data_2OZ0 # _model_server_result.job_id 6da0CPZY0rLGp2KVKAsrCA _model_server_result.datetime_utc '2024-11-19 05:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2oz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":570}' # _entry.id 2OZ0 # _exptl.entry_id 2OZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2OZ0 _cell.length_a 163.689 _cell.length_b 163.689 _cell.length_c 112.021 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 74.680667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 43 A HIS 43 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.786 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2OZ0 _atom_sites.fract_transf_matrix[1][1] 0.006109 _atom_sites.fract_transf_matrix[1][2] 0.003527 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 560 560 HEM HEM . D 3 FMN A 1 569 569 FMN FMN . E 3 FMN B 1 570 570 FMN FMN . F 4 PYR B 1 571 571 PYR PYR . G 5 HOH A 1 579 579 HOH HOH . G 5 HOH A 2 581 581 HOH HOH . G 5 HOH A 3 582 582 HOH HOH . G 5 HOH A 4 583 583 HOH HOH . G 5 HOH A 5 584 584 HOH HOH . G 5 HOH A 6 585 585 HOH HOH . G 5 HOH A 7 586 586 HOH HOH . H 5 HOH B 1 577 577 HOH HOH . H 5 HOH B 2 578 578 HOH HOH . H 5 HOH B 3 580 580 HOH HOH . H 5 HOH B 4 587 587 HOH HOH . H 5 HOH B 5 588 588 HOH HOH . H 5 HOH B 6 589 589 HOH HOH . H 5 HOH B 7 590 590 HOH HOH . H 5 HOH B 8 591 591 HOH HOH . H 5 HOH B 9 592 592 HOH HOH . H 5 HOH B 10 593 593 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 3 -40.558 68.417 5.774 1 21.55 ? N1 FMN 570 B 1 HETATM 2 C C2 FMN . . . E 3 -40.602 67.855 4.517 1 23.59 ? C2 FMN 570 B 1 HETATM 3 O O2 FMN . . . E 3 -39.983 66.809 4.216 1 24.31 ? O2 FMN 570 B 1 HETATM 4 N N3 FMN . . . E 3 -41.454 68.441 3.551 1 22.78 ? N3 FMN 570 B 1 HETATM 5 C C4 FMN . . . E 3 -42.17 69.573 3.749 1 23.84 ? C4 FMN 570 B 1 HETATM 6 O O4 FMN . . . E 3 -42.849 70.058 2.838 1 26.3 ? O4 FMN 570 B 1 HETATM 7 C C4A FMN . . . E 3 -42.135 70.149 5.13 1 21.94 ? C4A FMN 570 B 1 HETATM 8 N N5 FMN . . . E 3 -42.862 71.182 5.441 1 21.84 ? N5 FMN 570 B 1 HETATM 9 C C5A FMN . . . E 3 -42.752 71.772 6.699 1 21.35 ? C5A FMN 570 B 1 HETATM 10 C C6 FMN . . . E 3 -43.386 73.019 6.955 1 22.98 ? C6 FMN 570 B 1 HETATM 11 C C7 FMN . . . E 3 -43.267 73.653 8.178 1 23.73 ? C7 FMN 570 B 1 HETATM 12 C C7M FMN . . . E 3 -43.91 74.971 8.504 1 23.76 ? C7M FMN 570 B 1 HETATM 13 C C8 FMN . . . E 3 -42.408 73.053 9.111 1 23.42 ? C8 FMN 570 B 1 HETATM 14 C C8M FMN . . . E 3 -42.165 73.7 10.461 1 23.21 ? C8M FMN 570 B 1 HETATM 15 C C9 FMN . . . E 3 -41.748 71.849 8.843 1 21.82 ? C9 FMN 570 B 1 HETATM 16 C C9A FMN . . . E 3 -41.867 71.215 7.632 1 20.27 ? C9A FMN 570 B 1 HETATM 17 N N10 FMN . . . E 3 -41.274 70.011 7.329 1 21.76 ? N10 FMN 570 B 1 HETATM 18 C C10 FMN . . . E 3 -41.334 69.421 6.073 1 21.49 ? C10 FMN 570 B 1 HETATM 19 C C1' FMN . . . E 3 -40.357 69.312 8.239 1 20.6 ? C1' FMN 570 B 1 HETATM 20 C C2' FMN . . . E 3 -38.88 69.765 8.162 1 21.84 ? C2' FMN 570 B 1 HETATM 21 O O2' FMN . . . E 3 -38.146 69.514 6.948 1 20.31 ? O2' FMN 570 B 1 HETATM 22 C C3' FMN . . . E 3 -38.08 69.549 9.485 1 20.03 ? C3' FMN 570 B 1 HETATM 23 O O3' FMN . . . E 3 -38.086 68.115 9.586 1 18.91 ? O3' FMN 570 B 1 HETATM 24 C C4' FMN . . . E 3 -38.359 70.27 10.775 1 19.29 ? C4' FMN 570 B 1 HETATM 25 O O4' FMN . . . E 3 -38.825 71.605 10.703 1 16.59 ? O4' FMN 570 B 1 HETATM 26 C C5' FMN . . . E 3 -37.3 69.955 11.802 1 20.63 ? C5' FMN 570 B 1 HETATM 27 O O5' FMN . . . E 3 -37.669 70.691 12.955 1 19.63 ? O5' FMN 570 B 1 HETATM 28 P P FMN . . . E 3 -37.458 72.164 13.322 1 21.84 ? P FMN 570 B 1 HETATM 29 O O1P FMN . . . E 3 -37.779 72.755 14.735 1 22.63 ? O1P FMN 570 B 1 HETATM 30 O O2P FMN . . . E 3 -38.334 73.078 12.506 1 22.42 ? O2P FMN 570 B 1 HETATM 31 O O3P FMN . . . E 3 -36.071 72.778 12.974 1 24.67 ? O3P FMN 570 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #