data_2P2F # _model_server_result.job_id w-mPrCVI7QK2Vk3rqWp-VQ _model_server_result.datetime_utc '2024-11-25 04:57:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p2f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":999}' # _entry.id 2P2F # _exptl.entry_id 2P2F _exptl.method 'X-RAY DIFFRACTION' # _entity.details 'Sigma, C-4780' _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P2F _cell.length_a 90.906 _cell.length_b 94.933 _cell.length_c 161.814 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P2F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id ACT _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ACT _struct_conn.ptnr1_auth_seq_id 653 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O3P _struct_conn.ptnr2_label_comp_id AMP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AMP _struct_conn.ptnr2_auth_seq_id 999 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.916 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 19 n n P O2P AMP sing 20 n n P O3P AMP sing 21 n n P O5' AMP sing 22 n n O2P HOP2 AMP sing 23 n n O3P HOP3 AMP sing 24 n n O5' C5' AMP sing 25 n n C5' C4' AMP sing 26 n n C5' "H5'1" AMP sing 27 n n C5' "H5'2" AMP sing 28 n n C4' O4' AMP sing 29 n n C4' C3' AMP sing 30 n n C4' H4' AMP sing 31 n n O4' C1' AMP sing 32 n n C3' O3' AMP sing 33 n n C3' C2' AMP sing 34 n n C3' H3' AMP sing 35 n n O3' HO3' AMP sing 36 n n C2' O2' AMP sing 37 n n C2' C1' AMP sing 38 n n C2' H2' AMP sing 39 n n O2' HO2' AMP sing 40 n n C1' N9 AMP sing 41 n n C1' H1' AMP sing 42 n n N9 C8 AMP sing 43 n y N9 C4 AMP sing 44 n y C8 N7 AMP doub 45 n y C8 H8 AMP sing 46 n n N7 C5 AMP sing 47 n y C5 C6 AMP sing 48 n y C5 C4 AMP doub 49 n y C6 N6 AMP sing 50 n n C6 N1 AMP doub 51 n y N6 HN61 AMP sing 52 n n N6 HN62 AMP sing 53 n n N1 C2 AMP sing 54 n y C2 N3 AMP doub 55 n y C2 H2 AMP sing 56 n n N3 C4 AMP sing 57 n y # _atom_sites.entry_id 2P2F _atom_sites.fract_transf_matrix[1][1] 0.011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 653 201 ACT ACT . D 3 COA A 1 990 990 COA COA . E 4 AMP A 1 999 999 AMP AMP . F 2 ACT B 1 653 202 ACT ACT . G 3 COA B 1 991 991 COA COA . H 4 AMP B 1 998 998 AMP AMP . I 5 HOH A 1 1000 1 HOH HOH . I 5 HOH A 2 1001 2 HOH HOH . I 5 HOH A 3 1002 3 HOH HOH . I 5 HOH A 4 1003 4 HOH HOH . I 5 HOH A 5 1004 5 HOH HOH . I 5 HOH A 6 1005 6 HOH HOH . I 5 HOH A 7 1006 7 HOH HOH . I 5 HOH A 8 1007 8 HOH HOH . I 5 HOH A 9 1008 9 HOH HOH . I 5 HOH A 10 1009 10 HOH HOH . I 5 HOH A 11 1010 11 HOH HOH . I 5 HOH A 12 1011 12 HOH HOH . I 5 HOH A 13 1012 13 HOH HOH . I 5 HOH A 14 1013 14 HOH HOH . I 5 HOH A 15 1014 15 HOH HOH . I 5 HOH A 16 1015 16 HOH HOH . I 5 HOH A 17 1016 17 HOH HOH . I 5 HOH A 18 1017 18 HOH HOH . I 5 HOH A 19 1018 19 HOH HOH . I 5 HOH A 20 1019 20 HOH HOH . I 5 HOH A 21 1020 21 HOH HOH . I 5 HOH A 22 1021 22 HOH HOH . I 5 HOH A 23 1022 23 HOH HOH . I 5 HOH A 24 1023 24 HOH HOH . I 5 HOH A 25 1024 25 HOH HOH . I 5 HOH A 26 1025 26 HOH HOH . I 5 HOH A 27 1026 27 HOH HOH . I 5 HOH A 28 1027 28 HOH HOH . I 5 HOH A 29 1028 29 HOH HOH . I 5 HOH A 30 1029 30 HOH HOH . I 5 HOH A 31 1030 31 HOH HOH . I 5 HOH A 32 1031 32 HOH HOH . I 5 HOH A 33 1032 33 HOH HOH . I 5 HOH A 34 1033 34 HOH HOH . I 5 HOH A 35 1034 35 HOH HOH . I 5 HOH A 36 1035 36 HOH HOH . I 5 HOH A 37 1036 37 HOH HOH . I 5 HOH A 38 1037 38 HOH HOH . I 5 HOH A 39 1038 39 HOH HOH . I 5 HOH A 40 1039 40 HOH HOH . I 5 HOH A 41 1040 41 HOH HOH . I 5 HOH A 42 1041 42 HOH HOH . I 5 HOH A 43 1042 70 HOH HOH . I 5 HOH A 44 1043 74 HOH HOH . I 5 HOH A 45 1044 89 HOH HOH . I 5 HOH A 46 1045 90 HOH HOH . I 5 HOH A 47 1046 91 HOH HOH . I 5 HOH A 48 1047 92 HOH HOH . I 5 HOH A 49 1048 93 HOH HOH . I 5 HOH A 50 1049 95 HOH HOH . I 5 HOH A 51 1050 96 HOH HOH . I 5 HOH A 52 1051 97 HOH HOH . I 5 HOH A 53 1052 98 HOH HOH . I 5 HOH A 54 1053 99 HOH HOH . I 5 HOH A 55 1054 100 HOH HOH . I 5 HOH A 56 1055 101 HOH HOH . I 5 HOH A 57 1056 102 HOH HOH . I 5 HOH A 58 1057 103 HOH HOH . I 5 HOH A 59 1058 104 HOH HOH . I 5 HOH A 60 1059 105 HOH HOH . I 5 HOH A 61 1060 106 HOH HOH . I 5 HOH A 62 1061 107 HOH HOH . I 5 HOH A 63 1062 108 HOH HOH . I 5 HOH A 64 1063 109 HOH HOH . I 5 HOH A 65 1064 110 HOH HOH . I 5 HOH A 66 1065 111 HOH HOH . I 5 HOH A 67 1066 112 HOH HOH . I 5 HOH A 68 1067 113 HOH HOH . I 5 HOH A 69 1068 114 HOH HOH . I 5 HOH A 70 1069 119 HOH HOH . I 5 HOH A 71 1070 144 HOH HOH . I 5 HOH A 72 1071 145 HOH HOH . I 5 HOH A 73 1072 146 HOH HOH . I 5 HOH A 74 1073 147 HOH HOH . I 5 HOH A 75 1074 148 HOH HOH . I 5 HOH A 76 1075 149 HOH HOH . I 5 HOH A 77 1076 150 HOH HOH . I 5 HOH A 78 1077 151 HOH HOH . I 5 HOH A 79 1078 152 HOH HOH . I 5 HOH A 80 1079 153 HOH HOH . I 5 HOH A 81 1080 154 HOH HOH . I 5 HOH A 82 1081 155 HOH HOH . I 5 HOH A 83 1082 156 HOH HOH . I 5 HOH A 84 1083 157 HOH HOH . I 5 HOH A 85 1084 158 HOH HOH . I 5 HOH A 86 1085 159 HOH HOH . J 5 HOH B 1 999 43 HOH HOH . J 5 HOH B 2 1000 44 HOH HOH . J 5 HOH B 3 1001 45 HOH HOH . J 5 HOH B 4 1002 46 HOH HOH . J 5 HOH B 5 1003 47 HOH HOH . J 5 HOH B 6 1004 48 HOH HOH . J 5 HOH B 7 1005 49 HOH HOH . J 5 HOH B 8 1006 50 HOH HOH . J 5 HOH B 9 1007 51 HOH HOH . J 5 HOH B 10 1008 52 HOH HOH . J 5 HOH B 11 1009 53 HOH HOH . J 5 HOH B 12 1010 54 HOH HOH . J 5 HOH B 13 1011 55 HOH HOH . J 5 HOH B 14 1012 56 HOH HOH . J 5 HOH B 15 1013 57 HOH HOH . J 5 HOH B 16 1014 58 HOH HOH . J 5 HOH B 17 1015 59 HOH HOH . J 5 HOH B 18 1016 60 HOH HOH . J 5 HOH B 19 1017 61 HOH HOH . J 5 HOH B 20 1018 62 HOH HOH . J 5 HOH B 21 1019 63 HOH HOH . J 5 HOH B 22 1020 64 HOH HOH . J 5 HOH B 23 1021 65 HOH HOH . J 5 HOH B 24 1022 66 HOH HOH . J 5 HOH B 25 1023 67 HOH HOH . J 5 HOH B 26 1024 68 HOH HOH . J 5 HOH B 27 1025 69 HOH HOH . J 5 HOH B 28 1026 71 HOH HOH . J 5 HOH B 29 1027 72 HOH HOH . J 5 HOH B 30 1028 73 HOH HOH . J 5 HOH B 31 1029 75 HOH HOH . J 5 HOH B 32 1030 76 HOH HOH . J 5 HOH B 33 1031 77 HOH HOH . J 5 HOH B 34 1032 78 HOH HOH . J 5 HOH B 35 1033 79 HOH HOH . J 5 HOH B 36 1034 80 HOH HOH . J 5 HOH B 37 1035 81 HOH HOH . J 5 HOH B 38 1036 82 HOH HOH . J 5 HOH B 39 1037 83 HOH HOH . J 5 HOH B 40 1038 84 HOH HOH . J 5 HOH B 41 1039 85 HOH HOH . J 5 HOH B 42 1040 86 HOH HOH . J 5 HOH B 43 1041 87 HOH HOH . J 5 HOH B 44 1042 88 HOH HOH . J 5 HOH B 45 1043 94 HOH HOH . J 5 HOH B 46 1044 115 HOH HOH . J 5 HOH B 47 1045 116 HOH HOH . J 5 HOH B 48 1046 117 HOH HOH . J 5 HOH B 49 1047 118 HOH HOH . J 5 HOH B 50 1048 120 HOH HOH . J 5 HOH B 51 1049 121 HOH HOH . J 5 HOH B 52 1050 122 HOH HOH . J 5 HOH B 53 1051 123 HOH HOH . J 5 HOH B 54 1052 124 HOH HOH . J 5 HOH B 55 1053 125 HOH HOH . J 5 HOH B 56 1054 126 HOH HOH . J 5 HOH B 57 1055 127 HOH HOH . J 5 HOH B 58 1056 128 HOH HOH . J 5 HOH B 59 1057 129 HOH HOH . J 5 HOH B 60 1058 130 HOH HOH . J 5 HOH B 61 1059 131 HOH HOH . J 5 HOH B 62 1060 132 HOH HOH . J 5 HOH B 63 1061 133 HOH HOH . J 5 HOH B 64 1062 134 HOH HOH . J 5 HOH B 65 1063 135 HOH HOH . J 5 HOH B 66 1064 136 HOH HOH . J 5 HOH B 67 1065 137 HOH HOH . J 5 HOH B 68 1066 138 HOH HOH . J 5 HOH B 69 1067 139 HOH HOH . J 5 HOH B 70 1068 140 HOH HOH . J 5 HOH B 71 1069 141 HOH HOH . J 5 HOH B 72 1070 142 HOH HOH . J 5 HOH B 73 1071 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 4 -3.763 29.431 24.508 1 22.26 ? P AMP 999 A 1 HETATM 2 O O1P AMP . . . E 4 -2.924 28.487 25.345 1 22.16 ? O1P AMP 999 A 1 HETATM 3 O O2P AMP . . . E 4 -3.796 30.874 24.986 1 24.29 ? O2P AMP 999 A 1 HETATM 4 O O3P AMP . . . E 4 -3.456 29.316 23.056 1 21.02 ? O3P AMP 999 A 1 HETATM 5 O O5' AMP . . . E 4 -5.263 28.873 24.628 1 19.2 ? O5' AMP 999 A 1 HETATM 6 C C5' AMP . . . E 4 -5.563 27.527 24.239 1 15.68 ? C5' AMP 999 A 1 HETATM 7 C C4' AMP . . . E 4 -6.994 27.262 24.678 1 13 ? C4' AMP 999 A 1 HETATM 8 O O4' AMP . . . E 4 -7.892 27.991 23.837 1 10.59 ? O4' AMP 999 A 1 HETATM 9 C C3' AMP . . . E 4 -7.411 25.807 24.594 1 11.21 ? C3' AMP 999 A 1 HETATM 10 O O3' AMP . . . E 4 -7.175 25.101 25.81 1 10.52 ? O3' AMP 999 A 1 HETATM 11 C C2' AMP . . . E 4 -8.896 25.922 24.326 1 11.11 ? C2' AMP 999 A 1 HETATM 12 O O2' AMP . . . E 4 -9.691 26.203 25.495 1 11.07 ? O2' AMP 999 A 1 HETATM 13 C C1' AMP . . . E 4 -8.979 27.155 23.473 1 10.45 ? C1' AMP 999 A 1 HETATM 14 N N9 AMP . . . E 4 -8.944 26.763 22.045 1 10.24 ? N9 AMP 999 A 1 HETATM 15 C C8 AMP . . . E 4 -7.913 26.97 21.215 1 9.78 ? C8 AMP 999 A 1 HETATM 16 N N7 AMP . . . E 4 -8.216 26.51 19.977 1 10.26 ? N7 AMP 999 A 1 HETATM 17 C C5 AMP . . . E 4 -9.45 26.003 20.016 1 8.95 ? C5 AMP 999 A 1 HETATM 18 C C6 AMP . . . E 4 -10.337 25.375 19.024 1 10.26 ? C6 AMP 999 A 1 HETATM 19 N N6 AMP . . . E 4 -9.848 25.245 17.76 1 10.14 ? N6 AMP 999 A 1 HETATM 20 N N1 AMP . . . E 4 -11.576 24.962 19.424 1 9.16 ? N1 AMP 999 A 1 HETATM 21 C C2 AMP . . . E 4 -11.982 25.138 20.706 1 9.99 ? C2 AMP 999 A 1 HETATM 22 N N3 AMP . . . E 4 -11.218 25.718 21.672 1 10.27 ? N3 AMP 999 A 1 HETATM 23 C C4 AMP . . . E 4 -9.947 26.16 21.382 1 9.85 ? C4 AMP 999 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #