data_2OZ9
#
_model_server_result.job_id            qrVs4Fat_ZrpVcLu_JqynQ 
_model_server_result.datetime_utc      '2025-01-10 18:46:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2oz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    2OZ9 
#
_exptl.entry_id    2OZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2OZ9 
_cell.length_a            53.3 
_cell.length_b            53.6 
_cell.length_c            33.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2OZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 59 R GLU 60 1_555 B NA NA . R NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc2 A OE1 GLU 59 R GLU 60 1_555 B NA NA . R NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc3 A N MET 65 R MET 66 1_555 B NA NA . R NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2OZ9 
_atom_sites.fract_transf_matrix[1][1]    0.018762 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018657 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.030211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA R 1 601 601 NA NA . 
C 3 SO4 R 1 602 602 SO4 SO4 . 
D 4 TRP R 1 1 1 TRP TRP . 
E 5 HOH R 1 201 201 HOH HOH . 
E 5 HOH R 2 202 202 HOH HOH . 
E 5 HOH R 3 203 203 HOH HOH . 
E 5 HOH R 4 204 204 HOH HOH . 
E 5 HOH R 5 205 205 HOH HOH . 
E 5 HOH R 6 206 206 HOH HOH . 
E 5 HOH R 7 207 207 HOH HOH . 
E 5 HOH R 8 208 208 HOH HOH . 
E 5 HOH R 9 209 209 HOH HOH . 
E 5 HOH R 10 210 210 HOH HOH . 
E 5 HOH R 11 211 211 HOH HOH . 
E 5 HOH R 12 212 212 HOH HOH . 
E 5 HOH R 13 213 213 HOH HOH . 
E 5 HOH R 14 214 214 HOH HOH . 
E 5 HOH R 15 215 215 HOH HOH . 
E 5 HOH R 16 216 216 HOH HOH . 
E 5 HOH R 17 217 217 HOH HOH . 
E 5 HOH R 18 218 218 HOH HOH . 
E 5 HOH R 19 219 219 HOH HOH . 
E 5 HOH R 20 220 220 HOH HOH . 
E 5 HOH R 21 221 221 HOH HOH . 
E 5 HOH R 22 222 222 HOH HOH . 
E 5 HOH R 23 223 223 HOH HOH . 
E 5 HOH R 24 224 224 HOH HOH . 
E 5 HOH R 25 225 225 HOH HOH . 
E 5 HOH R 26 226 226 HOH HOH . 
E 5 HOH R 27 227 227 HOH HOH . 
E 5 HOH R 28 228 228 HOH HOH . 
E 5 HOH R 29 229 229 HOH HOH . 
E 5 HOH R 30 230 230 HOH HOH . 
E 5 HOH R 31 231 231 HOH HOH . 
E 5 HOH R 32 232 232 HOH HOH . 
E 5 HOH R 33 233 233 HOH HOH . 
E 5 HOH R 34 234 234 HOH HOH . 
E 5 HOH R 35 235 235 HOH HOH . 
E 5 HOH R 36 236 236 HOH HOH . 
E 5 HOH R 37 237 237 HOH HOH . 
E 5 HOH R 38 238 238 HOH HOH . 
E 5 HOH R 39 239 239 HOH HOH . 
E 5 HOH R 40 240 240 HOH HOH . 
E 5 HOH R 41 241 241 HOH HOH . 
E 5 HOH R 42 242 242 HOH HOH . 
E 5 HOH R 43 243 243 HOH HOH . 
E 5 HOH R 44 244 244 HOH HOH . 
E 5 HOH R 45 245 245 HOH HOH . 
E 5 HOH R 46 246 246 HOH HOH . 
E 5 HOH R 47 247 247 HOH HOH . 
E 5 HOH R 48 248 248 HOH HOH . 
E 5 HOH R 49 249 249 HOH HOH . 
E 5 HOH R 50 250 250 HOH HOH . 
E 5 HOH R 51 251 251 HOH HOH . 
E 5 HOH R 52 252 252 HOH HOH . 
E 5 HOH R 53 253 253 HOH HOH . 
E 5 HOH R 54 254 254 HOH HOH . 
E 5 HOH R 55 255 255 HOH HOH . 
E 5 HOH R 56 256 256 HOH HOH . 
E 5 HOH R 57 257 257 HOH HOH . 
E 5 HOH R 58 258 258 HOH HOH . 
E 5 HOH R 59 259 259 HOH HOH . 
E 5 HOH R 60 260 260 HOH HOH . 
E 5 HOH R 61 261 261 HOH HOH . 
E 5 HOH R 62 262 262 HOH HOH . 
E 5 HOH R 63 263 263 HOH HOH . 
E 5 HOH R 64 264 264 HOH HOH . 
E 5 HOH R 65 265 265 HOH HOH . 
E 5 HOH R 66 266 266 HOH HOH . 
E 5 HOH R 67 267 267 HOH HOH . 
E 5 HOH R 68 268 268 HOH HOH . 
E 5 HOH R 69 269 269 HOH HOH . 
E 5 HOH R 70 270 270 HOH HOH . 
E 5 HOH R 71 271 271 HOH HOH . 
E 5 HOH R 72 272 272 HOH HOH . 
E 5 HOH R 73 273 273 HOH HOH . 
E 5 HOH R 74 274 274 HOH HOH . 
E 5 HOH R 75 275 275 HOH HOH . 
E 5 HOH R 76 276 276 HOH HOH . 
E 5 HOH R 77 277 277 HOH HOH . 
E 5 HOH R 78 278 278 HOH HOH . 
E 5 HOH R 79 401 401 HOH HOH . 
E 5 HOH R 80 402 402 HOH HOH . 
E 5 HOH R 81 403 403 HOH HOH . 
E 5 HOH R 82 404 404 HOH HOH . 
E 5 HOH R 83 405 405 HOH HOH . 
E 5 HOH R 84 406 406 HOH HOH . 
E 5 HOH R 85 407 407 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -20.648 
_atom_site.Cartn_y               -12.209 
_atom_site.Cartn_z               6.238 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        19.37 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           601 
_atom_site.auth_asym_id          R 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#