data_2P3K # _model_server_result.job_id Vg5vZ-mhsOZH9lSJHTMoNw _model_server_result.datetime_utc '2024-10-17 15:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p3k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 2P3K # _exptl.entry_id 2P3K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.296 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P3K _cell.length_a 47.887 _cell.length_b 47.887 _cell.length_c 129.932 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P3K _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H21 N O9' _chem_comp.formula_weight 323.296 _chem_comp.id MNA _chem_comp.mon_nstd_flag n _chem_comp.name '2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MNA sing 250 n n C1 O1A MNA doub 251 n n C1 O1B MNA sing 252 n n C2 C3 MNA sing 253 n n C2 O2 MNA sing 254 n n C2 O6 MNA sing 255 n n C3 C4 MNA sing 256 n n C3 H32 MNA sing 257 n n C3 H31 MNA sing 258 n n C4 C5 MNA sing 259 n n C4 O4 MNA sing 260 n n C4 H4 MNA sing 261 n n C5 C6 MNA sing 262 n n C5 N5 MNA sing 263 n n C5 H5 MNA sing 264 n n C6 C7 MNA sing 265 n n C6 O6 MNA sing 266 n n C6 H6 MNA sing 267 n n C7 C8 MNA sing 268 n n C7 O7 MNA sing 269 n n C7 H7 MNA sing 270 n n C8 C9 MNA sing 271 n n C8 O8 MNA sing 272 n n C8 H8 MNA sing 273 n n C9 O9 MNA sing 274 n n C9 H92 MNA sing 275 n n C9 H91 MNA sing 276 n n C10 C11 MNA sing 277 n n C10 N5 MNA sing 278 n n C10 O10 MNA doub 279 n n C11 H111 MNA sing 280 n n C11 H113 MNA sing 281 n n C11 H112 MNA sing 282 n n C12 O2 MNA sing 283 n n C12 H121 MNA sing 284 n n C12 H122 MNA sing 285 n n C12 H123 MNA sing 286 n n N5 HN5 MNA sing 287 n n O1B HO1B MNA sing 288 n n O4 HO4 MNA sing 289 n n O7 HO7 MNA sing 290 n n O8 HO8 MNA sing 291 n n O9 HO9 MNA sing 292 n n # _pdbx_chem_comp_identifier.comp_id MNA _pdbx_chem_comp_identifier.identifier '2-O-methyl-5-N-acetyl-a-D-neuraminic acid' _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2P3K _atom_sites.fract_transf_matrix[1][1] 0.020882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 3000 3000 SO4 SO4 . C 3 MNA A 1 1000 1000 MNA MNA . D 4 GOL A 1 4000 4000 GOL GOL . E 5 HOH A 1 4001 1 HOH HOH . E 5 HOH A 2 4002 2 HOH HOH . E 5 HOH A 3 4003 3 HOH HOH . E 5 HOH A 4 4004 4 HOH HOH . E 5 HOH A 5 4005 5 HOH HOH . E 5 HOH A 6 4006 6 HOH HOH . E 5 HOH A 7 4007 7 HOH HOH . E 5 HOH A 8 4008 8 HOH HOH . E 5 HOH A 9 4009 9 HOH HOH . E 5 HOH A 10 4010 10 HOH HOH . E 5 HOH A 11 4011 11 HOH HOH . E 5 HOH A 12 4012 12 HOH HOH . E 5 HOH A 13 4013 13 HOH HOH . E 5 HOH A 14 4014 14 HOH HOH . E 5 HOH A 15 4015 15 HOH HOH . E 5 HOH A 16 4016 16 HOH HOH . E 5 HOH A 17 4017 17 HOH HOH . E 5 HOH A 18 4018 18 HOH HOH . E 5 HOH A 19 4019 19 HOH HOH . E 5 HOH A 20 4020 20 HOH HOH . E 5 HOH A 21 4021 21 HOH HOH . E 5 HOH A 22 4022 22 HOH HOH . E 5 HOH A 23 4023 23 HOH HOH . E 5 HOH A 24 4024 24 HOH HOH . E 5 HOH A 25 4025 25 HOH HOH . E 5 HOH A 26 4026 26 HOH HOH . E 5 HOH A 27 4027 27 HOH HOH . E 5 HOH A 28 4028 28 HOH HOH . E 5 HOH A 29 4029 29 HOH HOH . E 5 HOH A 30 4030 30 HOH HOH . E 5 HOH A 31 4031 31 HOH HOH . E 5 HOH A 32 4032 32 HOH HOH . E 5 HOH A 33 4033 33 HOH HOH . E 5 HOH A 34 4034 34 HOH HOH . E 5 HOH A 35 4035 35 HOH HOH . E 5 HOH A 36 4036 36 HOH HOH . E 5 HOH A 37 4037 37 HOH HOH . E 5 HOH A 38 4038 38 HOH HOH . E 5 HOH A 39 4039 39 HOH HOH . E 5 HOH A 40 4040 40 HOH HOH . E 5 HOH A 41 4041 41 HOH HOH . E 5 HOH A 42 4042 42 HOH HOH . E 5 HOH A 43 4043 43 HOH HOH . E 5 HOH A 44 4044 44 HOH HOH . E 5 HOH A 45 4045 45 HOH HOH . E 5 HOH A 46 4046 46 HOH HOH . E 5 HOH A 47 4047 47 HOH HOH . E 5 HOH A 48 4048 48 HOH HOH . E 5 HOH A 49 4049 49 HOH HOH . E 5 HOH A 50 4050 50 HOH HOH . E 5 HOH A 51 4051 51 HOH HOH . E 5 HOH A 52 4052 52 HOH HOH . E 5 HOH A 53 4053 53 HOH HOH . E 5 HOH A 54 4054 54 HOH HOH . E 5 HOH A 55 4055 55 HOH HOH . E 5 HOH A 56 4056 56 HOH HOH . E 5 HOH A 57 4057 57 HOH HOH . E 5 HOH A 58 4058 58 HOH HOH . E 5 HOH A 59 4059 59 HOH HOH . E 5 HOH A 60 4060 60 HOH HOH . E 5 HOH A 61 4061 61 HOH HOH . E 5 HOH A 62 4062 62 HOH HOH . E 5 HOH A 63 4063 63 HOH HOH . E 5 HOH A 64 4064 64 HOH HOH . E 5 HOH A 65 4065 65 HOH HOH . E 5 HOH A 66 4066 66 HOH HOH . E 5 HOH A 67 4067 67 HOH HOH . E 5 HOH A 68 4068 68 HOH HOH . E 5 HOH A 69 4069 69 HOH HOH . E 5 HOH A 70 4070 70 HOH HOH . E 5 HOH A 71 4071 71 HOH HOH . E 5 HOH A 72 4072 72 HOH HOH . E 5 HOH A 73 4073 73 HOH HOH . E 5 HOH A 74 4074 74 HOH HOH . E 5 HOH A 75 4075 75 HOH HOH . E 5 HOH A 76 4076 76 HOH HOH . E 5 HOH A 77 4077 77 HOH HOH . E 5 HOH A 78 4078 78 HOH HOH . E 5 HOH A 79 4079 79 HOH HOH . E 5 HOH A 80 4080 80 HOH HOH . E 5 HOH A 81 4081 81 HOH HOH . E 5 HOH A 82 4082 82 HOH HOH . E 5 HOH A 83 4083 83 HOH HOH . E 5 HOH A 84 4084 84 HOH HOH . E 5 HOH A 85 4085 85 HOH HOH . E 5 HOH A 86 4086 86 HOH HOH . E 5 HOH A 87 4087 87 HOH HOH . E 5 HOH A 88 4088 88 HOH HOH . E 5 HOH A 89 4089 89 HOH HOH . E 5 HOH A 90 4090 90 HOH HOH . E 5 HOH A 91 4091 91 HOH HOH . E 5 HOH A 92 4092 92 HOH HOH . E 5 HOH A 93 4093 93 HOH HOH . E 5 HOH A 94 4094 94 HOH HOH . E 5 HOH A 95 4095 95 HOH HOH . E 5 HOH A 96 4096 96 HOH HOH . E 5 HOH A 97 4097 97 HOH HOH . E 5 HOH A 98 4098 98 HOH HOH . E 5 HOH A 99 4099 99 HOH HOH . E 5 HOH A 100 4100 100 HOH HOH . E 5 HOH A 101 4101 101 HOH HOH . E 5 HOH A 102 4102 102 HOH HOH . E 5 HOH A 103 4103 103 HOH HOH . E 5 HOH A 104 4104 104 HOH HOH . E 5 HOH A 105 4105 105 HOH HOH . E 5 HOH A 106 4106 106 HOH HOH . E 5 HOH A 107 4107 107 HOH HOH . E 5 HOH A 108 4108 108 HOH HOH . E 5 HOH A 109 4109 109 HOH HOH . E 5 HOH A 110 4110 110 HOH HOH . E 5 HOH A 111 4111 111 HOH HOH . E 5 HOH A 112 4112 112 HOH HOH . E 5 HOH A 113 4113 113 HOH HOH . E 5 HOH A 114 4114 114 HOH HOH . E 5 HOH A 115 4115 115 HOH HOH . E 5 HOH A 116 4116 116 HOH HOH . E 5 HOH A 117 4117 117 HOH HOH . E 5 HOH A 118 4118 118 HOH HOH . E 5 HOH A 119 4119 119 HOH HOH . E 5 HOH A 120 4120 120 HOH HOH . E 5 HOH A 121 4121 121 HOH HOH . E 5 HOH A 122 4122 122 HOH HOH . E 5 HOH A 123 4123 123 HOH HOH . E 5 HOH A 124 4124 124 HOH HOH . E 5 HOH A 125 4125 125 HOH HOH . E 5 HOH A 126 4126 126 HOH HOH . E 5 HOH A 127 4127 127 HOH HOH . E 5 HOH A 128 4128 128 HOH HOH . E 5 HOH A 129 4129 129 HOH HOH . E 5 HOH A 130 4130 130 HOH HOH . E 5 HOH A 131 4131 131 HOH HOH . E 5 HOH A 132 4132 132 HOH HOH . E 5 HOH A 133 4133 133 HOH HOH . E 5 HOH A 134 4134 134 HOH HOH . E 5 HOH A 135 4135 135 HOH HOH . E 5 HOH A 136 4136 136 HOH HOH . E 5 HOH A 137 4137 137 HOH HOH . E 5 HOH A 138 4138 138 HOH HOH . E 5 HOH A 139 4139 139 HOH HOH . E 5 HOH A 140 4140 140 HOH HOH . E 5 HOH A 141 4141 141 HOH HOH . E 5 HOH A 142 4142 142 HOH HOH . E 5 HOH A 143 4143 143 HOH HOH . E 5 HOH A 144 4144 144 HOH HOH . E 5 HOH A 145 4145 145 HOH HOH . E 5 HOH A 146 4146 146 HOH HOH . E 5 HOH A 147 4147 147 HOH HOH . E 5 HOH A 148 4148 148 HOH HOH . E 5 HOH A 149 4149 149 HOH HOH . E 5 HOH A 150 4150 150 HOH HOH . E 5 HOH A 151 4151 151 HOH HOH . E 5 HOH A 152 4152 152 HOH HOH . E 5 HOH A 153 4153 153 HOH HOH . E 5 HOH A 154 4154 154 HOH HOH . E 5 HOH A 155 4155 155 HOH HOH . E 5 HOH A 156 4156 156 HOH HOH . E 5 HOH A 157 4157 157 HOH HOH . E 5 HOH A 158 4158 158 HOH HOH . E 5 HOH A 159 4159 159 HOH HOH . E 5 HOH A 160 4160 160 HOH HOH . E 5 HOH A 161 4161 161 HOH HOH . E 5 HOH A 162 4162 162 HOH HOH . E 5 HOH A 163 4163 163 HOH HOH . E 5 HOH A 164 4164 164 HOH HOH . E 5 HOH A 165 4165 165 HOH HOH . E 5 HOH A 166 4166 166 HOH HOH . E 5 HOH A 167 4167 167 HOH HOH . E 5 HOH A 168 4168 168 HOH HOH . E 5 HOH A 169 4169 169 HOH HOH . E 5 HOH A 170 4170 170 HOH HOH . E 5 HOH A 171 4171 171 HOH HOH . E 5 HOH A 172 4172 172 HOH HOH . E 5 HOH A 173 4173 173 HOH HOH . E 5 HOH A 174 4174 174 HOH HOH . E 5 HOH A 175 4175 175 HOH HOH . E 5 HOH A 176 4176 176 HOH HOH . E 5 HOH A 177 4177 177 HOH HOH . E 5 HOH A 178 4178 178 HOH HOH . E 5 HOH A 179 4179 179 HOH HOH . E 5 HOH A 180 4180 180 HOH HOH . E 5 HOH A 181 4181 181 HOH HOH . E 5 HOH A 182 4182 182 HOH HOH . E 5 HOH A 183 4183 183 HOH HOH . E 5 HOH A 184 4184 184 HOH HOH . E 5 HOH A 185 4185 185 HOH HOH . E 5 HOH A 186 4186 186 HOH HOH . E 5 HOH A 187 4187 187 HOH HOH . E 5 HOH A 188 4188 188 HOH HOH . E 5 HOH A 189 4189 189 HOH HOH . E 5 HOH A 190 4190 190 HOH HOH . E 5 HOH A 191 4191 191 HOH HOH . E 5 HOH A 192 4192 192 HOH HOH . E 5 HOH A 193 4193 193 HOH HOH . E 5 HOH A 194 4194 194 HOH HOH . E 5 HOH A 195 4195 195 HOH HOH . E 5 HOH A 196 4196 196 HOH HOH . E 5 HOH A 197 4197 197 HOH HOH . E 5 HOH A 198 4198 198 HOH HOH . E 5 HOH A 199 4199 199 HOH HOH . E 5 HOH A 200 4200 200 HOH HOH . E 5 HOH A 201 4201 201 HOH HOH . E 5 HOH A 202 4202 202 HOH HOH . E 5 HOH A 203 4203 203 HOH HOH . E 5 HOH A 204 4204 204 HOH HOH . E 5 HOH A 205 4205 205 HOH HOH . E 5 HOH A 206 4206 206 HOH HOH . E 5 HOH A 207 4207 207 HOH HOH . E 5 HOH A 208 4208 208 HOH HOH . E 5 HOH A 209 4209 209 HOH HOH . E 5 HOH A 210 4210 210 HOH HOH . E 5 HOH A 211 4211 211 HOH HOH . E 5 HOH A 212 4212 212 HOH HOH . E 5 HOH A 213 4213 213 HOH HOH . E 5 HOH A 214 4214 214 HOH HOH . E 5 HOH A 215 4215 215 HOH HOH . E 5 HOH A 216 4216 216 HOH HOH . E 5 HOH A 217 4217 217 HOH HOH . E 5 HOH A 218 4218 218 HOH HOH . E 5 HOH A 219 4219 219 HOH HOH . E 5 HOH A 220 4220 220 HOH HOH . E 5 HOH A 221 4221 221 HOH HOH . E 5 HOH A 222 4222 222 HOH HOH . E 5 HOH A 223 4223 223 HOH HOH . E 5 HOH A 224 4224 224 HOH HOH . E 5 HOH A 225 4225 225 HOH HOH . E 5 HOH A 226 4226 226 HOH HOH . E 5 HOH A 227 4227 227 HOH HOH . E 5 HOH A 228 4228 228 HOH HOH . E 5 HOH A 229 4229 229 HOH HOH . E 5 HOH A 230 4230 230 HOH HOH . E 5 HOH A 231 4231 231 HOH HOH . E 5 HOH A 232 4232 232 HOH HOH . E 5 HOH A 233 4233 233 HOH HOH . E 5 HOH A 234 4234 234 HOH HOH . E 5 HOH A 235 4235 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MNA . . . C 3 43.697 10.131 18.033 1 8.06 ? C1 MNA 1000 A 1 HETATM 2 C C2 MNA . . . C 3 43.588 11.282 19.025 1 8.01 ? C2 MNA 1000 A 1 HETATM 3 C C3 MNA . . . C 3 44.635 12.372 18.786 1 6.68 ? C3 MNA 1000 A 1 HETATM 4 C C4 MNA . . . C 3 44.292 13.268 17.597 1 7.52 ? C4 MNA 1000 A 1 HETATM 5 C C5 MNA . . . C 3 42.864 13.802 17.696 1 7.32 ? C5 MNA 1000 A 1 HETATM 6 C C6 MNA . . . C 3 41.919 12.602 17.869 1 7.25 ? C6 MNA 1000 A 1 HETATM 7 C C7 MNA . . . C 3 40.432 12.94 17.965 1 7.12 ? C7 MNA 1000 A 1 HETATM 8 C C8 MNA . . . C 3 39.581 11.677 18.084 1 6.98 ? C8 MNA 1000 A 1 HETATM 9 C C9 MNA . . . C 3 38.137 11.999 17.72 1 7.28 ? C9 MNA 1000 A 1 HETATM 10 C C10 MNA . . . C 3 41.745 15.632 16.496 1 9.45 ? C10 MNA 1000 A 1 HETATM 11 C C11 MNA . . . C 3 41.438 16.226 15.153 1 9.63 ? C11 MNA 1000 A 1 HETATM 12 C C12 MNA . . . C 3 43.045 9.65 20.779 1 8.04 ? C12 MNA 1000 A 1 HETATM 13 N N5 MNA . . . C 3 42.532 14.545 16.492 1 7.92 ? N5 MNA 1000 A 1 HETATM 14 O O1A MNA . . . C 3 44.814 9.603 17.874 1 8.82 ? O1A MNA 1000 A 1 HETATM 15 O O1B MNA . . . C 3 42.679 9.719 17.424 1 8.3 ? O1B MNA 1000 A 1 HETATM 16 O O2 MNA . . . C 3 43.817 10.761 20.324 1 8.63 ? O2 MNA 1000 A 1 HETATM 17 O O4 MNA . . . C 3 45.262 14.318 17.528 1 8.05 ? O4 MNA 1000 A 1 HETATM 18 O O6 MNA . . . C 3 42.273 11.848 19.039 1 7.27 ? O6 MNA 1000 A 1 HETATM 19 O O7 MNA . . . C 3 40.202 13.752 19.125 1 8.3 ? O7 MNA 1000 A 1 HETATM 20 O O8 MNA . . . C 3 40.089 10.638 17.231 1 6.24 ? O8 MNA 1000 A 1 HETATM 21 O O9 MNA . . . C 3 37.338 10.809 17.807 1 8.42 ? O9 MNA 1000 A 1 HETATM 22 O O10 MNA . . . C 3 41.289 16.119 17.52 1 11.41 ? O10 MNA 1000 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #