data_2OYU # _model_server_result.job_id y9PkZ1qB2OlbDKX0XKuMjw _model_server_result.datetime_utc '2024-10-30 08:24:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oyu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":700}' # _entry.id 2OYU # _exptl.entry_id 2OYU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.909 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL]-N-[(1S)-1-(HYDROXYMETHYL)PROPYL]ACETAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OYU _cell.length_a 181.41 _cell.length_b 181.41 _cell.length_c 103.398 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OYU _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 68.932 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 A 1 NAG S 661 NAG 2 n B NAG 2 A 2 NAG S 662 NAG 3 n C NAG 1 B 1 NAG S 671 NAG 3 n C NAG 2 B 2 NAG S 672 NAG 3 n C BMA 3 B 3 BMA S 673 BMA 2 n D NAG 1 C 1 NAG S 681 NAG 2 n D NAG 2 C 2 NAG S 682 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 P CYS 36 1_555 A SG CYS 47 P CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf2 A SG CYS 37 P CYS 37 1_555 A SG CYS 159 P CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 41 P CYS 41 1_555 A SG CYS 57 P CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 59 P CYS 59 1_555 A SG CYS 69 P CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 569 P CYS 569 1_555 A SG CYS 575 P CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A ND2 ASN 68 P ASN 68 1_555 B C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 144 P ASN 144 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 A ND2 ASN 410 P ASN 410 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 B O4 NAG . A NAG 1 1_555 B C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale6 C O4 NAG . B NAG 2 1_555 C C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale7 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? metalc ? metalc1 A NE2 HIS 388 P HIS 388 1_555 H FE HEM . P HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? # _chem_comp.formula 'C23 H25 Cl N2 O4' _chem_comp.formula_weight 428.909 _chem_comp.id IMS _chem_comp.mon_nstd_flag . _chem_comp.name 2-[1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL]-N-[(1S)-1-(HYDROXYMETHYL)PROPYL]ACETAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 IMS doub 327 n y C2 C1 IMS sing 328 n y C2 H2 IMS sing 329 n n C3 C4 IMS sing 330 n y C3 O IMS sing 331 n n C4 C5 IMS doub 332 n y C4 H4 IMS sing 333 n n C5 C IMS sing 334 n y C5 H5 IMS sing 335 n n C6 O IMS sing 336 n n C6 H61 IMS sing 337 n n C6 H62 IMS sing 338 n n C6 H63 IMS sing 339 n n C7 C8 IMS doub 340 n y C7 C17 IMS sing 341 n n C7 C1 IMS sing 342 n y C8 C16 IMS sing 343 n n C8 N IMS sing 344 n y C9 N IMS sing 345 n n C9 O1 IMS doub 346 n n C9 C10 IMS sing 347 n n O2 C18 IMS doub 348 n n C18 N2 IMS sing 349 n n C18 C17 IMS sing 350 n n N2 C19 IMS sing 351 n n N2 HN2 IMS sing 352 n n C19 C21 IMS sing 353 n n C19 C20 IMS sing 354 n n C19 H19 IMS sing 355 n n C21 C22 IMS sing 356 n n C21 H211 IMS sing 357 n n C21 H212 IMS sing 358 n n C22 H221 IMS sing 359 n n C22 H222 IMS sing 360 n n C22 H223 IMS sing 361 n n C20 O3 IMS sing 362 n n C20 H201 IMS sing 363 n n C20 H202 IMS sing 364 n n O3 HO3 IMS sing 365 n n C17 H171 IMS sing 366 n n C17 H172 IMS sing 367 n n C1 C IMS doub 368 n y C16 H161 IMS sing 369 n n C16 H162 IMS sing 370 n n C16 H163 IMS sing 371 n n N C IMS sing 372 n y C10 C15 IMS sing 373 n y C10 C11 IMS doub 374 n y C15 C14 IMS doub 375 n y C15 H15 IMS sing 376 n n C14 C13 IMS sing 377 n y C14 H14 IMS sing 378 n n C13 CL IMS sing 379 n n C13 C12 IMS doub 380 n y C12 C11 IMS sing 381 n y C12 H12 IMS sing 382 n n C11 H11 IMS sing 383 n n # _atom_sites.entry_id 2OYU _atom_sites.fract_transf_matrix[1][1] 0.005512 _atom_sites.fract_transf_matrix[1][2] 0.003183 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 BOG P 1 750 750 BOG BOG . F 4 BOG P 1 751 751 BOG BOG . G 5 IMS P 1 700 700 IMS IMS . H 6 HEM P 1 601 601 HEM HEM . I 7 HOH P 1 752 1 HOH HOH . I 7 HOH P 2 753 2 HOH HOH . I 7 HOH P 3 754 3 HOH HOH . I 7 HOH P 4 755 4 HOH HOH . I 7 HOH P 5 756 5 HOH HOH . I 7 HOH P 6 757 6 HOH HOH . I 7 HOH P 7 758 7 HOH HOH . I 7 HOH P 8 759 8 HOH HOH . I 7 HOH P 9 760 9 HOH HOH . I 7 HOH P 10 761 10 HOH HOH . I 7 HOH P 11 762 11 HOH HOH . I 7 HOH P 12 763 12 HOH HOH . I 7 HOH P 13 764 13 HOH HOH . I 7 HOH P 14 765 14 HOH HOH . I 7 HOH P 15 766 15 HOH HOH . I 7 HOH P 16 767 16 HOH HOH . I 7 HOH P 17 768 17 HOH HOH . I 7 HOH P 18 769 18 HOH HOH . I 7 HOH P 19 770 19 HOH HOH . I 7 HOH P 20 771 20 HOH HOH . I 7 HOH P 21 772 21 HOH HOH . I 7 HOH P 22 773 22 HOH HOH . I 7 HOH P 23 774 23 HOH HOH . I 7 HOH P 24 775 24 HOH HOH . I 7 HOH P 25 776 25 HOH HOH . I 7 HOH P 26 777 26 HOH HOH . I 7 HOH P 27 778 27 HOH HOH . I 7 HOH P 28 779 28 HOH HOH . I 7 HOH P 29 780 29 HOH HOH . I 7 HOH P 30 781 30 HOH HOH . I 7 HOH P 31 782 31 HOH HOH . I 7 HOH P 32 783 32 HOH HOH . I 7 HOH P 33 784 33 HOH HOH . I 7 HOH P 34 785 34 HOH HOH . I 7 HOH P 35 786 35 HOH HOH . I 7 HOH P 36 787 36 HOH HOH . I 7 HOH P 37 788 37 HOH HOH . I 7 HOH P 38 789 38 HOH HOH . I 7 HOH P 39 790 39 HOH HOH . I 7 HOH P 40 791 40 HOH HOH . I 7 HOH P 41 792 41 HOH HOH . I 7 HOH P 42 793 42 HOH HOH . I 7 HOH P 43 794 43 HOH HOH . I 7 HOH P 44 795 44 HOH HOH . I 7 HOH P 45 796 45 HOH HOH . I 7 HOH P 46 797 46 HOH HOH . I 7 HOH P 47 798 47 HOH HOH . I 7 HOH P 48 799 48 HOH HOH . I 7 HOH P 49 800 49 HOH HOH . I 7 HOH P 50 801 50 HOH HOH . I 7 HOH P 51 802 51 HOH HOH . I 7 HOH P 52 803 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 IMS . . . G 5 22.293 51.506 11.612 1 59.62 ? C2 IMS 700 P 1 HETATM 2 C C3 IMS . . . G 5 23.173 51.98 12.579 1 59.36 ? C3 IMS 700 P 1 HETATM 3 C C4 IMS . . . G 5 23.172 51.371 13.825 1 59.52 ? C4 IMS 700 P 1 HETATM 4 C C5 IMS . . . G 5 22.317 50.3 14.105 1 59.75 ? C5 IMS 700 P 1 HETATM 5 C C6 IMS . . . G 5 25.421 53.02 12.475 1 58.77 ? C6 IMS 700 P 1 HETATM 6 C C7 IMS . . . G 5 20.49 49.805 11.086 1 59.42 ? C7 IMS 700 P 1 HETATM 7 C C8 IMS . . . G 5 19.919 48.807 11.858 1 59.33 ? C8 IMS 700 P 1 HETATM 8 C C9 IMS . . . G 5 20.222 47.993 14.064 1 59.68 ? C9 IMS 700 P 1 HETATM 9 O O2 IMS . . . G 5 20.014 48.006 8.749 1 57.43 ? O2 IMS 700 P 1 HETATM 10 C C18 IMS . . . G 5 19.833 49.203 8.607 1 58.81 ? C18 IMS 700 P 1 HETATM 11 N N2 IMS . . . G 5 19.334 49.846 7.539 1 58.59 ? N2 IMS 700 P 1 HETATM 12 C C19 IMS . . . G 5 18.853 49.461 6.207 1 58.56 ? C19 IMS 700 P 1 HETATM 13 C C21 IMS . . . G 5 20.092 49.454 5.319 1 58.25 ? C21 IMS 700 P 1 HETATM 14 C C22 IMS . . . G 5 21.028 48.314 5.619 1 58.13 ? C22 IMS 700 P 1 HETATM 15 C C20 IMS . . . G 5 18.116 48.118 6.174 1 59.37 ? C20 IMS 700 P 1 HETATM 16 O O3 IMS . . . G 5 17.181 48.114 5.071 1 58.79 ? O3 IMS 700 P 1 HETATM 17 C C17 IMS . . . G 5 20.176 50.221 9.67 1 59.22 ? C17 IMS 700 P 1 HETATM 18 C C1 IMS . . . G 5 21.437 50.438 11.895 1 59.74 ? C1 IMS 700 P 1 HETATM 19 C C16 IMS . . . G 5 18.857 47.848 11.439 1 59.58 ? C16 IMS 700 P 1 HETATM 20 N N IMS . . . G 5 20.513 48.876 13.048 1 59.5 ? N IMS 700 P 1 HETATM 21 C C IMS . . . G 5 21.445 49.825 13.134 1 59.57 ? C IMS 700 P 1 HETATM 22 O O IMS . . . G 5 24.002 53.048 12.304 1 59.45 ? O IMS 700 P 1 HETATM 23 O O1 IMS . . . G 5 20.948 47.056 14.359 1 60.16 ? O1 IMS 700 P 1 HETATM 24 C C10 IMS . . . G 5 19.001 48.07 14.883 1 59.68 ? C10 IMS 700 P 1 HETATM 25 C C15 IMS . . . G 5 17.793 48.481 14.357 1 59.83 ? C15 IMS 700 P 1 HETATM 26 C C14 IMS . . . G 5 16.683 48.52 15.173 1 59.84 ? C14 IMS 700 P 1 HETATM 27 C C13 IMS . . . G 5 16.81 48.129 16.497 1 60.39 ? C13 IMS 700 P 1 HETATM 28 CL CL IMS . . . G 5 15.626 48.151 17.423 1 60.34 ? CL IMS 700 P 1 HETATM 29 C C12 IMS . . . G 5 18.031 47.706 17.002 1 60.39 ? C12 IMS 700 P 1 HETATM 30 C C11 IMS . . . G 5 19.137 47.663 16.189 1 59.62 ? C11 IMS 700 P 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #