data_2P2V # _model_server_result.job_id xFzip9cTIDdwqWbJOZo_WA _model_server_result.datetime_utc '2024-11-14 21:01:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":708}' # _entry.id 2P2V # _exptl.entry_id 2P2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P2V _cell.length_a 112.388 _cell.length_b 112.388 _cell.length_c 58.757 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 157 n n C1 C2 EDO sing 158 n n C1 H11 EDO sing 159 n n C1 H12 EDO sing 160 n n O1 HO1 EDO sing 161 n n C2 O2 EDO sing 162 n n C2 H21 EDO sing 163 n n C2 H22 EDO sing 164 n n O2 HO2 EDO sing 165 n n # _atom_sites.entry_id 2P2V _atom_sites.fract_transf_matrix[1][1] 0.008898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 800 800 CL CL . C 3 EDO A 1 701 701 EDO EDO . D 3 EDO A 1 702 702 EDO EDO . E 3 EDO A 1 703 703 EDO EDO . F 3 EDO A 1 704 704 EDO EDO . G 3 EDO A 1 705 705 EDO EDO . H 3 EDO A 1 706 706 EDO EDO . I 3 EDO A 1 707 707 EDO EDO . J 3 EDO A 1 708 708 EDO EDO . K 3 EDO A 1 709 709 EDO EDO . L 3 EDO A 1 710 710 EDO EDO . M 3 EDO A 1 711 711 EDO EDO . N 3 EDO A 1 712 712 EDO EDO . O 4 CSF A 1 1001 1001 CSF CSF . P 5 HOH A 1 401 401 HOH HOH . P 5 HOH A 2 402 402 HOH HOH . P 5 HOH A 3 403 403 HOH HOH . P 5 HOH A 4 404 404 HOH HOH . P 5 HOH A 5 405 405 HOH HOH . P 5 HOH A 6 406 406 HOH HOH . P 5 HOH A 7 407 407 HOH HOH . P 5 HOH A 8 408 408 HOH HOH . P 5 HOH A 9 409 409 HOH HOH . P 5 HOH A 10 410 410 HOH HOH . P 5 HOH A 11 411 411 HOH HOH . P 5 HOH A 12 412 412 HOH HOH . P 5 HOH A 13 413 413 HOH HOH . P 5 HOH A 14 414 414 HOH HOH . P 5 HOH A 15 415 415 HOH HOH . P 5 HOH A 16 416 416 HOH HOH . P 5 HOH A 17 417 417 HOH HOH . P 5 HOH A 18 418 418 HOH HOH . P 5 HOH A 19 419 419 HOH HOH . P 5 HOH A 20 420 420 HOH HOH . P 5 HOH A 21 421 421 HOH HOH . P 5 HOH A 22 422 422 HOH HOH . P 5 HOH A 23 423 423 HOH HOH . P 5 HOH A 24 424 424 HOH HOH . P 5 HOH A 25 425 425 HOH HOH . P 5 HOH A 26 426 426 HOH HOH . P 5 HOH A 27 427 427 HOH HOH . P 5 HOH A 28 428 428 HOH HOH . P 5 HOH A 29 429 429 HOH HOH . P 5 HOH A 30 430 430 HOH HOH . P 5 HOH A 31 431 431 HOH HOH . P 5 HOH A 32 432 432 HOH HOH . P 5 HOH A 33 433 433 HOH HOH . P 5 HOH A 34 434 434 HOH HOH . P 5 HOH A 35 435 435 HOH HOH . P 5 HOH A 36 436 436 HOH HOH . P 5 HOH A 37 437 437 HOH HOH . P 5 HOH A 38 438 438 HOH HOH . P 5 HOH A 39 439 439 HOH HOH . P 5 HOH A 40 440 440 HOH HOH . P 5 HOH A 41 441 441 HOH HOH . P 5 HOH A 42 442 442 HOH HOH . P 5 HOH A 43 443 443 HOH HOH . P 5 HOH A 44 444 444 HOH HOH . P 5 HOH A 45 446 446 HOH HOH . P 5 HOH A 46 447 447 HOH HOH . P 5 HOH A 47 448 448 HOH HOH . P 5 HOH A 48 449 449 HOH HOH . P 5 HOH A 49 450 450 HOH HOH . P 5 HOH A 50 451 451 HOH HOH . P 5 HOH A 51 452 452 HOH HOH . P 5 HOH A 52 453 453 HOH HOH . P 5 HOH A 53 454 454 HOH HOH . P 5 HOH A 54 455 455 HOH HOH . P 5 HOH A 55 456 456 HOH HOH . P 5 HOH A 56 457 457 HOH HOH . P 5 HOH A 57 458 458 HOH HOH . P 5 HOH A 58 459 459 HOH HOH . P 5 HOH A 59 460 460 HOH HOH . P 5 HOH A 60 461 461 HOH HOH . P 5 HOH A 61 462 462 HOH HOH . P 5 HOH A 62 463 463 HOH HOH . P 5 HOH A 63 464 464 HOH HOH . P 5 HOH A 64 465 465 HOH HOH . P 5 HOH A 65 466 466 HOH HOH . P 5 HOH A 66 467 467 HOH HOH . P 5 HOH A 67 468 468 HOH HOH . P 5 HOH A 68 469 469 HOH HOH . P 5 HOH A 69 470 470 HOH HOH . P 5 HOH A 70 471 471 HOH HOH . P 5 HOH A 71 472 472 HOH HOH . P 5 HOH A 72 473 473 HOH HOH . P 5 HOH A 73 474 474 HOH HOH . P 5 HOH A 74 475 475 HOH HOH . P 5 HOH A 75 476 476 HOH HOH . P 5 HOH A 76 477 477 HOH HOH . P 5 HOH A 77 478 478 HOH HOH . P 5 HOH A 78 479 479 HOH HOH . P 5 HOH A 79 480 480 HOH HOH . P 5 HOH A 80 481 481 HOH HOH . P 5 HOH A 81 482 482 HOH HOH . P 5 HOH A 82 483 483 HOH HOH . P 5 HOH A 83 484 484 HOH HOH . P 5 HOH A 84 485 485 HOH HOH . P 5 HOH A 85 486 486 HOH HOH . P 5 HOH A 86 487 487 HOH HOH . P 5 HOH A 87 488 488 HOH HOH . P 5 HOH A 88 489 489 HOH HOH . P 5 HOH A 89 491 491 HOH HOH . P 5 HOH A 90 492 492 HOH HOH . P 5 HOH A 91 493 493 HOH HOH . P 5 HOH A 92 494 494 HOH HOH . P 5 HOH A 93 495 495 HOH HOH . P 5 HOH A 94 496 496 HOH HOH . P 5 HOH A 95 498 498 HOH HOH . P 5 HOH A 96 499 499 HOH HOH . P 5 HOH A 97 500 500 HOH HOH . P 5 HOH A 98 501 501 HOH HOH . P 5 HOH A 99 502 502 HOH HOH . P 5 HOH A 100 503 503 HOH HOH . P 5 HOH A 101 504 504 HOH HOH . P 5 HOH A 102 505 505 HOH HOH . P 5 HOH A 103 506 506 HOH HOH . P 5 HOH A 104 507 507 HOH HOH . P 5 HOH A 105 508 508 HOH HOH . P 5 HOH A 106 509 509 HOH HOH . P 5 HOH A 107 510 510 HOH HOH . P 5 HOH A 108 511 511 HOH HOH . P 5 HOH A 109 512 512 HOH HOH . P 5 HOH A 110 513 513 HOH HOH . P 5 HOH A 111 514 514 HOH HOH . P 5 HOH A 112 515 515 HOH HOH . P 5 HOH A 113 516 516 HOH HOH . P 5 HOH A 114 517 517 HOH HOH . P 5 HOH A 115 518 518 HOH HOH . P 5 HOH A 116 519 519 HOH HOH . P 5 HOH A 117 521 521 HOH HOH . P 5 HOH A 118 522 522 HOH HOH . P 5 HOH A 119 523 523 HOH HOH . P 5 HOH A 120 525 525 HOH HOH . P 5 HOH A 121 526 526 HOH HOH . P 5 HOH A 122 527 527 HOH HOH . P 5 HOH A 123 528 528 HOH HOH . P 5 HOH A 124 530 530 HOH HOH . P 5 HOH A 125 532 532 HOH HOH . P 5 HOH A 126 533 533 HOH HOH . P 5 HOH A 127 534 534 HOH HOH . P 5 HOH A 128 535 535 HOH HOH . P 5 HOH A 129 536 536 HOH HOH . P 5 HOH A 130 539 539 HOH HOH . P 5 HOH A 131 540 540 HOH HOH . P 5 HOH A 132 541 541 HOH HOH . P 5 HOH A 133 542 542 HOH HOH . P 5 HOH A 134 543 543 HOH HOH . P 5 HOH A 135 544 544 HOH HOH . P 5 HOH A 136 545 545 HOH HOH . P 5 HOH A 137 546 546 HOH HOH . P 5 HOH A 138 547 547 HOH HOH . P 5 HOH A 139 548 548 HOH HOH . P 5 HOH A 140 549 549 HOH HOH . P 5 HOH A 141 551 551 HOH HOH . P 5 HOH A 142 552 552 HOH HOH . P 5 HOH A 143 553 553 HOH HOH . P 5 HOH A 144 554 554 HOH HOH . P 5 HOH A 145 555 555 HOH HOH . P 5 HOH A 146 557 557 HOH HOH . P 5 HOH A 147 558 558 HOH HOH . P 5 HOH A 148 559 559 HOH HOH . P 5 HOH A 149 560 560 HOH HOH . P 5 HOH A 150 561 561 HOH HOH . P 5 HOH A 151 562 562 HOH HOH . P 5 HOH A 152 564 564 HOH HOH . P 5 HOH A 153 565 565 HOH HOH . P 5 HOH A 154 566 566 HOH HOH . P 5 HOH A 155 568 568 HOH HOH . P 5 HOH A 156 569 569 HOH HOH . P 5 HOH A 157 570 570 HOH HOH . P 5 HOH A 158 571 571 HOH HOH . P 5 HOH A 159 572 572 HOH HOH . P 5 HOH A 160 573 573 HOH HOH . P 5 HOH A 161 575 575 HOH HOH . P 5 HOH A 162 576 576 HOH HOH . P 5 HOH A 163 577 577 HOH HOH . P 5 HOH A 164 578 578 HOH HOH . P 5 HOH A 165 579 579 HOH HOH . P 5 HOH A 166 580 580 HOH HOH . P 5 HOH A 167 581 581 HOH HOH . P 5 HOH A 168 582 582 HOH HOH . P 5 HOH A 169 583 583 HOH HOH . P 5 HOH A 170 584 584 HOH HOH . P 5 HOH A 171 585 585 HOH HOH . P 5 HOH A 172 586 586 HOH HOH . P 5 HOH A 173 588 588 HOH HOH . P 5 HOH A 174 589 589 HOH HOH . P 5 HOH A 175 590 590 HOH HOH . P 5 HOH A 176 591 591 HOH HOH . P 5 HOH A 177 592 592 HOH HOH . P 5 HOH A 178 593 593 HOH HOH . P 5 HOH A 179 594 594 HOH HOH . P 5 HOH A 180 595 595 HOH HOH . P 5 HOH A 181 596 596 HOH HOH . P 5 HOH A 182 597 597 HOH HOH . P 5 HOH A 183 598 598 HOH HOH . P 5 HOH A 184 599 599 HOH HOH . P 5 HOH A 185 600 600 HOH HOH . P 5 HOH A 186 601 601 HOH HOH . P 5 HOH A 187 603 603 HOH HOH . P 5 HOH A 188 604 604 HOH HOH . P 5 HOH A 189 605 605 HOH HOH . P 5 HOH A 190 606 606 HOH HOH . P 5 HOH A 191 607 607 HOH HOH . P 5 HOH A 192 608 608 HOH HOH . P 5 HOH A 193 609 609 HOH HOH . P 5 HOH A 194 610 610 HOH HOH . P 5 HOH A 195 611 611 HOH HOH . P 5 HOH A 196 614 614 HOH HOH . P 5 HOH A 197 615 615 HOH HOH . P 5 HOH A 198 616 616 HOH HOH . P 5 HOH A 199 618 618 HOH HOH . P 5 HOH A 200 619 619 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 13.524 26.149 11.848 1 52.76 ? C1 EDO 708 A 1 HETATM 2 O O1 EDO . . . J 3 14.72 25.651 12.444 1 52.34 ? O1 EDO 708 A 1 HETATM 3 C C2 EDO . . . J 3 13.94 27.022 10.674 1 54.19 ? C2 EDO 708 A 1 HETATM 4 O O2 EDO . . . J 3 12.866 27.044 9.733 1 51.79 ? O2 EDO 708 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #