data_2P11
#
_model_server_result.job_id            vDr-7p86kGVwVA2BYYQWDw 
_model_server_result.datetime_utc      '2024-11-13 14:11:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p11 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":232}' 
#
_entry.id    2P11 
#
_exptl.entry_id    2P11 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.22 
_cell.angle_gamma         90 
_cell.entry_id            2P11 
_cell.length_a            80.39 
_cell.length_b            68.08 
_cell.length_c            88.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P11 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 35 A HIS 34 1_555 A N MSE 36 A MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C MSE 36 A MSE 35 1_555 A N MSE 37 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale3 A C MSE 37 A MSE 36 1_555 A N ARG 38 A ARG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C LEU 83 A LEU 82 1_555 A N MSE 84 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C MSE 84 A MSE 83 1_555 A N SER 85 A SER 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C LEU 150 A LEU 149 1_555 A N MSE 151 A MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale7 A C MSE 151 A MSE 150 1_555 A N LEU 152 A LEU 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale8 A C VAL 155 A VAL 154 1_555 A N MSE 156 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C MSE 156 A MSE 155 1_555 A N GLU 157 A GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 A C VAL 165 A VAL 164 1_555 A N MSE 166 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale11 A C MSE 166 A MSE 165 1_555 A N VAL 167 A VAL 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale12 A C ALA 176 A ALA 175 1_555 A N MSE 177 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 A C MSE 177 A MSE 176 1_555 A N LYS 178 A LYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 A C GLU 220 A GLU 219 1_555 A N MSE 221 A MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale15 A C MSE 221 A MSE 220 1_555 A N ASP 222 A ASP 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale16 B C HIS 35 B HIS 34 1_555 B N MSE 36 B MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale17 B C MSE 36 B MSE 35 1_555 B N MSE 37 B MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale18 B C MSE 37 B MSE 36 1_555 B N ARG 38 B ARG 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale19 B C LEU 83 B LEU 82 1_555 B N MSE 84 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale20 B C MSE 84 B MSE 83 1_555 B N SER 85 B SER 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale21 B C LEU 150 B LEU 149 1_555 B N MSE 151 B MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale22 B C MSE 151 B MSE 150 1_555 B N LEU 152 B LEU 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale23 B C VAL 155 B VAL 154 1_555 B N MSE 156 B MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale24 B C MSE 156 B MSE 155 1_555 B N GLU 157 B GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale25 B C VAL 165 B VAL 164 1_555 B N MSE 166 B MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale26 B C MSE 166 B MSE 165 1_555 B N VAL 167 B VAL 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale27 B C ALA 176 B ALA 175 1_555 B N MSE 177 B MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale28 B C MSE 177 B MSE 176 1_555 B N LYS 178 B LYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale29 B C GLU 220 B GLU 219 1_555 B N MSE 221 B MSE 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale30 B C MSE 221 B MSE 220 1_555 B N ASP 222 B ASP 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2P11 
_atom_sites.fract_transf_matrix[1][1]    0.01244 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00508 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01469 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01224 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CL A 1 231 1 CL CL . 
D 3 GOL A 1 232 5 GOL GOL . 
E 3 GOL A 1 233 6 GOL GOL . 
F 3 GOL A 1 234 7 GOL GOL . 
G 2 CL B 1 231 2 CL CL . 
H 3 GOL B 1 232 3 GOL GOL . 
I 3 GOL B 1 233 4 GOL GOL . 
J 4 HOH A 1 235 9 HOH HOH . 
J 4 HOH A 2 236 10 HOH HOH . 
J 4 HOH A 3 237 15 HOH HOH . 
J 4 HOH A 4 238 22 HOH HOH . 
J 4 HOH A 5 239 23 HOH HOH . 
J 4 HOH A 6 240 24 HOH HOH . 
J 4 HOH A 7 241 26 HOH HOH . 
J 4 HOH A 8 242 27 HOH HOH . 
J 4 HOH A 9 243 32 HOH HOH . 
J 4 HOH A 10 244 34 HOH HOH . 
J 4 HOH A 11 245 35 HOH HOH . 
J 4 HOH A 12 246 38 HOH HOH . 
J 4 HOH A 13 247 39 HOH HOH . 
J 4 HOH A 14 248 42 HOH HOH . 
J 4 HOH A 15 249 45 HOH HOH . 
J 4 HOH A 16 250 46 HOH HOH . 
J 4 HOH A 17 251 49 HOH HOH . 
J 4 HOH A 18 252 50 HOH HOH . 
J 4 HOH A 19 253 51 HOH HOH . 
J 4 HOH A 20 254 54 HOH HOH . 
J 4 HOH A 21 255 58 HOH HOH . 
J 4 HOH A 22 256 59 HOH HOH . 
J 4 HOH A 23 257 62 HOH HOH . 
J 4 HOH A 24 258 63 HOH HOH . 
J 4 HOH A 25 259 64 HOH HOH . 
J 4 HOH A 26 260 66 HOH HOH . 
J 4 HOH A 27 261 67 HOH HOH . 
J 4 HOH A 28 262 70 HOH HOH . 
J 4 HOH A 29 263 71 HOH HOH . 
J 4 HOH A 30 264 72 HOH HOH . 
J 4 HOH A 31 265 74 HOH HOH . 
J 4 HOH A 32 266 76 HOH HOH . 
J 4 HOH A 33 267 79 HOH HOH . 
J 4 HOH A 34 268 81 HOH HOH . 
J 4 HOH A 35 269 84 HOH HOH . 
J 4 HOH A 36 270 87 HOH HOH . 
J 4 HOH A 37 271 88 HOH HOH . 
J 4 HOH A 38 272 89 HOH HOH . 
J 4 HOH A 39 273 91 HOH HOH . 
J 4 HOH A 40 274 92 HOH HOH . 
J 4 HOH A 41 275 94 HOH HOH . 
J 4 HOH A 42 276 97 HOH HOH . 
J 4 HOH A 43 277 99 HOH HOH . 
J 4 HOH A 44 278 100 HOH HOH . 
J 4 HOH A 45 279 102 HOH HOH . 
J 4 HOH A 46 280 104 HOH HOH . 
J 4 HOH A 47 281 105 HOH HOH . 
J 4 HOH A 48 282 106 HOH HOH . 
J 4 HOH A 49 283 107 HOH HOH . 
J 4 HOH A 50 284 108 HOH HOH . 
J 4 HOH A 51 285 110 HOH HOH . 
J 4 HOH A 52 286 111 HOH HOH . 
K 4 HOH B 1 234 8 HOH HOH . 
K 4 HOH B 2 235 11 HOH HOH . 
K 4 HOH B 3 236 12 HOH HOH . 
K 4 HOH B 4 237 13 HOH HOH . 
K 4 HOH B 5 238 14 HOH HOH . 
K 4 HOH B 6 239 16 HOH HOH . 
K 4 HOH B 7 240 17 HOH HOH . 
K 4 HOH B 8 241 18 HOH HOH . 
K 4 HOH B 9 242 19 HOH HOH . 
K 4 HOH B 10 243 20 HOH HOH . 
K 4 HOH B 11 244 21 HOH HOH . 
K 4 HOH B 12 245 25 HOH HOH . 
K 4 HOH B 13 246 28 HOH HOH . 
K 4 HOH B 14 247 29 HOH HOH . 
K 4 HOH B 15 248 30 HOH HOH . 
K 4 HOH B 16 249 31 HOH HOH . 
K 4 HOH B 17 250 33 HOH HOH . 
K 4 HOH B 18 251 36 HOH HOH . 
K 4 HOH B 19 252 37 HOH HOH . 
K 4 HOH B 20 253 40 HOH HOH . 
K 4 HOH B 21 254 41 HOH HOH . 
K 4 HOH B 22 255 43 HOH HOH . 
K 4 HOH B 23 256 44 HOH HOH . 
K 4 HOH B 24 257 47 HOH HOH . 
K 4 HOH B 25 258 48 HOH HOH . 
K 4 HOH B 26 259 52 HOH HOH . 
K 4 HOH B 27 260 53 HOH HOH . 
K 4 HOH B 28 261 55 HOH HOH . 
K 4 HOH B 29 262 56 HOH HOH . 
K 4 HOH B 30 263 57 HOH HOH . 
K 4 HOH B 31 264 60 HOH HOH . 
K 4 HOH B 32 265 61 HOH HOH . 
K 4 HOH B 33 266 65 HOH HOH . 
K 4 HOH B 34 267 68 HOH HOH . 
K 4 HOH B 35 268 69 HOH HOH . 
K 4 HOH B 36 269 73 HOH HOH . 
K 4 HOH B 37 270 75 HOH HOH . 
K 4 HOH B 38 271 77 HOH HOH . 
K 4 HOH B 39 272 78 HOH HOH . 
K 4 HOH B 40 273 80 HOH HOH . 
K 4 HOH B 41 274 82 HOH HOH . 
K 4 HOH B 42 275 83 HOH HOH . 
K 4 HOH B 43 276 85 HOH HOH . 
K 4 HOH B 44 277 86 HOH HOH . 
K 4 HOH B 45 278 90 HOH HOH . 
K 4 HOH B 46 279 93 HOH HOH . 
K 4 HOH B 47 280 95 HOH HOH . 
K 4 HOH B 48 281 96 HOH HOH . 
K 4 HOH B 49 282 98 HOH HOH . 
K 4 HOH B 50 283 101 HOH HOH . 
K 4 HOH B 51 284 103 HOH HOH . 
K 4 HOH B 52 285 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 39.996 23.888 22.517 1 31.61 ? C1 GOL 232 A 1 
HETATM 2 O O1 GOL . . . D 3 39.555 24.43 23.735 1 24.3 ? O1 GOL 232 A 1 
HETATM 3 C C2 GOL . . . D 3 41.379 23.28 22.736 1 31.16 ? C2 GOL 232 A 1 
HETATM 4 O O2 GOL . . . D 3 42.224 23.603 21.654 1 37.69 ? O2 GOL 232 A 1 
HETATM 5 C C3 GOL . . . D 3 41.274 21.769 22.851 1 26.95 ? C3 GOL 232 A 1 
HETATM 6 O O3 GOL . . . D 3 41.33 21.388 24.205 1 22.56 ? O3 GOL 232 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#