data_2P0D # _model_server_result.job_id kHBvEAjDVBdXb4Ho7qmqMw _model_server_result.datetime_utc '2024-11-24 05:50:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 2P0D # _exptl.entry_id 2P0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.096 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P0D _cell.length_a 41.51 _cell.length_b 95.11 _cell.length_c 29.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 O15 P3' _chem_comp.formula_weight 420.096 _chem_comp.id I3P _chem_comp.mon_nstd_flag . _chem_comp.name D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 I3P sing 139 n n C1 C6 I3P sing 140 n n C1 O1 I3P sing 141 n n C1 H1 I3P sing 142 n n C2 C3 I3P sing 143 n n C2 O2 I3P sing 144 n n C2 H2 I3P sing 145 n n C3 C4 I3P sing 146 n n C3 O3 I3P sing 147 n n C3 H3 I3P sing 148 n n C4 C5 I3P sing 149 n n C4 O4 I3P sing 150 n n C4 H4 I3P sing 151 n n C5 C6 I3P sing 152 n n C5 O5 I3P sing 153 n n C5 H5 I3P sing 154 n n C6 O6 I3P sing 155 n n C6 H6 I3P sing 156 n n O1 P1 I3P sing 157 n n O2 HO2 I3P sing 158 n n O3 HO3 I3P sing 159 n n O4 P4 I3P sing 160 n n O5 P5 I3P sing 161 n n O6 HO6 I3P sing 162 n n P1 O11 I3P doub 163 n n P1 O12 I3P sing 164 n n P1 O13 I3P sing 165 n n O12 HO12 I3P sing 166 n n O13 HO13 I3P sing 167 n n P4 O41 I3P doub 168 n n P4 O42 I3P sing 169 n n P4 O43 I3P sing 170 n n O42 HO42 I3P sing 171 n n O43 HO43 I3P sing 172 n n P5 O51 I3P doub 173 n n P5 O52 I3P sing 174 n n P5 O53 I3P sing 175 n n O52 HO52 I3P sing 176 n n O53 HO53 I3P sing 177 n n # _atom_sites.entry_id 2P0D _atom_sites.fract_transf_matrix[1][1] 0.024091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I3P A 1 800 800 I3P I3P . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I3P . . . B 2 -9.073 -16.655 -0.578 1 14.25 ? C1 I3P 800 A 1 HETATM 2 C C2 I3P . . . B 2 -8.713 -16.634 -2.04 1 14.97 ? C2 I3P 800 A 1 HETATM 3 C C3 I3P . . . B 2 -7.213 -16.826 -2.207 1 12.66 ? C3 I3P 800 A 1 HETATM 4 C C4 I3P . . . B 2 -6.807 -18.164 -1.516 1 12.87 ? C4 I3P 800 A 1 HETATM 5 C C5 I3P . . . B 2 -7.231 -18.205 -0.053 1 11.94 ? C5 I3P 800 A 1 HETATM 6 C C6 I3P . . . B 2 -8.753 -17.99 0.13 1 11.59 ? C6 I3P 800 A 1 HETATM 7 O O1 I3P . . . B 2 -10.451 -16.327 -0.567 1 20.19 ? O1 I3P 800 A 1 HETATM 8 O O2 I3P . . . B 2 -9.458 -17.661 -2.734 1 15.81 ? O2 I3P 800 A 1 HETATM 9 O O3 I3P . . . B 2 -6.917 -16.939 -3.607 1 16.74 ? O3 I3P 800 A 1 HETATM 10 O O4 I3P . . . B 2 -5.361 -18.337 -1.624 1 13.36 ? O4 I3P 800 A 1 HETATM 11 O O5 I3P . . . B 2 -6.864 -19.435 0.549 1 12.13 ? O5 I3P 800 A 1 HETATM 12 O O6 I3P . . . B 2 -8.978 -17.755 1.509 1 13.58 ? O6 I3P 800 A 1 HETATM 13 P P1 I3P . . . B 2 -10.95 -14.855 -0.15 1 20.59 ? P1 I3P 800 A 1 HETATM 14 O O11 I3P . . . B 2 -10.41 -14.433 1.16 1 17.92 ? O11 I3P 800 A 1 HETATM 15 O O12 I3P . . . B 2 -12.477 -15.082 0.003 1 21.66 ? O12 I3P 800 A 1 HETATM 16 O O13 I3P . . . B 2 -10.615 -14.091 -1.403 1 20.03 ? O13 I3P 800 A 1 HETATM 17 P P4 I3P . . . B 2 -4.601 -19.152 -2.768 1 13.31 ? P4 I3P 800 A 1 HETATM 18 O O41 I3P . . . B 2 -4.883 -20.617 -2.671 1 11.75 ? O41 I3P 800 A 1 HETATM 19 O O42 I3P . . . B 2 -5.041 -18.63 -4.103 1 15.05 ? O42 I3P 800 A 1 HETATM 20 O O43 I3P . . . B 2 -3.161 -18.81 -2.45 1 13.8 ? O43 I3P 800 A 1 HETATM 21 P P5 I3P . . . B 2 -6.213 -19.569 2.003 1 15.44 ? P5 I3P 800 A 1 HETATM 22 O O51 I3P . . . B 2 -6.19 -21.069 2.161 1 16.64 ? O51 I3P 800 A 1 HETATM 23 O O52 I3P . . . B 2 -7.092 -18.859 2.983 1 20.24 ? O52 I3P 800 A 1 HETATM 24 O O53 I3P . . . B 2 -4.866 -18.9 1.917 1 14.78 ? O53 I3P 800 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #