data_2OYC # _model_server_result.job_id vJSQKidFkKggft790JaL3g _model_server_result.datetime_utc '2024-11-30 21:00:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":305}' # _entry.id 2OYC # _exptl.entry_id 2OYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2OYC _cell.length_a 54.329 _cell.length_b 54.329 _cell.length_c 213.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 213.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 219 A TYR 217 1_555 A N MSE 220 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 220 A MSE 218 1_555 A N PHE 221 A PHE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C LEU 236 A LEU 234 1_555 A N MSE 237 A MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 237 A MSE 235 1_555 A N VAL 238 A VAL 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C GLY 253 A GLY 251 1_555 A N MSE 254 A MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 254 A MSE 252 1_555 A N THR 255 A THR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OD2 ASP 27 A ASP 25 1_555 B NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 A O ASP 29 A ASP 27 1_555 B NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc3 A OD1 ASP 240 A ASP 238 1_555 B NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 B NA NA . A NA 305 1_555 D O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 B NA NA . A NA 305 1_555 D O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2OYC _atom_sites.fract_transf_matrix[1][1] 0.018406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 305 301 NA NA . C 3 WO4 A 1 401 401 WO4 WO4 . D 4 HOH A 1 402 1 HOH HOH . D 4 HOH A 2 403 2 HOH HOH . D 4 HOH A 3 404 3 HOH HOH . D 4 HOH A 4 405 4 HOH HOH . D 4 HOH A 5 406 5 HOH HOH . D 4 HOH A 6 407 6 HOH HOH . D 4 HOH A 7 408 7 HOH HOH . D 4 HOH A 8 409 8 HOH HOH . D 4 HOH A 9 410 9 HOH HOH . D 4 HOH A 10 411 10 HOH HOH . D 4 HOH A 11 412 11 HOH HOH . D 4 HOH A 12 413 12 HOH HOH . D 4 HOH A 13 414 13 HOH HOH . D 4 HOH A 14 415 14 HOH HOH . D 4 HOH A 15 416 15 HOH HOH . D 4 HOH A 16 417 16 HOH HOH . D 4 HOH A 17 418 17 HOH HOH . D 4 HOH A 18 419 18 HOH HOH . D 4 HOH A 19 420 19 HOH HOH . D 4 HOH A 20 421 20 HOH HOH . D 4 HOH A 21 422 21 HOH HOH . D 4 HOH A 22 423 22 HOH HOH . D 4 HOH A 23 424 23 HOH HOH . D 4 HOH A 24 425 24 HOH HOH . D 4 HOH A 25 426 25 HOH HOH . D 4 HOH A 26 427 27 HOH HOH . D 4 HOH A 27 428 29 HOH HOH . D 4 HOH A 28 429 30 HOH HOH . D 4 HOH A 29 430 31 HOH HOH . D 4 HOH A 30 431 32 HOH HOH . D 4 HOH A 31 432 33 HOH HOH . D 4 HOH A 32 433 34 HOH HOH . D 4 HOH A 33 434 35 HOH HOH . D 4 HOH A 34 435 36 HOH HOH . D 4 HOH A 35 436 37 HOH HOH . D 4 HOH A 36 437 38 HOH HOH . D 4 HOH A 37 438 39 HOH HOH . D 4 HOH A 38 439 40 HOH HOH . D 4 HOH A 39 440 41 HOH HOH . D 4 HOH A 40 441 42 HOH HOH . D 4 HOH A 41 442 43 HOH HOH . D 4 HOH A 42 443 44 HOH HOH . D 4 HOH A 43 444 45 HOH HOH . D 4 HOH A 44 445 48 HOH HOH . D 4 HOH A 45 446 49 HOH HOH . D 4 HOH A 46 447 50 HOH HOH . D 4 HOH A 47 448 51 HOH HOH . D 4 HOH A 48 449 52 HOH HOH . D 4 HOH A 49 450 53 HOH HOH . D 4 HOH A 50 451 54 HOH HOH . D 4 HOH A 51 452 56 HOH HOH . D 4 HOH A 52 453 57 HOH HOH . D 4 HOH A 53 454 58 HOH HOH . D 4 HOH A 54 455 60 HOH HOH . D 4 HOH A 55 456 62 HOH HOH . D 4 HOH A 56 457 64 HOH HOH . D 4 HOH A 57 458 65 HOH HOH . D 4 HOH A 58 459 66 HOH HOH . D 4 HOH A 59 460 67 HOH HOH . D 4 HOH A 60 461 68 HOH HOH . D 4 HOH A 61 462 69 HOH HOH . D 4 HOH A 62 463 70 HOH HOH . D 4 HOH A 63 464 71 HOH HOH . D 4 HOH A 64 465 72 HOH HOH . D 4 HOH A 65 466 73 HOH HOH . D 4 HOH A 66 467 74 HOH HOH . D 4 HOH A 67 468 75 HOH HOH . D 4 HOH A 68 469 76 HOH HOH . D 4 HOH A 69 470 77 HOH HOH . D 4 HOH A 70 471 78 HOH HOH . D 4 HOH A 71 472 79 HOH HOH . D 4 HOH A 72 473 80 HOH HOH . D 4 HOH A 73 474 81 HOH HOH . D 4 HOH A 74 475 82 HOH HOH . D 4 HOH A 75 476 83 HOH HOH . D 4 HOH A 76 477 84 HOH HOH . D 4 HOH A 77 478 85 HOH HOH . D 4 HOH A 78 479 86 HOH HOH . D 4 HOH A 79 480 88 HOH HOH . D 4 HOH A 80 481 92 HOH HOH . D 4 HOH A 81 482 93 HOH HOH . D 4 HOH A 82 483 94 HOH HOH . D 4 HOH A 83 484 95 HOH HOH . D 4 HOH A 84 485 96 HOH HOH . D 4 HOH A 85 486 97 HOH HOH . D 4 HOH A 86 487 98 HOH HOH . D 4 HOH A 87 488 100 HOH HOH . D 4 HOH A 88 489 101 HOH HOH . D 4 HOH A 89 490 102 HOH HOH . D 4 HOH A 90 491 103 HOH HOH . D 4 HOH A 91 492 104 HOH HOH . D 4 HOH A 92 493 107 HOH HOH . D 4 HOH A 93 494 108 HOH HOH . D 4 HOH A 94 495 109 HOH HOH . D 4 HOH A 95 496 111 HOH HOH . D 4 HOH A 96 497 112 HOH HOH . D 4 HOH A 97 498 113 HOH HOH . D 4 HOH A 98 499 114 HOH HOH . D 4 HOH A 99 500 115 HOH HOH . D 4 HOH A 100 501 116 HOH HOH . D 4 HOH A 101 502 119 HOH HOH . D 4 HOH A 102 503 120 HOH HOH . D 4 HOH A 103 504 122 HOH HOH . D 4 HOH A 104 505 123 HOH HOH . D 4 HOH A 105 506 124 HOH HOH . D 4 HOH A 106 507 125 HOH HOH . D 4 HOH A 107 508 126 HOH HOH . D 4 HOH A 108 509 127 HOH HOH . D 4 HOH A 109 510 128 HOH HOH . D 4 HOH A 110 511 129 HOH HOH . D 4 HOH A 111 512 130 HOH HOH . D 4 HOH A 112 513 131 HOH HOH . D 4 HOH A 113 514 132 HOH HOH . D 4 HOH A 114 515 134 HOH HOH . D 4 HOH A 115 516 135 HOH HOH . D 4 HOH A 116 517 137 HOH HOH . D 4 HOH A 117 518 138 HOH HOH . D 4 HOH A 118 519 140 HOH HOH . D 4 HOH A 119 520 143 HOH HOH . D 4 HOH A 120 521 144 HOH HOH . D 4 HOH A 121 522 145 HOH HOH . D 4 HOH A 122 523 146 HOH HOH . D 4 HOH A 123 524 147 HOH HOH . D 4 HOH A 124 525 148 HOH HOH . D 4 HOH A 125 526 149 HOH HOH . D 4 HOH A 126 527 150 HOH HOH . D 4 HOH A 127 528 151 HOH HOH . D 4 HOH A 128 529 152 HOH HOH . D 4 HOH A 129 530 153 HOH HOH . D 4 HOH A 130 531 156 HOH HOH . D 4 HOH A 131 532 159 HOH HOH . D 4 HOH A 132 533 160 HOH HOH . D 4 HOH A 133 534 161 HOH HOH . D 4 HOH A 134 535 162 HOH HOH . D 4 HOH A 135 536 163 HOH HOH . D 4 HOH A 136 537 165 HOH HOH . D 4 HOH A 137 538 167 HOH HOH . D 4 HOH A 138 539 171 HOH HOH . D 4 HOH A 139 540 174 HOH HOH . D 4 HOH A 140 541 175 HOH HOH . D 4 HOH A 141 542 176 HOH HOH . D 4 HOH A 142 543 177 HOH HOH . D 4 HOH A 143 544 178 HOH HOH . D 4 HOH A 144 545 180 HOH HOH . D 4 HOH A 145 546 182 HOH HOH . D 4 HOH A 146 547 186 HOH HOH . D 4 HOH A 147 548 188 HOH HOH . D 4 HOH A 148 549 189 HOH HOH . D 4 HOH A 149 550 190 HOH HOH . D 4 HOH A 150 551 194 HOH HOH . D 4 HOH A 151 552 196 HOH HOH . D 4 HOH A 152 553 197 HOH HOH . D 4 HOH A 153 554 200 HOH HOH . D 4 HOH A 154 555 202 HOH HOH . D 4 HOH A 155 556 208 HOH HOH . D 4 HOH A 156 557 213 HOH HOH . D 4 HOH A 157 558 214 HOH HOH . D 4 HOH A 158 559 215 HOH HOH . D 4 HOH A 159 560 216 HOH HOH . D 4 HOH A 160 561 217 HOH HOH . D 4 HOH A 161 562 218 HOH HOH . D 4 HOH A 162 563 220 HOH HOH . D 4 HOH A 163 564 221 HOH HOH . D 4 HOH A 164 565 222 HOH HOH . D 4 HOH A 165 566 223 HOH HOH . D 4 HOH A 166 567 224 HOH HOH . D 4 HOH A 167 568 225 HOH HOH . D 4 HOH A 168 569 226 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.096 _atom_site.Cartn_y -2.089 _atom_site.Cartn_z 85.859 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #