data_2OYE # _model_server_result.job_id ABzpnQV0ARtFl018y_njhA _model_server_result.datetime_utc '2024-11-24 07:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":700}' # _entry.id 2OYE # _exptl.entry_id 2OYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.909 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL]-N-[(1R)-1-(HYDROXYMETHYL)PROPYL]ACETAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OYE _cell.length_a 181.72 _cell.length_b 181.72 _cell.length_c 104.09 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 272.58 -157.374136 -34.696667 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG T 661 NAG 2 n B NDG 2 A 2 NDG T 662 NDG 3 n C NAG 1 B 1 NAG S 671 NAG 3 n C NAG 2 B 2 NAG S 672 NAG 3 n C BMA 3 B 3 BMA S 673 BMA 3 n C BMA 4 B 4 BMA S 674 BMA 4 n D NAG 1 C 1 NAG U 681 NAG 4 n D NAG 2 C 2 NAG U 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 P CYS 36 1_555 A SG CYS 47 P CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 A SG CYS 37 P CYS 37 1_555 A SG CYS 159 P CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 41 P CYS 41 1_555 A SG CYS 57 P CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 59 P CYS 59 1_555 A SG CYS 69 P CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 569 P CYS 569 1_555 A SG CYS 575 P CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 68 P ASN 68 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A ND2 ASN 144 P ASN 144 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 410 P ASN 410 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 B O4 NAG . A NAG 1 1_555 B C1 NDG . A NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale5 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale6 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale7 C O6 BMA . B BMA 3 1_555 C C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale8 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? metalc ? metalc1 A NE2 HIS 388 P HIS 388 1_555 H FE HEM . P HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C23 H25 Cl N2 O4' _chem_comp.formula_weight 428.909 _chem_comp.id IM8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL]-N-[(1R)-1-(HYDROXYMETHYL)PROPYL]ACETAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 IM8 sing 344 n y C2 C1 IM8 doub 345 n y C2 H2 IM8 sing 346 n n C3 C4 IM8 doub 347 n y C3 O IM8 sing 348 n n C4 C5 IM8 sing 349 n y C4 H4 IM8 sing 350 n n C5 C IM8 doub 351 n y C5 H5 IM8 sing 352 n n C6 O IM8 sing 353 n n C6 H61 IM8 sing 354 n n C6 H62 IM8 sing 355 n n C6 H63 IM8 sing 356 n n C7 C8 IM8 doub 357 n y C7 C1 IM8 sing 358 n y C7 C17 IM8 sing 359 n n C8 C16 IM8 sing 360 n n C8 N IM8 sing 361 n y C9 C10 IM8 sing 362 n n C9 N IM8 sing 363 n n C9 O1 IM8 doub 364 n n C C1 IM8 sing 365 n y C N IM8 sing 366 n y C10 C11 IM8 sing 367 n y C10 C15 IM8 doub 368 n y C11 C12 IM8 doub 369 n y C11 H11 IM8 sing 370 n n C12 C13 IM8 sing 371 n y C12 H12 IM8 sing 372 n n C13 C14 IM8 doub 373 n y C13 CL IM8 sing 374 n n C14 C15 IM8 sing 375 n y C14 H14 IM8 sing 376 n n C15 H15 IM8 sing 377 n n C16 H161 IM8 sing 378 n n C16 H162 IM8 sing 379 n n C16 H163 IM8 sing 380 n n C17 C18 IM8 sing 381 n n C17 H171 IM8 sing 382 n n C17 H172 IM8 sing 383 n n C18 O2 IM8 doub 384 n n C18 N2 IM8 sing 385 n n O3 C20 IM8 sing 386 n n O3 HO3 IM8 sing 387 n n N2 C19 IM8 sing 388 n n N2 HN2 IM8 sing 389 n n C19 C20 IM8 sing 390 n n C19 C21 IM8 sing 391 n n C19 H19 IM8 sing 392 n n C20 H201 IM8 sing 393 n n C20 H202 IM8 sing 394 n n C21 C22 IM8 sing 395 n n C21 H211 IM8 sing 396 n n C21 H212 IM8 sing 397 n n C22 H221 IM8 sing 398 n n C22 H222 IM8 sing 399 n n C22 H223 IM8 sing 400 n n # _atom_sites.entry_id 2OYE _atom_sites.fract_transf_matrix[1][1] 0.005503 _atom_sites.fract_transf_matrix[1][2] 0.003177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BOG P 1 750 750 BOG BOG . F 5 BOG P 1 751 751 BOG BOG . G 6 FLC P 1 900 900 FLC FLC . H 7 HEM P 1 601 601 HEM HEM . I 8 IM8 P 1 700 700 IM8 IM8 . J 9 HOH P 1 901 1 HOH HOH . J 9 HOH P 2 902 2 HOH HOH . J 9 HOH P 3 903 3 HOH HOH . J 9 HOH P 4 904 4 HOH HOH . J 9 HOH P 5 905 5 HOH HOH . J 9 HOH P 6 906 6 HOH HOH . J 9 HOH P 7 907 7 HOH HOH . J 9 HOH P 8 908 8 HOH HOH . J 9 HOH P 9 909 9 HOH HOH . J 9 HOH P 10 910 11 HOH HOH . J 9 HOH P 11 911 13 HOH HOH . J 9 HOH P 12 912 14 HOH HOH . J 9 HOH P 13 913 16 HOH HOH . J 9 HOH P 14 914 17 HOH HOH . J 9 HOH P 15 915 18 HOH HOH . J 9 HOH P 16 916 19 HOH HOH . J 9 HOH P 17 917 20 HOH HOH . J 9 HOH P 18 918 21 HOH HOH . J 9 HOH P 19 919 26 HOH HOH . J 9 HOH P 20 920 27 HOH HOH . J 9 HOH P 21 921 28 HOH HOH . J 9 HOH P 22 922 31 HOH HOH . J 9 HOH P 23 923 32 HOH HOH . J 9 HOH P 24 924 35 HOH HOH . J 9 HOH P 25 925 36 HOH HOH . J 9 HOH P 26 926 37 HOH HOH . J 9 HOH P 27 927 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 IM8 . . . I 8 252.998 109.024 -41.268 1 81.76 ? C2 IM8 700 P 1 HETATM 2 C C3 IM8 . . . I 8 252.698 108.384 -42.519 1 81.76 ? C3 IM8 700 P 1 HETATM 3 C C4 IM8 . . . I 8 251.923 107.143 -42.533 1 81.76 ? C4 IM8 700 P 1 HETATM 4 C C5 IM8 . . . I 8 251.462 106.552 -41.359 1 81.76 ? C5 IM8 700 P 1 HETATM 5 C C6 IM8 . . . I 8 252.971 108.373 -44.981 1 81.76 ? C6 IM8 700 P 1 HETATM 6 C C7 IM8 . . . I 8 252.725 108.884 -38.818 1 81.76 ? C7 IM8 700 P 1 HETATM 7 C C8 IM8 . . . I 8 252.087 107.937 -38.041 1 81.76 ? C8 IM8 700 P 1 HETATM 8 C C9 IM8 . . . I 8 250.858 105.857 -38.329 1 81.76 ? C9 IM8 700 P 1 HETATM 9 C C IM8 . . . I 8 251.778 107.208 -40.14 1 81.76 ? C IM8 700 P 1 HETATM 10 C C1 IM8 . . . I 8 252.506 108.382 -40.121 1 81.76 ? C1 IM8 700 P 1 HETATM 11 C C10 IM8 . . . I 8 249.552 105.35 -38.881 1 81.76 ? C10 IM8 700 P 1 HETATM 12 C C11 IM8 . . . I 8 248.616 106.197 -39.536 1 81.76 ? C11 IM8 700 P 1 HETATM 13 C C12 IM8 . . . I 8 247.401 105.655 -40.042 1 81.76 ? C12 IM8 700 P 1 HETATM 14 C C13 IM8 . . . I 8 247.101 104.262 -39.897 1 81.76 ? C13 IM8 700 P 1 HETATM 15 C C14 IM8 . . . I 8 248.024 103.409 -39.242 1 81.76 ? C14 IM8 700 P 1 HETATM 16 C C15 IM8 . . . I 8 249.237 103.949 -38.741 1 81.76 ? C15 IM8 700 P 1 HETATM 17 C C16 IM8 . . . I 8 252.081 107.975 -36.538 1 81.76 ? C16 IM8 700 P 1 HETATM 18 C C17 IM8 . . . I 8 253.492 110.144 -38.365 1 81.76 ? C17 IM8 700 P 1 HETATM 19 C C18 IM8 . . . I 8 252.825 111.382 -38.051 1 81.76 ? C18 IM8 700 P 1 HETATM 20 N N IM8 . . . I 8 251.517 106.937 -38.814 1 81.76 ? N IM8 700 P 1 HETATM 21 O O IM8 . . . I 8 253.154 108.994 -43.72 1 81.76 ? O IM8 700 P 1 HETATM 22 O O1 IM8 . . . I 8 251.347 105.214 -37.419 1 81.76 ? O1 IM8 700 P 1 HETATM 23 O O2 IM8 . . . I 8 252.3 111.555 -36.931 1 81.76 ? O2 IM8 700 P 1 HETATM 24 O O3 IM8 . . . I 8 249.971 113.282 -39.47 1 81.76 ? O3 IM8 700 P 1 HETATM 25 CL CL IM8 . . . I 8 245.632 103.612 -40.51 1 81.76 ? CL IM8 700 P 1 HETATM 26 N N2 IM8 . . . I 8 252.835 112.298 -39.038 1 81.76 ? N2 IM8 700 P 1 HETATM 27 C C19 IM8 . . . I 8 252.368 113.709 -38.954 1 81.76 ? C19 IM8 700 P 1 HETATM 28 C C20 IM8 . . . I 8 250.899 113.792 -38.534 1 81.76 ? C20 IM8 700 P 1 HETATM 29 C C21 IM8 . . . I 8 253.268 114.55 -38.01 1 81.76 ? C21 IM8 700 P 1 HETATM 30 C C22 IM8 . . . I 8 254.794 114.484 -38.315 1 81.76 ? C22 IM8 700 P 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #