 HOH HOH . 
E 3 HOH F 94 2347 3206 HOH HOH . 
E 3 HOH F 95 2348 3210 HOH HOH . 
E 3 HOH F 96 2349 3214 HOH HOH . 
E 3 HOH F 97 2350 3221 HOH HOH . 
E 3 HOH F 98 2351 3223 HOH HOH . 
E 3 HOH F 99 2352 3225 HOH HOH . 
E 3 HOH F 100 2353 3228 HOH HOH . 
E 3 HOH F 101 2354 3233 HOH HOH . 
E 3 HOH F 102 2355 3234 HOH HOH . 
E 3 HOH F 103 2356 3239 HOH HOH . 
E 3 HOH F 104 2357 3241 HOH HOH . 
E 3 HOH F 105 2358 3242 HOH HOH . 
E 3 HOH F 106 2359 3243 HOH HOH . 
E 3 HOH F 107 2360 3246 HOH HOH . 
E 3 HOH F 108 2361 3248 HOH HOH . 
E 3 HOH F 109 2362 3254 HOH HOH . 
E 3 HOH F 110 2363 3255 HOH HOH . 
E 3 HOH F 111 2364 3257 HOH HOH . 
E 3 HOH F 112 2365 3259 HOH HOH . 
E 3 HOH F 113 2366 3260 HOH HOH . 
E 3 HOH F 114 2367 3261 HOH HOH . 
E 3 HOH F 115 2368 3264 HOH HOH . 
E 3 HOH F 116 2369 3267 HOH HOH . 
E 3 HOH F 117 2370 3275 HOH HOH . 
E 3 HOH F 118 2371 3277 HOH HOH . 
E 3 HOH F 119 2372 9991 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 55.975 35.992 16.24 1 32.35 ? C1 GOL 5001 A 1 
HETATM 2 O O1 GOL . . . C 2 56.046 35.314 15.004 1 36.41 ? O1 GOL 5001 A 1 
HETATM 3 C C2 GOL . . . C 2 54.808 36.968 16.208 1 31.04 ? C2 GOL 5001 A 1 
HETATM 4 O O2 GOL . . . C 2 55.047 37.935 15.213 1 42.7 ? O2 GOL 5001 A 1 
HETATM 5 C C3 GOL . . . C 2 54.653 37.66 17.558 1 33.96 ? C3 GOL 5001 A 1 
HETATM 6 O O3 GOL . . . C 2 53.885 36.852 18.42 1 56.42 ? O3 GOL 5001 A 1 
#
_model_server_stats.io_time_ms              122 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#