data_2P3F
#
_model_server_result.job_id            Tkw2VLDaEjs28unagFHKKQ 
_model_server_result.datetime_utc      '2024-12-21 16:59:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    2P3F 
#
_exptl.entry_id    2P3F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2P3F 
_cell.length_a            137.17 
_cell.length_b            137.17 
_cell.length_c            167.67 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 H CYS 22 1_555 A SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf2 A SG CYS 27 H CYS 42 1_555 A SG CYS 43 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 108 H CYS 122 1_555 B SG CYS 48 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf4 A SG CYS 156 H CYS 168 1_555 A SG CYS 170 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
disulf ? disulf5 A SG CYS 181 H CYS 191 1_555 A SG CYS 209 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 B SG CYS 5 L CYS 89 1_555 B SG CYS 16 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf7 B SG CYS 12 L CYS 96 1_555 B SG CYS 25 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf8 B SG CYS 27 L CYS 111 1_555 B SG CYS 40 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf9 C SG CYS 7 N CYS 6 1_555 C SG CYS 49 N CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf10 C SG CYS 16 N CYS 15 1_555 C SG CYS 43 N CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf11 C SG CYS 22 N CYS 21 1_555 C SG CYS 38 N CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf12 C SG CYS 26 N CYS 25 1_555 C SG CYS 70 N CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf13 C SG CYS 51 N CYS 50 1_555 C SG CYS 64 N CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 D NA NA . H NA 1 1_555 A O TYR 173 H TYR 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc2 D NA NA . H NA 1 1_555 A O ASP 174 H ASP 185 1_555 ? ? ? A ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc3 D NA NA . H NA 1 1_555 A O ARG 211 H ARG 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc4 D NA NA . H NA 1 1_555 A O LYS 214 H LYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2P3F 
_atom_sites.fract_transf_matrix[1][1]    0.00729 
_atom_sites.fract_transf_matrix[1][2]    0.004209 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008418 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005964 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NA H 1 1 1 NA NA . 
E 5 HOH H 1 246 1 HOH WAT . 
E 5 HOH H 2 247 2 HOH WAT . 
E 5 HOH H 3 248 3 HOH WAT . 
E 5 HOH H 4 249 4 HOH WAT . 
E 5 HOH H 5 250 6 HOH WAT . 
E 5 HOH H 6 251 7 HOH WAT . 
E 5 HOH H 7 252 8 HOH WAT . 
E 5 HOH H 8 253 9 HOH WAT . 
E 5 HOH H 9 254 10 HOH WAT . 
E 5 HOH H 10 255 13 HOH WAT . 
E 5 HOH H 11 256 14 HOH WAT . 
E 5 HOH H 12 257 16 HOH WAT . 
E 5 HOH H 13 258 17 HOH WAT . 
E 5 HOH H 14 259 18 HOH WAT . 
E 5 HOH H 15 260 19 HOH WAT . 
E 5 HOH H 16 261 20 HOH WAT . 
E 5 HOH H 17 262 21 HOH WAT . 
E 5 HOH H 18 263 22 HOH WAT . 
E 5 HOH H 19 264 25 HOH WAT . 
E 5 HOH H 20 265 26 HOH WAT . 
E 5 HOH H 21 266 27 HOH WAT . 
E 5 HOH H 22 267 28 HOH WAT . 
E 5 HOH H 23 268 29 HOH WAT . 
E 5 HOH H 24 269 30 HOH WAT . 
E 5 HOH H 25 270 35 HOH WAT . 
E 5 HOH H 26 271 37 HOH WAT . 
E 5 HOH H 27 272 38 HOH WAT . 
E 5 HOH H 28 273 40 HOH WAT . 
E 5 HOH H 29 274 43 HOH WAT . 
E 5 HOH H 30 275 48 HOH WAT . 
E 5 HOH H 31 276 50 HOH WAT . 
E 5 HOH H 32 277 51 HOH WAT . 
E 5 HOH H 33 278 52 HOH WAT . 
F 5 HOH L 1 139 5 HOH WAT . 
F 5 HOH L 2 140 15 HOH WAT . 
F 5 HOH L 3 141 24 HOH WAT . 
F 5 HOH L 4 142 31 HOH WAT . 
F 5 HOH L 5 143 32 HOH WAT . 
F 5 HOH L 6 144 36 HOH WAT . 
F 5 HOH L 7 145 45 HOH WAT . 
F 5 HOH L 8 146 47 HOH WAT . 
F 5 HOH L 9 147 49 HOH WAT . 
G 5 HOH N 1 78 11 HOH WAT . 
G 5 HOH N 2 79 12 HOH WAT . 
G 5 HOH N 3 80 23 HOH WAT . 
G 5 HOH N 4 81 33 HOH WAT . 
G 5 HOH N 5 82 34 HOH WAT . 
G 5 HOH N 6 83 39 HOH WAT . 
G 5 HOH N 7 84 41 HOH WAT . 
G 5 HOH N 8 85 42 HOH WAT . 
G 5 HOH N 9 86 44 HOH WAT . 
G 5 HOH N 10 87 46 HOH WAT . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               53.013 
_atom_site.Cartn_y               60.326 
_atom_site.Cartn_z               63.875 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.63 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              146 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           981 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#