data_2OZ0 # _model_server_result.job_id Z6TNmJgFknXLNORlkpgqQA _model_server_result.datetime_utc '2024-11-19 05:18:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":569}' # _entry.id 2OZ0 # _exptl.entry_id 2OZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OZ0 _cell.length_a 163.689 _cell.length_b 163.689 _cell.length_c 112.021 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 74.680667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 43 A HIS 43 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2OZ0 _atom_sites.fract_transf_matrix[1][1] 0.006109 _atom_sites.fract_transf_matrix[1][2] 0.003527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 560 560 HEM HEM . D 3 FMN A 1 569 569 FMN FMN . E 3 FMN B 1 570 570 FMN FMN . F 4 PYR B 1 571 571 PYR PYR . G 5 HOH A 1 579 579 HOH HOH . G 5 HOH A 2 581 581 HOH HOH . G 5 HOH A 3 582 582 HOH HOH . G 5 HOH A 4 583 583 HOH HOH . G 5 HOH A 5 584 584 HOH HOH . G 5 HOH A 6 585 585 HOH HOH . G 5 HOH A 7 586 586 HOH HOH . H 5 HOH B 1 577 577 HOH HOH . H 5 HOH B 2 578 578 HOH HOH . H 5 HOH B 3 580 580 HOH HOH . H 5 HOH B 4 587 587 HOH HOH . H 5 HOH B 5 588 588 HOH HOH . H 5 HOH B 6 589 589 HOH HOH . H 5 HOH B 7 590 590 HOH HOH . H 5 HOH B 8 591 591 HOH HOH . H 5 HOH B 9 592 592 HOH HOH . H 5 HOH B 10 593 593 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 -67.313 53.123 38.762 1 12.15 ? N1 FMN 569 A 1 HETATM 2 C C2 FMN . . . D 3 -68.122 52.077 39.042 1 12.69 ? C2 FMN 569 A 1 HETATM 3 O O2 FMN . . . D 3 -67.862 50.902 38.976 1 10.75 ? O2 FMN 569 A 1 HETATM 4 N N3 FMN . . . D 3 -69.448 52.424 39.355 1 13.95 ? N3 FMN 569 A 1 HETATM 5 C C4 FMN . . . D 3 -69.989 53.659 39.441 1 13.7 ? C4 FMN 569 A 1 HETATM 6 O O4 FMN . . . D 3 -71.108 53.788 39.878 1 13.89 ? O4 FMN 569 A 1 HETATM 7 C C4A FMN . . . D 3 -69.032 54.76 39.241 1 14.55 ? C4A FMN 569 A 1 HETATM 8 N N5 FMN . . . D 3 -69.408 56.021 39.353 1 15.02 ? N5 FMN 569 A 1 HETATM 9 C C5A FMN . . . D 3 -68.589 57.026 38.924 1 12.9 ? C5A FMN 569 A 1 HETATM 10 C C6 FMN . . . D 3 -68.989 58.361 38.831 1 14.48 ? C6 FMN 569 A 1 HETATM 11 C C7 FMN . . . D 3 -68.179 59.38 38.401 1 13.62 ? C7 FMN 569 A 1 HETATM 12 C C7M FMN . . . D 3 -68.594 60.829 38.366 1 13.76 ? C7M FMN 569 A 1 HETATM 13 C C8 FMN . . . D 3 -66.902 59.034 37.907 1 14.28 ? C8 FMN 569 A 1 HETATM 14 C C8M FMN . . . D 3 -65.909 60.081 37.423 1 14.19 ? C8M FMN 569 A 1 HETATM 15 C C9 FMN . . . D 3 -66.47 57.728 37.966 1 13.17 ? C9 FMN 569 A 1 HETATM 16 C C9A FMN . . . D 3 -67.288 56.695 38.417 1 13.14 ? C9A FMN 569 A 1 HETATM 17 N N10 FMN . . . D 3 -66.888 55.389 38.466 1 13.05 ? N10 FMN 569 A 1 HETATM 18 C C10 FMN . . . D 3 -67.723 54.357 38.826 1 13.21 ? C10 FMN 569 A 1 HETATM 19 C C1' FMN . . . D 3 -65.521 55.028 38.051 1 15.52 ? C1' FMN 569 A 1 HETATM 20 C C2' FMN . . . D 3 -65.34 54.596 36.604 1 16.52 ? C2' FMN 569 A 1 HETATM 21 O O2' FMN . . . D 3 -66.282 53.746 35.954 1 16.42 ? O2' FMN 569 A 1 HETATM 22 C C3' FMN . . . D 3 -63.993 54.798 35.922 1 17.32 ? C3' FMN 569 A 1 HETATM 23 O O3' FMN . . . D 3 -63.258 53.728 36.555 1 16.55 ? O3' FMN 569 A 1 HETATM 24 C C4' FMN . . . D 3 -63.324 56.143 35.768 1 17.85 ? C4' FMN 569 A 1 HETATM 25 O O4' FMN . . . D 3 -64.286 57.111 35.406 1 15.99 ? O4' FMN 569 A 1 HETATM 26 C C5' FMN . . . D 3 -62.152 55.904 34.83 1 18.32 ? C5' FMN 569 A 1 HETATM 27 O O5' FMN . . . D 3 -61.485 57.134 34.766 1 18.69 ? O5' FMN 569 A 1 HETATM 28 P P FMN . . . D 3 -61.622 58.518 33.992 1 16.75 ? P FMN 569 A 1 HETATM 29 O O1P FMN . . . D 3 -62.847 59.264 34.457 1 17.14 ? O1P FMN 569 A 1 HETATM 30 O O2P FMN . . . D 3 -61.796 58.159 32.533 1 16.6 ? O2P FMN 569 A 1 HETATM 31 O O3P FMN . . . D 3 -60.354 59.328 34.145 1 15.99 ? O3P FMN 569 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #