data_2OYE # _model_server_result.job_id Mw-tqRitSb-6F8d0kO-IkQ _model_server_result.datetime_utc '2024-10-30 06:12:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":750}' # _entry.id 2OYE # _exptl.entry_id 2OYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OYE _cell.length_a 181.72 _cell.length_b 181.72 _cell.length_c 104.09 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 272.58 -157.374136 -34.696667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG T 661 NAG 2 n B NDG 2 A 2 NDG T 662 NDG 3 n C NAG 1 B 1 NAG S 671 NAG 3 n C NAG 2 B 2 NAG S 672 NAG 3 n C BMA 3 B 3 BMA S 673 BMA 3 n C BMA 4 B 4 BMA S 674 BMA 4 n D NAG 1 C 1 NAG U 681 NAG 4 n D NAG 2 C 2 NAG U 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 P CYS 36 1_555 A SG CYS 47 P CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 A SG CYS 37 P CYS 37 1_555 A SG CYS 159 P CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 41 P CYS 41 1_555 A SG CYS 57 P CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 59 P CYS 59 1_555 A SG CYS 69 P CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 A SG CYS 569 P CYS 569 1_555 A SG CYS 575 P CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 68 P ASN 68 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 A ND2 ASN 144 P ASN 144 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale3 A ND2 ASN 410 P ASN 410 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 B O4 NAG . A NAG 1 1_555 B C1 NDG . A NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale5 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale6 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale7 C O6 BMA . B BMA 3 1_555 C C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale8 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? metalc ? metalc1 A NE2 HIS 388 P HIS 388 1_555 H FE HEM . P HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 94 n n C1 C2 BOG sing 95 n n C1 O5 BOG sing 96 n n C1 H1 BOG sing 97 n n O1 C1' BOG sing 98 n n C2 O2 BOG sing 99 n n C2 C3 BOG sing 100 n n C2 H2 BOG sing 101 n n O2 HO2 BOG sing 102 n n C3 O3 BOG sing 103 n n C3 C4 BOG sing 104 n n C3 H3 BOG sing 105 n n O3 HO3 BOG sing 106 n n C4 O4 BOG sing 107 n n C4 C5 BOG sing 108 n n C4 H4 BOG sing 109 n n O4 HO4 BOG sing 110 n n C5 O5 BOG sing 111 n n C5 C6 BOG sing 112 n n C5 H5 BOG sing 113 n n C6 O6 BOG sing 114 n n C6 H61 BOG sing 115 n n C6 H62 BOG sing 116 n n O6 HO6 BOG sing 117 n n C1' C2' BOG sing 118 n n C1' "H1'1" BOG sing 119 n n C1' "H1'2" BOG sing 120 n n C2' C3' BOG sing 121 n n C2' "H2'1" BOG sing 122 n n C2' "H2'2" BOG sing 123 n n C3' C4' BOG sing 124 n n C3' "H3'1" BOG sing 125 n n C3' "H3'2" BOG sing 126 n n C4' C5' BOG sing 127 n n C4' "H4'1" BOG sing 128 n n C4' "H4'2" BOG sing 129 n n C5' C6' BOG sing 130 n n C5' "H5'1" BOG sing 131 n n C5' "H5'2" BOG sing 132 n n C6' C7' BOG sing 133 n n C6' "H6'1" BOG sing 134 n n C6' "H6'2" BOG sing 135 n n C7' C8' BOG sing 136 n n C7' "H7'1" BOG sing 137 n n C7' "H7'2" BOG sing 138 n n C8' "H8'1" BOG sing 139 n n C8' "H8'2" BOG sing 140 n n C8' "H8'3" BOG sing 141 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2OYE _atom_sites.fract_transf_matrix[1][1] 0.005503 _atom_sites.fract_transf_matrix[1][2] 0.003177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 BOG P 1 750 750 BOG BOG . F 5 BOG P 1 751 751 BOG BOG . G 6 FLC P 1 900 900 FLC FLC . H 7 HEM P 1 601 601 HEM HEM . I 8 IM8 P 1 700 700 IM8 IM8 . J 9 HOH P 1 901 1 HOH HOH . J 9 HOH P 2 902 2 HOH HOH . J 9 HOH P 3 903 3 HOH HOH . J 9 HOH P 4 904 4 HOH HOH . J 9 HOH P 5 905 5 HOH HOH . J 9 HOH P 6 906 6 HOH HOH . J 9 HOH P 7 907 7 HOH HOH . J 9 HOH P 8 908 8 HOH HOH . J 9 HOH P 9 909 9 HOH HOH . J 9 HOH P 10 910 11 HOH HOH . J 9 HOH P 11 911 13 HOH HOH . J 9 HOH P 12 912 14 HOH HOH . J 9 HOH P 13 913 16 HOH HOH . J 9 HOH P 14 914 17 HOH HOH . J 9 HOH P 15 915 18 HOH HOH . J 9 HOH P 16 916 19 HOH HOH . J 9 HOH P 17 917 20 HOH HOH . J 9 HOH P 18 918 21 HOH HOH . J 9 HOH P 19 919 26 HOH HOH . J 9 HOH P 20 920 27 HOH HOH . J 9 HOH P 21 921 28 HOH HOH . J 9 HOH P 22 922 31 HOH HOH . J 9 HOH P 23 923 32 HOH HOH . J 9 HOH P 24 924 35 HOH HOH . J 9 HOH P 25 925 36 HOH HOH . J 9 HOH P 26 926 37 HOH HOH . J 9 HOH P 27 927 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . E 5 254.302 122.051 -51.263 1 61.45 ? C1 BOG 750 P 1 HETATM 2 O O1 BOG . . . E 5 255.287 122.94 -51.685 1 61.45 ? O1 BOG 750 P 1 HETATM 3 C C2 BOG . . . E 5 252.913 122.77 -51.224 1 61.45 ? C2 BOG 750 P 1 HETATM 4 O O2 BOG . . . E 5 252.887 123.703 -50.136 1 61.45 ? O2 BOG 750 P 1 HETATM 5 C C3 BOG . . . E 5 251.755 121.743 -51.07 1 61.45 ? C3 BOG 750 P 1 HETATM 6 O O3 BOG . . . E 5 250.481 122.382 -51.182 1 61.45 ? O3 BOG 750 P 1 HETATM 7 C C4 BOG . . . E 5 251.895 120.656 -52.143 1 61.45 ? C4 BOG 750 P 1 HETATM 8 O O4 BOG . . . E 5 250.822 119.73 -52.05 1 61.45 ? O4 BOG 750 P 1 HETATM 9 C C5 BOG . . . E 5 253.254 119.969 -51.909 1 61.45 ? C5 BOG 750 P 1 HETATM 10 O O5 BOG . . . E 5 254.311 120.926 -52.177 1 61.45 ? O5 BOG 750 P 1 HETATM 11 C C6 BOG . . . E 5 253.521 118.707 -52.74 1 61.45 ? C6 BOG 750 P 1 HETATM 12 O O6 BOG . . . E 5 253.748 118.993 -54.116 1 61.45 ? O6 BOG 750 P 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #