data_2OYY # _model_server_result.job_id nhQL4l1DKtvrs3vt2uU5xQ _model_server_result.datetime_utc '2025-09-03 21:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":9001}' # _entry.id 2OYY # _exptl.entry_id 2OYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OYY _cell.length_a 173.71 _cell.length_b 173.71 _cell.length_c 45.88 _cell.Z_PDB 72 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA 24-meric 24 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,K,L,M 1 1,2,3 C,D,E,F,G,H,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 2 1 A,B,I,J,K,L,M 3 4,5,6 C,D,E,F,G,H,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 3 1,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_455 x-1/3,y+1/3,z+1/3 1 0 0 0 1 0 0 0 1 -86.855 50.145758 15.293333 5 'crystal symmetry operation' 5_455 -y-1/3,x-y+1/3,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -86.855 50.145758 15.293333 6 'crystal symmetry operation' 6_455 -x+y-1/3,-x+1/3,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -86.855 50.145758 15.293333 7 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -86.855 150.437273 0 8 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -173.71 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 T N N ? 2 U N N ? 2 W N N ? 2 Y N N ? 2 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 46 A TYR 43 1_555 J FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 B OH TYR 46 B TYR 43 1_555 M FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc3 C OH TYR 46 C TYR 43 1_555 P FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 D OH TYR 46 D TYR 43 1_555 S FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 E OH TYR 46 E TYR 43 1_555 V FE HEM . E HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 F OH TYR 46 F TYR 43 1_555 X FE HEM . F HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc7 G OH TYR 46 G TYR 43 1_555 Z FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc8 H OH TYR 46 H TYR 43 1_555 BA FE HEM . H HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2OYY _atom_sites.fract_transf_matrix[1][1] 0.005757 _atom_sites.fract_transf_matrix[1][2] 0.003324 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IOD A 1 9001 9001 IOD IOD . J 3 HEM A 1 201 201 HEM HEM . K 2 IOD B 1 9001 9001 IOD IOD . L 2 IOD B 1 9005 9005 IOD IOD . M 3 HEM B 1 201 201 HEM HEM . N 2 IOD C 1 9001 9001 IOD IOD . O 2 IOD C 1 9003 9003 IOD IOD . P 3 HEM C 1 201 201 HEM HEM . Q 2 IOD D 1 9001 9001 IOD IOD . R 2 IOD D 1 9002 9002 IOD IOD . S 3 HEM D 1 201 201 HEM HEM . T 2 IOD E 1 9001 9001 IOD IOD . U 2 IOD E 1 9004 9004 IOD IOD . V 3 HEM E 1 201 201 HEM HEM . W 2 IOD F 1 9001 9001 IOD IOD . X 3 HEM F 1 201 201 HEM HEM . Y 2 IOD G 1 9001 9001 IOD IOD . Z 3 HEM G 1 201 201 HEM HEM . AA 2 IOD H 1 9001 9001 IOD IOD . BA 3 HEM H 1 201 201 HEM HEM . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -17.79 _atom_site.Cartn_y 9.007 _atom_site.Cartn_z 8.447 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 9001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #