data_2P2I # _model_server_result.job_id BQOSMO_2H5Fn0PEIrFtMSw _model_server_result.datetime_utc '2025-01-25 23:39:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 2P2I # _exptl.entry_id 2P2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-phenoxyphenyl)-2-[(pyridin-4-ylmethyl)amino]nicotinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.51 _cell.angle_gamma 90 _cell.entry_id 2P2I _cell.length_a 55.42 _cell.length_b 67.06 _cell.length_c 88.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H20 N4 O2' _chem_comp.formula_weight 396.441 _chem_comp.id 608 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-phenoxyphenyl)-2-[(pyridin-4-ylmethyl)amino]nicotinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 N4 608 doub 1 n y C9 C8 608 sing 2 n y N4 C16 608 sing 3 n y C8 C18 608 doub 4 n y C16 C17 608 doub 5 n y C18 C17 608 sing 6 n y C18 C7 608 sing 7 n n C22 N3 608 doub 8 n y C22 C21 608 sing 9 n y N3 C23 608 sing 10 n y C7 N1 608 sing 11 n n C21 C20 608 doub 12 n y C23 N1 608 sing 13 n n C23 C19 608 doub 14 n y C20 C19 608 sing 15 n y C19 C24 608 sing 16 n n C24 O1 608 doub 17 n n C24 N2 608 sing 18 n n N2 C12 608 sing 19 n n C12 C11 608 doub 20 n y C12 C13 608 sing 21 n y C11 C10 608 sing 22 n y C13 C14 608 doub 23 n y C10 C15 608 doub 24 n y C14 C15 608 sing 25 n y C15 O2 608 sing 26 n n O2 C5 608 sing 27 n n C5 C4 608 doub 28 n y C5 C6 608 sing 29 n y C4 C3 608 sing 30 n y C6 C1 608 doub 31 n y C3 C2 608 doub 32 n y C1 C2 608 sing 33 n y C10 H10 608 sing 34 n n C11 H11 608 sing 35 n n C13 H13 608 sing 36 n n C14 H14 608 sing 37 n n C16 H16 608 sing 38 n n C17 H17 608 sing 39 n n C8 H8 608 sing 40 n n C9 H9 608 sing 41 n n C20 H20 608 sing 42 n n C21 H21 608 sing 43 n n C22 H22 608 sing 44 n n N1 HN1 608 sing 45 n n C7 H71 608 sing 46 n n C7 H72 608 sing 47 n n N2 HN2 608 sing 48 n n C1 H1 608 sing 49 n n C2 H2 608 sing 50 n n C3 H3 608 sing 51 n n C4 H4 608 sing 52 n n C6 H6 608 sing 53 n n # _atom_sites.entry_id 2P2I _atom_sites.fract_transf_matrix[1][1] 0.018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 608 A 1 501 501 608 608 . D 2 608 B 1 502 502 608 608 . E 3 HOH A 1 1 1 HOH WAT . E 3 HOH A 2 2 2 HOH WAT . E 3 HOH A 3 3 3 HOH WAT . E 3 HOH A 4 4 4 HOH WAT . E 3 HOH A 5 7 7 HOH WAT . E 3 HOH A 6 8 8 HOH WAT . E 3 HOH A 7 9 9 HOH WAT . E 3 HOH A 8 10 10 HOH WAT . E 3 HOH A 9 12 12 HOH WAT . E 3 HOH A 10 13 13 HOH WAT . E 3 HOH A 11 15 15 HOH WAT . E 3 HOH A 12 17 17 HOH WAT . E 3 HOH A 13 18 18 HOH WAT . E 3 HOH A 14 19 19 HOH WAT . E 3 HOH A 15 20 20 HOH WAT . E 3 HOH A 16 21 21 HOH WAT . E 3 HOH A 17 22 22 HOH WAT . E 3 HOH A 18 23 23 HOH WAT . E 3 HOH A 19 24 24 HOH WAT . E 3 HOH A 20 25 25 HOH WAT . E 3 HOH A 21 26 26 HOH WAT . E 3 HOH A 22 27 27 HOH WAT . E 3 HOH A 23 28 28 HOH WAT . E 3 HOH A 24 29 29 HOH WAT . E 3 HOH A 25 30 30 HOH WAT . E 3 HOH A 26 32 32 HOH WAT . E 3 HOH A 27 33 33 HOH WAT . E 3 HOH A 28 34 34 HOH WAT . E 3 HOH A 29 35 35 HOH WAT . E 3 HOH A 30 36 36 HOH WAT . E 3 HOH A 31 39 39 HOH WAT . E 3 HOH A 32 40 40 HOH WAT . E 3 HOH A 33 41 41 HOH WAT . E 3 HOH A 34 43 43 HOH WAT . E 3 HOH A 35 44 44 HOH WAT . E 3 HOH A 36 46 46 HOH WAT . E 3 HOH A 37 47 47 HOH WAT . E 3 HOH A 38 51 51 HOH WAT . E 3 HOH A 39 53 53 HOH WAT . E 3 HOH A 40 55 55 HOH WAT . E 3 HOH A 41 60 60 HOH WAT . E 3 HOH A 42 61 61 HOH WAT . E 3 HOH A 43 64 64 HOH WAT . E 3 HOH A 44 65 65 HOH WAT . E 3 HOH A 45 66 66 HOH WAT . E 3 HOH A 46 67 67 HOH WAT . E 3 HOH A 47 68 68 HOH WAT . E 3 HOH A 48 72 72 HOH WAT . E 3 HOH A 49 85 85 HOH WAT . E 3 HOH A 50 96 96 HOH WAT . E 3 HOH A 51 97 97 HOH WAT . E 3 HOH A 52 98 98 HOH WAT . E 3 HOH A 53 99 99 HOH WAT . E 3 HOH A 54 100 100 HOH WAT . E 3 HOH A 55 101 101 HOH WAT . E 3 HOH A 56 102 102 HOH WAT . E 3 HOH A 57 103 103 HOH WAT . E 3 HOH A 58 104 104 HOH WAT . E 3 HOH A 59 105 105 HOH WAT . E 3 HOH A 60 106 106 HOH WAT . E 3 HOH A 61 107 107 HOH WAT . E 3 HOH A 62 108 108 HOH WAT . E 3 HOH A 63 109 109 HOH WAT . E 3 HOH A 64 111 111 HOH WAT . E 3 HOH A 65 112 112 HOH WAT . E 3 HOH A 66 113 113 HOH WAT . E 3 HOH A 67 114 114 HOH WAT . E 3 HOH A 68 117 117 HOH WAT . E 3 HOH A 69 118 118 HOH WAT . E 3 HOH A 70 119 119 HOH WAT . E 3 HOH A 71 120 120 HOH WAT . E 3 HOH A 72 121 121 HOH WAT . E 3 HOH A 73 123 123 HOH WAT . E 3 HOH A 74 124 124 HOH WAT . E 3 HOH A 75 125 125 HOH WAT . E 3 HOH A 76 126 126 HOH WAT . E 3 HOH A 77 127 127 HOH WAT . E 3 HOH A 78 128 128 HOH WAT . E 3 HOH A 79 129 129 HOH WAT . E 3 HOH A 80 130 130 HOH WAT . E 3 HOH A 81 131 131 HOH WAT . E 3 HOH A 82 132 132 HOH WAT . E 3 HOH A 83 133 133 HOH WAT . E 3 HOH A 84 134 134 HOH WAT . F 3 HOH B 1 5 5 HOH WAT . F 3 HOH B 2 6 6 HOH WAT . F 3 HOH B 3 16 16 HOH WAT . F 3 HOH B 4 31 31 HOH WAT . F 3 HOH B 5 37 37 HOH WAT . F 3 HOH B 6 42 42 HOH WAT . F 3 HOH B 7 45 45 HOH WAT . F 3 HOH B 8 48 48 HOH WAT . F 3 HOH B 9 49 49 HOH WAT . F 3 HOH B 10 50 50 HOH WAT . F 3 HOH B 11 52 52 HOH WAT . F 3 HOH B 12 54 54 HOH WAT . F 3 HOH B 13 56 56 HOH WAT . F 3 HOH B 14 57 57 HOH WAT . F 3 HOH B 15 58 58 HOH WAT . F 3 HOH B 16 59 59 HOH WAT . F 3 HOH B 17 62 62 HOH WAT . F 3 HOH B 18 63 63 HOH WAT . F 3 HOH B 19 69 69 HOH WAT . F 3 HOH B 20 70 70 HOH WAT . F 3 HOH B 21 71 71 HOH WAT . F 3 HOH B 22 73 73 HOH WAT . F 3 HOH B 23 74 74 HOH WAT . F 3 HOH B 24 76 76 HOH WAT . F 3 HOH B 25 77 77 HOH WAT . F 3 HOH B 26 78 78 HOH WAT . F 3 HOH B 27 79 79 HOH WAT . F 3 HOH B 28 80 80 HOH WAT . F 3 HOH B 29 83 83 HOH WAT . F 3 HOH B 30 84 84 HOH WAT . F 3 HOH B 31 86 86 HOH WAT . F 3 HOH B 32 87 87 HOH WAT . F 3 HOH B 33 88 88 HOH WAT . F 3 HOH B 34 89 89 HOH WAT . F 3 HOH B 35 90 90 HOH WAT . F 3 HOH B 36 93 93 HOH WAT . F 3 HOH B 37 94 94 HOH WAT . F 3 HOH B 38 95 95 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 608 . . . D 2 24.992 5.126 31.341 1 32.36 ? C10 608 502 B 1 HETATM 2 C C11 608 . . . D 2 24.602 5.134 29.973 1 30.86 ? C11 608 502 B 1 HETATM 3 C C12 608 . . . D 2 23.572 4.205 29.533 1 29 ? C12 608 502 B 1 HETATM 4 C C13 608 . . . D 2 22.906 3.248 30.401 1 28.98 ? C13 608 502 B 1 HETATM 5 C C14 608 . . . D 2 23.29 3.227 31.785 1 31.7 ? C14 608 502 B 1 HETATM 6 C C15 608 . . . D 2 24.326 4.181 32.213 1 34.92 ? C15 608 502 B 1 HETATM 7 C C16 608 . . . D 2 27.508 6.642 22.839 1 19.83 ? C16 608 502 B 1 HETATM 8 N N4 608 . . . D 2 28.189 6.285 21.69 1 20.32 ? N4 608 502 B 1 HETATM 9 C C17 608 . . . D 2 26.881 5.589 23.582 1 15.85 ? C17 608 502 B 1 HETATM 10 C C18 608 . . . D 2 27.039 4.265 23.027 1 17.86 ? C18 608 502 B 1 HETATM 11 C C8 608 . . . D 2 27.766 3.939 21.816 1 17.1 ? C8 608 502 B 1 HETATM 12 C C9 608 . . . D 2 28.367 5.041 21.128 1 19.37 ? C9 608 502 B 1 HETATM 13 C C19 608 . . . D 2 23.503 4.022 25.898 1 18.1 ? C19 608 502 B 1 HETATM 14 C C20 608 . . . D 2 22.149 4.367 25.749 1 17.22 ? C20 608 502 B 1 HETATM 15 C C21 608 . . . D 2 21.576 4.431 24.454 1 17.73 ? C21 608 502 B 1 HETATM 16 C C22 608 . . . D 2 22.392 4.136 23.31 1 19.23 ? C22 608 502 B 1 HETATM 17 N N3 608 . . . D 2 23.696 3.796 23.466 1 19.55 ? N3 608 502 B 1 HETATM 18 C C23 608 . . . D 2 24.255 3.736 24.728 1 19.13 ? C23 608 502 B 1 HETATM 19 N N1 608 . . . D 2 25.559 3.423 24.854 1 18.11 ? N1 608 502 B 1 HETATM 20 C C7 608 . . . D 2 26.383 3.08 23.724 1 16.88 ? C7 608 502 B 1 HETATM 21 C C24 608 . . . D 2 24.119 4.041 27.213 1 23.31 ? C24 608 502 B 1 HETATM 22 N N2 608 . . . D 2 23.216 4.273 28.214 1 24.51 ? N2 608 502 B 1 HETATM 23 O O1 608 . . . D 2 25.333 3.884 27.396 1 21.74 ? O1 608 502 B 1 HETATM 24 O O2 608 . . . D 2 24.791 4.35 33.532 1 37.5 ? O2 608 502 B 1 HETATM 25 C C1 608 . . . D 2 23.568 2.499 36.538 1 41.39 ? C1 608 502 B 1 HETATM 26 C C2 608 . . . D 2 22.592 3.464 37.013 1 41.53 ? C2 608 502 B 1 HETATM 27 C C3 608 . . . D 2 22.319 4.728 36.343 1 40.27 ? C3 608 502 B 1 HETATM 28 C C4 608 . . . D 2 23.065 5.038 35.132 1 39.93 ? C4 608 502 B 1 HETATM 29 C C5 608 . . . D 2 24.039 4.083 34.655 1 38.69 ? C5 608 502 B 1 HETATM 30 C C6 608 . . . D 2 24.307 2.816 35.332 1 42.06 ? C6 608 502 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #