data_2OZO # _model_server_result.job_id wZ8yNx9S8UzjAKw39QHGGg _model_server_result.datetime_utc '2025-07-05 09:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ozo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":615}' # _entry.id 2OZO # _exptl.entry_id 2OZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 105.91 _cell.angle_beta 92.94 _cell.angle_gamma 103.72 _cell.entry_id 2OZO _cell.length_a 48.297 _cell.length_b 52.929 _cell.length_c 69.331 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 466 A ASN 466 1_555 B MG MG . A MG 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc2 A OD1 ASP 479 A ASP 479 1_555 B MG MG . A MG 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 B MG MG . A MG 614 1_555 C O2A ANP . A ANP 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc4 B MG MG . A MG 614 1_555 C O3A ANP . A ANP 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc5 B MG MG . A MG 614 1_555 C O2G ANP . A ANP 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc6 B MG MG . A MG 614 1_555 C O2B ANP . A ANP 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2OZO _atom_sites.fract_transf_matrix[1][1] 0.020705 _atom_sites.fract_transf_matrix[1][2] 0.005055 _atom_sites.fract_transf_matrix[1][3] 0.002674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019448 _atom_sites.fract_transf_matrix[2][3] 0.006006 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 614 201 MG MG . C 3 ANP A 1 615 202 ANP ANP . D 4 HOH A 1 616 101 HOH HOH . D 4 HOH A 2 617 102 HOH HOH . D 4 HOH A 3 618 103 HOH HOH . D 4 HOH A 4 619 104 HOH HOH . D 4 HOH A 5 620 105 HOH HOH . D 4 HOH A 6 621 107 HOH HOH . D 4 HOH A 7 622 108 HOH HOH . D 4 HOH A 8 623 109 HOH HOH . D 4 HOH A 9 624 110 HOH HOH . D 4 HOH A 10 625 111 HOH HOH . D 4 HOH A 11 626 112 HOH HOH . D 4 HOH A 12 627 113 HOH HOH . D 4 HOH A 13 628 114 HOH HOH . D 4 HOH A 14 629 115 HOH HOH . D 4 HOH A 15 630 117 HOH HOH . D 4 HOH A 16 631 119 HOH HOH . D 4 HOH A 17 632 2 HOH HOH . D 4 HOH A 18 633 5 HOH HOH . D 4 HOH A 19 634 6 HOH HOH . D 4 HOH A 20 635 8 HOH HOH . D 4 HOH A 21 636 9 HOH HOH . D 4 HOH A 22 637 10 HOH HOH . D 4 HOH A 23 638 12 HOH HOH . D 4 HOH A 24 639 13 HOH HOH . D 4 HOH A 25 640 14 HOH HOH . D 4 HOH A 26 641 15 HOH HOH . D 4 HOH A 27 642 16 HOH HOH . D 4 HOH A 28 643 17 HOH HOH . D 4 HOH A 29 644 18 HOH HOH . D 4 HOH A 30 645 20 HOH HOH . D 4 HOH A 31 646 21 HOH HOH . D 4 HOH A 32 647 22 HOH HOH . D 4 HOH A 33 648 23 HOH HOH . D 4 HOH A 34 649 24 HOH HOH . D 4 HOH A 35 650 26 HOH HOH . D 4 HOH A 36 651 27 HOH HOH . D 4 HOH A 37 652 28 HOH HOH . D 4 HOH A 38 653 29 HOH HOH . D 4 HOH A 39 654 32 HOH HOH . D 4 HOH A 40 655 34 HOH HOH . D 4 HOH A 41 656 36 HOH HOH . D 4 HOH A 42 657 39 HOH HOH . D 4 HOH A 43 658 42 HOH HOH . D 4 HOH A 44 659 45 HOH HOH . D 4 HOH A 45 660 50 HOH HOH . D 4 HOH A 46 661 52 HOH HOH . D 4 HOH A 47 662 55 HOH HOH . D 4 HOH A 48 663 59 HOH HOH . D 4 HOH A 49 664 61 HOH HOH . D 4 HOH A 50 665 62 HOH HOH . D 4 HOH A 51 666 63 HOH HOH . D 4 HOH A 52 667 64 HOH HOH . D 4 HOH A 53 668 65 HOH HOH . D 4 HOH A 54 669 68 HOH HOH . D 4 HOH A 55 670 69 HOH HOH . D 4 HOH A 56 671 70 HOH HOH . D 4 HOH A 57 672 72 HOH HOH . D 4 HOH A 58 673 73 HOH HOH . D 4 HOH A 59 674 75 HOH HOH . D 4 HOH A 60 675 78 HOH HOH . D 4 HOH A 61 676 79 HOH HOH . D 4 HOH A 62 677 80 HOH HOH . D 4 HOH A 63 678 81 HOH HOH . D 4 HOH A 64 679 82 HOH HOH . D 4 HOH A 65 680 83 HOH HOH . D 4 HOH A 66 681 84 HOH HOH . D 4 HOH A 67 682 87 HOH HOH . D 4 HOH A 68 683 90 HOH HOH . D 4 HOH A 69 684 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 29.161 -23.177 -8.886 1 52.47 ? PG ANP 615 A 1 HETATM 2 O O1G ANP . . . C 3 29.474 -23.681 -10.272 1 48.64 ? O1G ANP 615 A 1 HETATM 3 O O2G ANP . . . C 3 27.705 -22.883 -8.656 1 48.92 ? O2G ANP 615 A 1 HETATM 4 O O3G ANP . . . C 3 29.734 -24.022 -7.8 1 50.75 ? O3G ANP 615 A 1 HETATM 5 P PB ANP . . . C 3 29.617 -20.178 -8.811 1 41.04 ? PB ANP 615 A 1 HETATM 6 O O1B ANP . . . C 3 30.806 -19.425 -9.197 1 43.09 ? O1B ANP 615 A 1 HETATM 7 O O2B ANP . . . C 3 28.913 -19.778 -7.564 1 42.54 ? O2B ANP 615 A 1 HETATM 8 N N3B ANP . . . C 3 30.025 -21.785 -8.724 1 46.61 ? N3B ANP 615 A 1 HETATM 9 P PA ANP . . . C 3 27.71 -19.232 -10.861 1 42 ? PA ANP 615 A 1 HETATM 10 O O1A ANP . . . C 3 27.726 -19.524 -12.313 1 42.45 ? O1A ANP 615 A 1 HETATM 11 O O2A ANP . . . C 3 26.382 -19.071 -10.248 1 42.4 ? O2A ANP 615 A 1 HETATM 12 O O3A ANP . . . C 3 28.63 -20.203 -9.998 1 41.37 ? O3A ANP 615 A 1 HETATM 13 O O5' ANP . . . C 3 28.492 -17.92 -10.633 1 41.35 ? O5' ANP 615 A 1 HETATM 14 C C5' ANP . . . C 3 28.218 -17.111 -9.498 1 40.03 ? C5' ANP 615 A 1 HETATM 15 C C4' ANP . . . C 3 28.289 -15.681 -9.836 1 37.74 ? C4' ANP 615 A 1 HETATM 16 O O4' ANP . . . C 3 27.278 -15.409 -10.826 1 35.83 ? O4' ANP 615 A 1 HETATM 17 C C3' ANP . . . C 3 28.031 -14.79 -8.653 1 37.44 ? C3' ANP 615 A 1 HETATM 18 O O3' ANP . . . C 3 29.229 -14.061 -8.438 1 42.82 ? O3' ANP 615 A 1 HETATM 19 C C2' ANP . . . C 3 26.83 -13.959 -9.023 1 36.78 ? C2' ANP 615 A 1 HETATM 20 O O2' ANP . . . C 3 27.115 -12.551 -9.082 1 38.24 ? O2' ANP 615 A 1 HETATM 21 C C1' ANP . . . C 3 26.337 -14.398 -10.404 1 34.58 ? C1' ANP 615 A 1 HETATM 22 N N9 ANP . . . C 3 24.931 -14.955 -10.316 1 32.06 ? N9 ANP 615 A 1 HETATM 23 C C8 ANP . . . C 3 24.496 -16.268 -10.312 1 30.46 ? C8 ANP 615 A 1 HETATM 24 N N7 ANP . . . C 3 23.202 -16.423 -10.206 1 28.57 ? N7 ANP 615 A 1 HETATM 25 C C5 ANP . . . C 3 22.738 -15.118 -10.132 1 28.37 ? C5 ANP 615 A 1 HETATM 26 C C6 ANP . . . C 3 21.414 -14.549 -9.996 1 28.95 ? C6 ANP 615 A 1 HETATM 27 N N6 ANP . . . C 3 20.343 -15.316 -9.911 1 27.81 ? N6 ANP 615 A 1 HETATM 28 N N1 ANP . . . C 3 21.289 -13.185 -9.951 1 30.17 ? N1 ANP 615 A 1 HETATM 29 C C2 ANP . . . C 3 22.386 -12.418 -10.034 1 29.89 ? C2 ANP 615 A 1 HETATM 30 N N3 ANP . . . C 3 23.669 -12.824 -10.156 1 29.21 ? N3 ANP 615 A 1 HETATM 31 C C4 ANP . . . C 3 23.776 -14.212 -10.202 1 29.56 ? C4 ANP 615 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #