data_2OZ0 # _model_server_result.job_id qrbb0DZYF38FUAuYQzhMgA _model_server_result.datetime_utc '2024-11-19 05:15:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":560}' # _entry.id 2OZ0 # _exptl.entry_id 2OZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OZ0 _cell.length_a 163.689 _cell.length_b 163.689 _cell.length_c 112.021 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 74.680667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 43 A HIS 43 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 183 n n CHA C4D HEM doub 184 n n CHA HHA HEM sing 185 n n CHB C4A HEM sing 186 n n CHB C1B HEM doub 187 n n CHB HHB HEM sing 188 n n CHC C4B HEM sing 189 n n CHC C1C HEM doub 190 n n CHC HHC HEM sing 191 n n CHD C4C HEM doub 192 n n CHD C1D HEM sing 193 n n CHD HHD HEM sing 194 n n C1A C2A HEM doub 195 n y C1A NA HEM sing 196 n y C2A C3A HEM sing 197 n y C2A CAA HEM sing 198 n n C3A C4A HEM doub 199 n y C3A CMA HEM sing 200 n n C4A NA HEM sing 201 n y CMA HMA HEM sing 202 n n CMA HMAA HEM sing 203 n n CMA HMAB HEM sing 204 n n CAA CBA HEM sing 205 n n CAA HAA HEM sing 206 n n CAA HAAA HEM sing 207 n n CBA CGA HEM sing 208 n n CBA HBA HEM sing 209 n n CBA HBAA HEM sing 210 n n CGA O1A HEM doub 211 n n CGA O2A HEM sing 212 n n C1B C2B HEM sing 213 n n C1B NB HEM sing 214 n n C2B C3B HEM doub 215 n n C2B CMB HEM sing 216 n n C3B C4B HEM sing 217 n n C3B CAB HEM sing 218 n n C4B NB HEM doub 219 n n CMB HMB HEM sing 220 n n CMB HMBA HEM sing 221 n n CMB HMBB HEM sing 222 n n CAB CBB HEM doub 223 n n CAB HAB HEM sing 224 n n CBB HBB HEM sing 225 n n CBB HBBA HEM sing 226 n n C1C C2C HEM sing 227 n y C1C NC HEM sing 228 n y C2C C3C HEM doub 229 n y C2C CMC HEM sing 230 n n C3C C4C HEM sing 231 n y C3C CAC HEM sing 232 n n C4C NC HEM sing 233 n y CMC HMC HEM sing 234 n n CMC HMCA HEM sing 235 n n CMC HMCB HEM sing 236 n n CAC CBC HEM doub 237 n n CAC HAC HEM sing 238 n n CBC HBC HEM sing 239 n n CBC HBCA HEM sing 240 n n C1D C2D HEM sing 241 n n C1D ND HEM doub 242 n n C2D C3D HEM doub 243 n n C2D CMD HEM sing 244 n n C3D C4D HEM sing 245 n n C3D CAD HEM sing 246 n n C4D ND HEM sing 247 n n CMD HMD HEM sing 248 n n CMD HMDA HEM sing 249 n n CMD HMDB HEM sing 250 n n CAD CBD HEM sing 251 n n CAD HAD HEM sing 252 n n CAD HADA HEM sing 253 n n CBD CGD HEM sing 254 n n CBD HBD HEM sing 255 n n CBD HBDA HEM sing 256 n n CGD O1D HEM doub 257 n n CGD O2D HEM sing 258 n n O2A H2A HEM sing 259 n n O2D H2D HEM sing 260 n n FE NA HEM sing 261 n n FE NB HEM sing 262 n n FE NC HEM sing 263 n n FE ND HEM sing 264 n n # _atom_sites.entry_id 2OZ0 _atom_sites.fract_transf_matrix[1][1] 0.006109 _atom_sites.fract_transf_matrix[1][2] 0.003527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 560 560 HEM HEM . D 3 FMN A 1 569 569 FMN FMN . E 3 FMN B 1 570 570 FMN FMN . F 4 PYR B 1 571 571 PYR PYR . G 5 HOH A 1 579 579 HOH HOH . G 5 HOH A 2 581 581 HOH HOH . G 5 HOH A 3 582 582 HOH HOH . G 5 HOH A 4 583 583 HOH HOH . G 5 HOH A 5 584 584 HOH HOH . G 5 HOH A 6 585 585 HOH HOH . G 5 HOH A 7 586 586 HOH HOH . H 5 HOH B 1 577 577 HOH HOH . H 5 HOH B 2 578 578 HOH HOH . H 5 HOH B 3 580 580 HOH HOH . H 5 HOH B 4 587 587 HOH HOH . H 5 HOH B 5 588 588 HOH HOH . H 5 HOH B 6 589 589 HOH HOH . H 5 HOH B 7 590 590 HOH HOH . H 5 HOH B 8 591 591 HOH HOH . H 5 HOH B 9 592 592 HOH HOH . H 5 HOH B 10 593 593 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -77.996 60.36 45.353 1 100.07 ? CHA HEM 560 A 1 HETATM 2 C CHB HEM . . . C 2 -80.375 56.128 45.703 1 98.89 ? CHB HEM 560 A 1 HETATM 3 C CHC HEM . . . C 2 -83.546 58.4 48.627 1 95.83 ? CHC HEM 560 A 1 HETATM 4 C CHD HEM . . . C 2 -81.351 62.492 47.836 1 97.92 ? CHD HEM 560 A 1 HETATM 5 C C1A HEM . . . C 2 -78.45 59.091 45.235 1 102.48 ? C1A HEM 560 A 1 HETATM 6 C C2A HEM . . . C 2 -77.702 58.202 44.381 1 105.69 ? C2A HEM 560 A 1 HETATM 7 C C3A HEM . . . C 2 -78.354 57.041 44.431 1 103.34 ? C3A HEM 560 A 1 HETATM 8 C C4A HEM . . . C 2 -79.496 57.117 45.336 1 100.95 ? C4A HEM 560 A 1 HETATM 9 C CMA HEM . . . C 2 -77.856 55.848 43.67 1 101.91 ? CMA HEM 560 A 1 HETATM 10 C CAA HEM . . . C 2 -76.351 58.601 43.643 1 108.76 ? CAA HEM 560 A 1 HETATM 11 C CBA HEM . . . C 2 -75.213 59.142 44.647 1 116.83 ? CBA HEM 560 A 1 HETATM 12 C CGA HEM . . . C 2 -73.63 58.974 44.604 1 120.9 ? CGA HEM 560 A 1 HETATM 13 O O1A HEM . . . C 2 -73.027 58.159 45.375 1 122.45 ? O1A HEM 560 A 1 HETATM 14 O O2A HEM . . . C 2 -72.816 59.691 43.913 1 122.82 ? O2A HEM 560 A 1 HETATM 15 C C1B HEM . . . C 2 -81.409 56.465 46.567 1 96.79 ? C1B HEM 560 A 1 HETATM 16 C C2B HEM . . . C 2 -82.483 55.591 46.91 1 96.56 ? C2B HEM 560 A 1 HETATM 17 C C3B HEM . . . C 2 -83.347 56.23 47.713 1 96.07 ? C3B HEM 560 A 1 HETATM 18 C C4B HEM . . . C 2 -82.851 57.535 47.873 1 94.67 ? C4B HEM 560 A 1 HETATM 19 C CMB HEM . . . C 2 -82.512 54.149 46.385 1 98.56 ? CMB HEM 560 A 1 HETATM 20 C CAB HEM . . . C 2 -84.674 55.775 48.426 1 97.2 ? CAB HEM 560 A 1 HETATM 21 C CBB HEM . . . C 2 -85.534 56.655 49.193 1 92.46 ? CBB HEM 560 A 1 HETATM 22 C C1C HEM . . . C 2 -83.254 59.679 48.704 1 95.09 ? C1C HEM 560 A 1 HETATM 23 C C2C HEM . . . C 2 -83.892 60.645 49.537 1 95.77 ? C2C HEM 560 A 1 HETATM 24 C C3C HEM . . . C 2 -83.267 61.788 49.343 1 93.94 ? C3C HEM 560 A 1 HETATM 25 C C4C HEM . . . C 2 -82.213 61.559 48.368 1 95.74 ? C4C HEM 560 A 1 HETATM 26 C CMC HEM . . . C 2 -85.071 60.385 50.494 1 96.87 ? CMC HEM 560 A 1 HETATM 27 C CAC HEM . . . C 2 -83.643 63.083 50.038 1 90.61 ? CAC HEM 560 A 1 HETATM 28 C CBC HEM . . . C 2 -83.205 64.206 49.498 1 92.7 ? CBC HEM 560 A 1 HETATM 29 C C1D HEM . . . C 2 -80.256 62.348 47.013 1 98.65 ? C1D HEM 560 A 1 HETATM 30 C C2D HEM . . . C 2 -79.419 63.434 46.475 1 99.62 ? C2D HEM 560 A 1 HETATM 31 C C3D HEM . . . C 2 -78.301 62.788 45.672 1 100.51 ? C3D HEM 560 A 1 HETATM 32 C C4D HEM . . . C 2 -78.672 61.384 45.836 1 99.85 ? C4D HEM 560 A 1 HETATM 33 C CMD HEM . . . C 2 -79.585 64.951 46.705 1 100.15 ? CMD HEM 560 A 1 HETATM 34 C CAD HEM . . . C 2 -77.098 63.474 44.904 1 100.99 ? CAD HEM 560 A 1 HETATM 35 C CBD HEM . . . C 2 -75.963 64.122 45.782 1 108.96 ? CBD HEM 560 A 1 HETATM 36 C CGD HEM . . . C 2 -74.433 63.765 45.702 1 110.93 ? CGD HEM 560 A 1 HETATM 37 O O1D HEM . . . C 2 -73.54 64.648 45.351 1 109.22 ? O1D HEM 560 A 1 HETATM 38 O O2D HEM . . . C 2 -74.081 62.586 46.059 1 108.92 ? O2D HEM 560 A 1 HETATM 39 N NA HEM . . . C 2 -79.544 58.437 45.805 1 99.37 ? NA HEM 560 A 1 HETATM 40 N NB HEM . . . C 2 -81.688 57.674 47.187 1 94.91 ? NB HEM 560 A 1 HETATM 41 N NC HEM . . . C 2 -82.249 60.241 48.005 1 95.85 ? NC HEM 560 A 1 HETATM 42 N ND HEM . . . C 2 -79.792 61.14 46.595 1 97.92 ? ND HEM 560 A 1 HETATM 43 FE FE HEM . . . C 2 -81.06 59.403 46.872 1 97.11 ? FE HEM 560 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #