data_2P2R
#
_model_server_result.job_id            m8XXumniihZWlsrCJ1DxBg 
_model_server_result.datetime_utc      '2024-11-04 20:29:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    2P2R 
#
_exptl.entry_id    2P2R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              111.102 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-AMINOPYRIMIDIN-2(1H)-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2P2R 
_cell.length_a            81.069 
_cell.length_b            81.069 
_cell.length_c            87.815 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLN 32 A GLN 315 1_555 B N MSE 33 A MSE 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 B C MSE 33 A MSE 316 1_555 B N SER 34 A SER 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
hydrog 'DA-DC MISPAIR' hydrog1 A N3 DA 2 B DA 499 1_555 A N4 DC 3 B DC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C4 H5 N3 O' 
_chem_comp.formula_weight    111.102 
_chem_comp.id                CYT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-AMINOPYRIMIDIN-2(1H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CYTOSINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C4 CYT sing 83 n y 
N3 C2 CYT sing 84 n y 
N3 HN3 CYT sing 85 n n 
C4 N4 CYT sing 86 n n 
C4 C5 CYT doub 87 n y 
N1 C2 CYT sing 88 n y 
N1 C6 CYT doub 89 n y 
C2 O2 CYT doub 90 n n 
N4 HN41 CYT sing 91 n n 
N4 HN42 CYT sing 92 n n 
C5 C6 CYT sing 93 n y 
C5 H5 CYT sing 94 n n 
C6 H6 CYT sing 95 n n 
#
_atom_sites.entry_id                     2P2R 
_atom_sites.fract_transf_matrix[1][1]    0.012335 
_atom_sites.fract_transf_matrix[1][2]    0.007122 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014243 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CYT A 1 501 501 CYT CYT . 
D 4 HOH B 1 12 12 HOH HOH . 
D 4 HOH B 2 13 13 HOH HOH . 
D 4 HOH B 3 15 15 HOH HOH . 
D 4 HOH B 4 22 22 HOH HOH . 
D 4 HOH B 5 25 25 HOH HOH . 
D 4 HOH B 6 31 31 HOH HOH . 
D 4 HOH B 7 33 33 HOH HOH . 
D 4 HOH B 8 35 35 HOH HOH . 
D 4 HOH B 9 40 40 HOH HOH . 
D 4 HOH B 10 47 47 HOH HOH . 
D 4 HOH B 11 59 59 HOH HOH . 
D 4 HOH B 12 60 60 HOH HOH . 
D 4 HOH B 13 67 67 HOH HOH . 
D 4 HOH B 14 68 68 HOH HOH . 
D 4 HOH B 15 70 70 HOH HOH . 
D 4 HOH B 16 72 72 HOH HOH . 
D 4 HOH B 17 73 73 HOH HOH . 
D 4 HOH B 18 78 78 HOH HOH . 
D 4 HOH B 19 82 82 HOH HOH . 
E 4 HOH A 1 1 1 HOH HOH . 
E 4 HOH A 2 2 2 HOH HOH . 
E 4 HOH A 3 3 3 HOH HOH . 
E 4 HOH A 4 4 4 HOH HOH . 
E 4 HOH A 5 5 5 HOH HOH . 
E 4 HOH A 6 6 6 HOH HOH . 
E 4 HOH A 7 7 7 HOH HOH . 
E 4 HOH A 8 8 8 HOH HOH . 
E 4 HOH A 9 9 9 HOH HOH . 
E 4 HOH A 10 10 10 HOH HOH . 
E 4 HOH A 11 11 11 HOH HOH . 
E 4 HOH A 12 14 14 HOH HOH . 
E 4 HOH A 13 16 16 HOH HOH . 
E 4 HOH A 14 17 17 HOH HOH . 
E 4 HOH A 15 18 18 HOH HOH . 
E 4 HOH A 16 19 19 HOH HOH . 
E 4 HOH A 17 20 20 HOH HOH . 
E 4 HOH A 18 21 21 HOH HOH . 
E 4 HOH A 19 23 23 HOH HOH . 
E 4 HOH A 20 24 24 HOH HOH . 
E 4 HOH A 21 26 26 HOH HOH . 
E 4 HOH A 22 27 27 HOH HOH . 
E 4 HOH A 23 28 28 HOH HOH . 
E 4 HOH A 24 29 29 HOH HOH . 
E 4 HOH A 25 30 30 HOH HOH . 
E 4 HOH A 26 32 32 HOH HOH . 
E 4 HOH A 27 34 34 HOH HOH . 
E 4 HOH A 28 36 36 HOH HOH . 
E 4 HOH A 29 37 37 HOH HOH . 
E 4 HOH A 30 38 38 HOH HOH . 
E 4 HOH A 31 39 39 HOH HOH . 
E 4 HOH A 32 42 42 HOH HOH . 
E 4 HOH A 33 43 43 HOH HOH . 
E 4 HOH A 34 44 44 HOH HOH . 
E 4 HOH A 35 45 45 HOH HOH . 
E 4 HOH A 36 46 46 HOH HOH . 
E 4 HOH A 37 48 48 HOH HOH . 
E 4 HOH A 38 49 49 HOH HOH . 
E 4 HOH A 39 50 50 HOH HOH . 
E 4 HOH A 40 51 51 HOH HOH . 
E 4 HOH A 41 52 52 HOH HOH . 
E 4 HOH A 42 53 53 HOH HOH . 
E 4 HOH A 43 54 54 HOH HOH . 
E 4 HOH A 44 55 55 HOH HOH . 
E 4 HOH A 45 56 56 HOH HOH . 
E 4 HOH A 46 57 57 HOH HOH . 
E 4 HOH A 47 58 58 HOH HOH . 
E 4 HOH A 48 61 61 HOH HOH . 
E 4 HOH A 49 62 62 HOH HOH . 
E 4 HOH A 50 63 63 HOH HOH . 
E 4 HOH A 51 64 64 HOH HOH . 
E 4 HOH A 52 65 65 HOH HOH . 
E 4 HOH A 53 66 66 HOH HOH . 
E 4 HOH A 54 69 69 HOH HOH . 
E 4 HOH A 55 71 71 HOH HOH . 
E 4 HOH A 56 74 74 HOH HOH . 
E 4 HOH A 57 75 75 HOH HOH . 
E 4 HOH A 58 76 76 HOH HOH . 
E 4 HOH A 59 77 77 HOH HOH . 
E 4 HOH A 60 79 79 HOH HOH . 
E 4 HOH A 61 80 80 HOH HOH . 
E 4 HOH A 62 81 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 CYT . . . C 3 26.611 29.592 43.25 1 42.07 ? N3 CYT 501 A 1 
HETATM 2 C C4 CYT . . . C 3 26.568 29.983 41.974 1 42.42 ? C4 CYT 501 A 1 
HETATM 3 N N1 CYT . . . C 3 27.642 27.549 42.537 1 42.45 ? N1 CYT 501 A 1 
HETATM 4 C C2 CYT . . . C 3 27.141 28.374 43.561 1 42.58 ? C2 CYT 501 A 1 
HETATM 5 O O2 CYT . . . C 3 27.197 27.975 44.725 1 44.9 ? O2 CYT 501 A 1 
HETATM 6 N N4 CYT . . . C 3 26.032 31.179 41.707 1 44.38 ? N4 CYT 501 A 1 
HETATM 7 C C5 CYT . . . C 3 27.063 29.158 40.912 1 42.69 ? C5 CYT 501 A 1 
HETATM 8 C C6 CYT . . . C 3 27.592 27.969 41.237 1 41.9 ? C6 CYT 501 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#