data_2P16 # _model_server_result.job_id UEHsFBOZZ2SqwLM_hf6Q5g _model_server_result.datetime_utc '2024-11-28 00:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":298}' # _entry.id 2P16 # _exptl.entry_id 2P16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.497 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-METHOXYPHENYL)-7-OXO-6-[4-(2-OXOPIPERIDIN-1-YL)PHENYL]-4,5,6,7-TETRAHYDRO-1H-PYRAZOLO[3,4-C]PYRIDINE-3-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P16 _cell.length_a 56.4 _cell.length_b 72.8 _cell.length_c 79.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? disulf ? disulf6 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? disulf ? disulf7 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? disulf ? disulf8 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'C25 H25 N5 O4' _chem_comp.formula_weight 459.497 _chem_comp.id GG2 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-METHOXYPHENYL)-7-OXO-6-[4-(2-OXOPIPERIDIN-1-YL)PHENYL]-4,5,6,7-TETRAHYDRO-1H-PYRAZOLO[3,4-C]PYRIDINE-3-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GG2 sing 83 n y C1 O4 GG2 sing 84 n n C1 C6 GG2 doub 85 n y C2 C3 GG2 doub 86 n y C2 H2 GG2 sing 87 n n C3 C4 GG2 sing 88 n y C3 H3 GG2 sing 89 n n O4 C15 GG2 sing 90 n n N6 N1 GG2 sing 91 n n N6 C10 GG2 doub 92 n n C7 C44 GG2 doub 93 n y C7 C22 GG2 sing 94 n y C7 N5 GG2 sing 95 n n C8 N5 GG2 sing 96 n n C8 O3 GG2 doub 97 n n C8 C13 GG2 sing 98 n n C10 C12 GG2 sing 99 n n C10 C11 GG2 sing 100 n n C11 O1 GG2 doub 101 n n C11 N3 GG2 sing 102 n n C12 C17 GG2 sing 103 n n C12 C13 GG2 doub 104 n n C13 N1 GG2 sing 105 n n C14 C16 GG2 doub 106 n y C14 C44 GG2 sing 107 n y C14 H14 GG2 sing 108 n n C15 H151 GG2 sing 109 n n C15 H152 GG2 sing 110 n n C15 H153 GG2 sing 111 n n C16 N2 GG2 sing 112 n n C16 C18 GG2 sing 113 n y C19 C23 GG2 sing 114 n n C19 O2 GG2 doub 115 n n C19 N2 GG2 sing 116 n n C20 C21 GG2 sing 117 n n C20 N2 GG2 sing 118 n n C20 H201 GG2 sing 119 n n C20 H202 GG2 sing 120 n n C21 C25 GG2 sing 121 n n C21 H211 GG2 sing 122 n n C21 H212 GG2 sing 123 n n C22 C18 GG2 doub 124 n y C22 H22 GG2 sing 125 n n C24 N5 GG2 sing 126 n n C24 C17 GG2 sing 127 n n C24 H241 GG2 sing 128 n n C24 H242 GG2 sing 129 n n C4 N1 GG2 sing 130 n n C4 C5 GG2 doub 131 n y C5 C6 GG2 sing 132 n y C5 H5 GG2 sing 133 n n C6 H6 GG2 sing 134 n n C44 H44 GG2 sing 135 n n C18 H18 GG2 sing 136 n n C25 C23 GG2 sing 137 n n C25 H251 GG2 sing 138 n n C25 H252 GG2 sing 139 n n C23 H231 GG2 sing 140 n n C23 H232 GG2 sing 141 n n N3 HN31 GG2 sing 142 n n N3 HN32 GG2 sing 143 n n C17 H171 GG2 sing 144 n n C17 H172 GG2 sing 145 n n # _atom_sites.entry_id 2P16 _atom_sites.fract_transf_matrix[1][1] 0.01773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 GG2 A 1 298 298 GG2 GG2 . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 2 HOH HOH . E 5 HOH A 3 304 3 HOH HOH . E 5 HOH A 4 305 4 HOH HOH . E 5 HOH A 5 306 5 HOH HOH . E 5 HOH A 6 307 9 HOH HOH . E 5 HOH A 7 308 10 HOH HOH . E 5 HOH A 8 309 12 HOH HOH . E 5 HOH A 9 310 13 HOH HOH . E 5 HOH A 10 311 14 HOH HOH . E 5 HOH A 11 312 15 HOH HOH . E 5 HOH A 12 313 16 HOH HOH . E 5 HOH A 13 314 18 HOH HOH . E 5 HOH A 14 315 19 HOH HOH . E 5 HOH A 15 316 20 HOH HOH . E 5 HOH A 16 317 21 HOH HOH . E 5 HOH A 17 318 22 HOH HOH . E 5 HOH A 18 319 23 HOH HOH . E 5 HOH A 19 320 24 HOH HOH . E 5 HOH A 20 321 26 HOH HOH . E 5 HOH A 21 322 28 HOH HOH . E 5 HOH A 22 323 29 HOH HOH . E 5 HOH A 23 324 30 HOH HOH . E 5 HOH A 24 325 32 HOH HOH . E 5 HOH A 25 326 35 HOH HOH . E 5 HOH A 26 327 36 HOH HOH . E 5 HOH A 27 328 37 HOH HOH . E 5 HOH A 28 329 38 HOH HOH . E 5 HOH A 29 330 40 HOH HOH . E 5 HOH A 30 331 41 HOH HOH . E 5 HOH A 31 332 42 HOH HOH . E 5 HOH A 32 333 44 HOH HOH . E 5 HOH A 33 334 46 HOH HOH . E 5 HOH A 34 335 47 HOH HOH . E 5 HOH A 35 336 48 HOH HOH . E 5 HOH A 36 337 49 HOH HOH . E 5 HOH A 37 338 50 HOH HOH . E 5 HOH A 38 339 51 HOH HOH . E 5 HOH A 39 340 52 HOH HOH . E 5 HOH A 40 341 54 HOH HOH . E 5 HOH A 41 342 55 HOH HOH . E 5 HOH A 42 343 56 HOH HOH . E 5 HOH A 43 344 57 HOH HOH . E 5 HOH A 44 345 58 HOH HOH . E 5 HOH A 45 346 59 HOH HOH . E 5 HOH A 46 347 61 HOH HOH . E 5 HOH A 47 348 62 HOH HOH . E 5 HOH A 48 349 65 HOH HOH . E 5 HOH A 49 350 66 HOH HOH . E 5 HOH A 50 351 67 HOH HOH . E 5 HOH A 51 352 68 HOH HOH . E 5 HOH A 52 353 69 HOH HOH . E 5 HOH A 53 354 70 HOH HOH . E 5 HOH A 54 355 71 HOH HOH . E 5 HOH A 55 356 72 HOH HOH . E 5 HOH A 56 357 73 HOH HOH . E 5 HOH A 57 358 74 HOH HOH . E 5 HOH A 58 359 75 HOH HOH . E 5 HOH A 59 360 76 HOH HOH . E 5 HOH A 60 361 77 HOH HOH . E 5 HOH A 61 362 78 HOH HOH . E 5 HOH A 62 363 79 HOH HOH . E 5 HOH A 63 364 80 HOH HOH . E 5 HOH A 64 365 81 HOH HOH . E 5 HOH A 65 366 83 HOH HOH . E 5 HOH A 66 367 84 HOH HOH . E 5 HOH A 67 368 85 HOH HOH . E 5 HOH A 68 369 88 HOH HOH . E 5 HOH A 69 370 89 HOH HOH . E 5 HOH A 70 371 90 HOH HOH . E 5 HOH A 71 372 91 HOH HOH . E 5 HOH A 72 373 92 HOH HOH . E 5 HOH A 73 374 93 HOH HOH . E 5 HOH A 74 375 95 HOH HOH . E 5 HOH A 75 376 96 HOH HOH . E 5 HOH A 76 377 97 HOH HOH . E 5 HOH A 77 378 98 HOH HOH . E 5 HOH A 78 379 99 HOH HOH . E 5 HOH A 79 380 100 HOH HOH . E 5 HOH A 80 381 101 HOH HOH . E 5 HOH A 81 382 102 HOH HOH . E 5 HOH A 82 383 103 HOH HOH . E 5 HOH A 83 384 105 HOH HOH . E 5 HOH A 84 385 106 HOH HOH . E 5 HOH A 85 386 107 HOH HOH . E 5 HOH A 86 387 109 HOH HOH . E 5 HOH A 87 388 111 HOH HOH . E 5 HOH A 88 389 112 HOH HOH . E 5 HOH A 89 390 113 HOH HOH . E 5 HOH A 90 391 114 HOH HOH . E 5 HOH A 91 392 115 HOH HOH . E 5 HOH A 92 393 117 HOH HOH . E 5 HOH A 93 394 118 HOH HOH . E 5 HOH A 94 395 119 HOH HOH . E 5 HOH A 95 396 120 HOH HOH . F 5 HOH L 1 139 6 HOH HOH . F 5 HOH L 2 140 7 HOH HOH . F 5 HOH L 3 141 8 HOH HOH . F 5 HOH L 4 142 11 HOH HOH . F 5 HOH L 5 143 17 HOH HOH . F 5 HOH L 6 144 25 HOH HOH . F 5 HOH L 7 145 27 HOH HOH . F 5 HOH L 8 146 31 HOH HOH . F 5 HOH L 9 147 33 HOH HOH . F 5 HOH L 10 148 34 HOH HOH . F 5 HOH L 11 149 39 HOH HOH . F 5 HOH L 12 150 43 HOH HOH . F 5 HOH L 13 151 45 HOH HOH . F 5 HOH L 14 152 53 HOH HOH . F 5 HOH L 15 153 60 HOH HOH . F 5 HOH L 16 154 63 HOH HOH . F 5 HOH L 17 155 64 HOH HOH . F 5 HOH L 18 156 82 HOH HOH . F 5 HOH L 19 157 86 HOH HOH . F 5 HOH L 20 158 87 HOH HOH . F 5 HOH L 21 159 94 HOH HOH . F 5 HOH L 22 160 104 HOH HOH . F 5 HOH L 23 161 108 HOH HOH . F 5 HOH L 24 162 110 HOH HOH . F 5 HOH L 25 163 116 HOH HOH . F 5 HOH L 26 164 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GG2 . . . D 4 10.979 45.496 65.652 1 31.37 ? C1 GG2 298 A 1 HETATM 2 C C2 GG2 . . . D 4 10.581 46.554 64.716 1 31.36 ? C2 GG2 298 A 1 HETATM 3 C C3 GG2 . . . D 4 9.19 46.614 64.244 1 33.1 ? C3 GG2 298 A 1 HETATM 4 O O4 GG2 . . . D 4 12.327 45.498 66.028 1 31.94 ? O4 GG2 298 A 1 HETATM 5 N N6 GG2 . . . D 4 5.888 46.333 64.933 1 37.52 ? N6 GG2 298 A 1 HETATM 6 C C7 GG2 . . . D 4 6.378 42.357 60.606 1 38.88 ? C7 GG2 298 A 1 HETATM 7 C C8 GG2 . . . D 4 6.817 44.086 62.265 1 39.27 ? C8 GG2 298 A 1 HETATM 8 C C10 GG2 . . . D 4 4.691 46.116 64.363 1 39.83 ? C10 GG2 298 A 1 HETATM 9 C C11 GG2 . . . D 4 3.455 46.605 64.815 1 40.56 ? C11 GG2 298 A 1 HETATM 10 C C12 GG2 . . . D 4 4.943 45.249 63.299 1 39.27 ? C12 GG2 298 A 1 HETATM 11 C C13 GG2 . . . D 4 6.295 44.953 63.239 1 38.45 ? C13 GG2 298 A 1 HETATM 12 C C14 GG2 . . . D 4 7.689 41.873 58.523 1 38.81 ? C14 GG2 298 A 1 HETATM 13 C C15 GG2 . . . D 4 12.924 44.517 66.876 1 31.12 ? C15 GG2 298 A 1 HETATM 14 C C16 GG2 . . . D 4 7.447 40.452 58.792 1 39.72 ? C16 GG2 298 A 1 HETATM 15 C C19 GG2 . . . D 4 7.161 39.042 56.935 1 43.17 ? C19 GG2 298 A 1 HETATM 16 C C20 GG2 . . . D 4 9.375 39.108 58.089 1 41.95 ? C20 GG2 298 A 1 HETATM 17 C C21 GG2 . . . D 4 9.764 37.851 57.331 1 42.04 ? C21 GG2 298 A 1 HETATM 18 C C22 GG2 . . . D 4 6.134 40.93 60.86 1 38.09 ? C22 GG2 298 A 1 HETATM 19 C C24 GG2 . . . D 4 4.486 43.296 61.923 1 39.64 ? C24 GG2 298 A 1 HETATM 20 C C4 GG2 . . . D 4 8.22 45.612 64.725 1 34.82 ? C4 GG2 298 A 1 HETATM 21 C C5 GG2 . . . D 4 8.623 44.564 65.671 1 34.68 ? C5 GG2 298 A 1 HETATM 22 C C6 GG2 . . . D 4 10.005 44.503 66.137 1 33.97 ? C6 GG2 298 A 1 HETATM 23 N N1 GG2 . . . D 4 6.879 45.636 64.278 1 37.33 ? N1 GG2 298 A 1 HETATM 24 N N5 GG2 . . . D 4 5.927 43.276 61.557 1 39.57 ? N5 GG2 298 A 1 HETATM 25 C C44 GG2 . . . D 4 7.129 42.842 59.438 1 38.45 ? C44 GG2 298 A 1 HETATM 26 N N2 GG2 . . . D 4 7.959 39.518 57.931 1 41.76 ? N2 GG2 298 A 1 HETATM 27 C C18 GG2 . . . D 4 6.67 39.96 59.932 1 39.43 ? C18 GG2 298 A 1 HETATM 28 O O3 GG2 . . . D 4 8.034 44.07 62.079 1 40.09 ? O3 GG2 298 A 1 HETATM 29 C C25 GG2 . . . D 4 9.235 37.991 55.92 1 42.63 ? C25 GG2 298 A 1 HETATM 30 O O2 GG2 . . . D 4 5.995 39.404 56.782 1 46.8 ? O2 GG2 298 A 1 HETATM 31 C C23 GG2 . . . D 4 7.714 37.991 55.989 1 43.05 ? C23 GG2 298 A 1 HETATM 32 O O1 GG2 . . . D 4 2.461 46.668 64.087 1 40.91 ? O1 GG2 298 A 1 HETATM 33 N N3 GG2 . . . D 4 3.44 46.969 66.114 1 40.12 ? N3 GG2 298 A 1 HETATM 34 C C17 GG2 . . . D 4 3.961 44.675 62.317 1 39.29 ? C17 GG2 298 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #