data_2P2X
#
_model_server_result.job_id            8n9BIzzaJhbE856GviaQyA 
_model_server_result.datetime_utc      '2024-10-14 00:26:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    2P2X 
#
_exptl.entry_id    2P2X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2P2X 
_cell.length_a            105.01 
_cell.length_b            105.01 
_cell.length_c            139.209 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P2X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PQS tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_466 y-1,x+1,-z+1 0 1 0 1 0 0 0 0 -1 -105.01 105.01 139.209 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     2P2X 
_atom_sites.fract_transf_matrix[1][1]    0.009523 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009523 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 301 301 SAH SAH . 
D 2 SAH A 1 302 302 SAH SAH . 
E 3 HOH A 1 303 4 HOH HOH . 
E 3 HOH A 2 304 8 HOH HOH . 
E 3 HOH A 3 305 12 HOH HOH . 
E 3 HOH A 4 306 13 HOH HOH . 
E 3 HOH A 5 307 20 HOH HOH . 
E 3 HOH A 6 308 21 HOH HOH . 
E 3 HOH A 7 309 24 HOH HOH . 
E 3 HOH A 8 310 28 HOH HOH . 
E 3 HOH A 9 311 30 HOH HOH . 
E 3 HOH A 10 312 31 HOH HOH . 
E 3 HOH A 11 313 32 HOH HOH . 
E 3 HOH A 12 314 33 HOH HOH . 
E 3 HOH A 13 315 35 HOH HOH . 
E 3 HOH A 14 316 38 HOH HOH . 
E 3 HOH A 15 317 43 HOH HOH . 
E 3 HOH A 16 318 45 HOH HOH . 
E 3 HOH A 17 319 46 HOH HOH . 
E 3 HOH A 18 320 47 HOH HOH . 
E 3 HOH A 19 321 48 HOH HOH . 
E 3 HOH A 20 322 52 HOH HOH . 
E 3 HOH A 21 323 53 HOH HOH . 
E 3 HOH A 22 324 55 HOH HOH . 
E 3 HOH A 23 325 56 HOH HOH . 
E 3 HOH A 24 326 57 HOH HOH . 
E 3 HOH A 25 327 58 HOH HOH . 
E 3 HOH A 26 328 59 HOH HOH . 
E 3 HOH A 27 329 60 HOH HOH . 
E 3 HOH A 28 330 63 HOH HOH . 
E 3 HOH A 29 331 66 HOH HOH . 
E 3 HOH A 30 332 67 HOH HOH . 
F 3 HOH B 1 266 1 HOH HOH . 
F 3 HOH B 2 267 2 HOH HOH . 
F 3 HOH B 3 268 3 HOH HOH . 
F 3 HOH B 4 269 5 HOH HOH . 
F 3 HOH B 5 270 6 HOH HOH . 
F 3 HOH B 6 271 7 HOH HOH . 
F 3 HOH B 7 272 9 HOH HOH . 
F 3 HOH B 8 273 10 HOH HOH . 
F 3 HOH B 9 274 11 HOH HOH . 
F 3 HOH B 10 275 14 HOH HOH . 
F 3 HOH B 11 276 15 HOH HOH . 
F 3 HOH B 12 277 16 HOH HOH . 
F 3 HOH B 13 278 17 HOH HOH . 
F 3 HOH B 14 279 18 HOH HOH . 
F 3 HOH B 15 280 19 HOH HOH . 
F 3 HOH B 16 281 22 HOH HOH . 
F 3 HOH B 17 282 23 HOH HOH . 
F 3 HOH B 18 283 25 HOH HOH . 
F 3 HOH B 19 284 26 HOH HOH . 
F 3 HOH B 20 285 27 HOH HOH . 
F 3 HOH B 21 286 29 HOH HOH . 
F 3 HOH B 22 287 34 HOH HOH . 
F 3 HOH B 23 288 36 HOH HOH . 
F 3 HOH B 24 289 37 HOH HOH . 
F 3 HOH B 25 290 39 HOH HOH . 
F 3 HOH B 26 291 40 HOH HOH . 
F 3 HOH B 27 292 41 HOH HOH . 
F 3 HOH B 28 293 42 HOH HOH . 
F 3 HOH B 29 294 44 HOH HOH . 
F 3 HOH B 30 295 49 HOH HOH . 
F 3 HOH B 31 296 50 HOH HOH . 
F 3 HOH B 32 297 51 HOH HOH . 
F 3 HOH B 33 298 54 HOH HOH . 
F 3 HOH B 34 299 61 HOH HOH . 
F 3 HOH B 35 300 62 HOH HOH . 
F 3 HOH B 36 301 64 HOH HOH . 
F 3 HOH B 37 302 65 HOH HOH . 
F 3 HOH B 38 303 68 HOH HOH . 
F 3 HOH B 39 304 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . C 2 34.299 92.962 68.416 1 42.6 ? N SAH 301 A 1 
HETATM 2 C CA SAH . . . C 2 32.908 92.687 68.027 1 43.37 ? CA SAH 301 A 1 
HETATM 3 C CB SAH . . . C 2 32.151 92.075 69.208 1 43.82 ? CB SAH 301 A 1 
HETATM 4 C CG SAH . . . C 2 32.797 90.766 69.667 1 44.66 ? CG SAH 301 A 1 
HETATM 5 S SD SAH . . . C 2 31.897 89.972 71.048 1 44.55 ? SD SAH 301 A 1 
HETATM 6 C C SAH . . . C 2 32.242 94.001 67.616 1 43.24 ? C SAH 301 A 1 
HETATM 7 O O SAH . . . C 2 32.926 95.014 67.473 1 44.28 ? O SAH 301 A 1 
HETATM 8 O OXT SAH . . . C 2 31.028 94.06 67.427 1 42.11 ? OXT SAH 301 A 1 
HETATM 9 C C5' SAH . . . C 2 30.762 88.877 70.119 1 40.66 ? C5' SAH 301 A 1 
HETATM 10 C C4' SAH . . . C 2 29.329 88.887 70.655 1 36.76 ? C4' SAH 301 A 1 
HETATM 11 O O4' SAH . . . C 2 28.695 90.161 70.444 1 37.67 ? O4' SAH 301 A 1 
HETATM 12 C C3' SAH . . . C 2 28.458 87.873 69.915 1 36.85 ? C3' SAH 301 A 1 
HETATM 13 O O3' SAH . . . C 2 28.585 86.599 70.552 1 35.04 ? O3' SAH 301 A 1 
HETATM 14 C C2' SAH . . . C 2 27.08 88.453 70.224 1 37.06 ? C2' SAH 301 A 1 
HETATM 15 O O2' SAH . . . C 2 26.755 88.251 71.602 1 36.62 ? O2' SAH 301 A 1 
HETATM 16 C C1' SAH . . . C 2 27.356 89.936 69.962 1 37.48 ? C1' SAH 301 A 1 
HETATM 17 N N9 SAH . . . C 2 27.338 90.241 68.512 1 36.5 ? N9 SAH 301 A 1 
HETATM 18 C C8 SAH . . . C 2 28.41 90.453 67.751 1 37.05 ? C8 SAH 301 A 1 
HETATM 19 N N7 SAH . . . C 2 28.031 90.76 66.513 1 36.49 ? N7 SAH 301 A 1 
HETATM 20 C C5 SAH . . . C 2 26.702 90.739 66.482 1 34.85 ? C5 SAH 301 A 1 
HETATM 21 C C6 SAH . . . C 2 25.752 90.972 65.496 1 35.19 ? C6 SAH 301 A 1 
HETATM 22 N N6 SAH . . . C 2 26.132 91.299 64.263 1 33.34 ? N6 SAH 301 A 1 
HETATM 23 N N1 SAH . . . C 2 24.451 90.865 65.805 1 35.78 ? N1 SAH 301 A 1 
HETATM 24 C C2 SAH . . . C 2 24.062 90.545 67.028 1 36.07 ? C2 SAH 301 A 1 
HETATM 25 N N3 SAH . . . C 2 24.941 90.317 67.989 1 36.02 ? N3 SAH 301 A 1 
HETATM 26 C C4 SAH . . . C 2 26.258 90.405 67.754 1 35.38 ? C4 SAH 301 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#