data_2P3L
#
_model_server_result.job_id            BcdtWLVNpnCW8v7mYSyN4g 
_model_server_result.datetime_utc      '2024-11-06 02:56:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p3l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1001}' 
#
_entry.id    2P3L 
#
_exptl.entry_id    2P3L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2P3L 
_cell.length_a            108.722 
_cell.length_b            108.722 
_cell.length_c            55.921 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P3L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 18.640333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 392 n n 
N HN1 SAH sing 393 n n 
N HN2 SAH sing 394 n n 
CA CB SAH sing 395 n n 
CA C SAH sing 396 n n 
CA HA SAH sing 397 n n 
CB CG SAH sing 398 n n 
CB HB1 SAH sing 399 n n 
CB HB2 SAH sing 400 n n 
CG SD SAH sing 401 n n 
CG HG1 SAH sing 402 n n 
CG HG2 SAH sing 403 n n 
SD C5' SAH sing 404 n n 
C O SAH doub 405 n n 
C OXT SAH sing 406 n n 
OXT HXT SAH sing 407 n n 
C5' C4' SAH sing 408 n n 
C5' "H5'1" SAH sing 409 n n 
C5' "H5'2" SAH sing 410 n n 
C4' O4' SAH sing 411 n n 
C4' C3' SAH sing 412 n n 
C4' H4' SAH sing 413 n n 
O4' C1' SAH sing 414 n n 
C3' O3' SAH sing 415 n n 
C3' C2' SAH sing 416 n n 
C3' H3' SAH sing 417 n n 
O3' HO3' SAH sing 418 n n 
C2' O2' SAH sing 419 n n 
C2' C1' SAH sing 420 n n 
C2' H2' SAH sing 421 n n 
O2' HO2' SAH sing 422 n n 
C1' N9 SAH sing 423 n n 
C1' H1' SAH sing 424 n n 
N9 C8 SAH sing 425 n y 
N9 C4 SAH sing 426 n y 
C8 N7 SAH doub 427 n y 
C8 H8 SAH sing 428 n n 
N7 C5 SAH sing 429 n y 
C5 C6 SAH sing 430 n y 
C5 C4 SAH doub 431 n y 
C6 N6 SAH sing 432 n n 
C6 N1 SAH doub 433 n y 
N6 HN61 SAH sing 434 n n 
N6 HN62 SAH sing 435 n n 
N1 C2 SAH sing 436 n y 
C2 N3 SAH doub 437 n y 
C2 H2 SAH sing 438 n n 
N3 C4 SAH sing 439 n y 
#
_atom_sites.entry_id                     2P3L 
_atom_sites.fract_transf_matrix[1][1]    0.009198 
_atom_sites.fract_transf_matrix[1][2]    0.00531 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010621 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1005 1005 SO4 SO4 . 
C 2 SO4 A 1 1006 1006 SO4 SO4 . 
D 2 SO4 A 1 1007 1007 SO4 SO4 . 
E 2 SO4 A 1 1008 1008 SO4 SO4 . 
F 2 SO4 A 1 1009 1009 SO4 SO4 . 
G 3 SAH A 1 1001 1001 SAH SAH . 
H 4 G3A A 1 1002 1002 G3A G3A . 
I 5 CIT A 1 1003 1003 CIT CIT . 
J 6 GOL A 1 1004 1004 GOL GOL . 
K 7 HOH A 1 1010 1010 HOH HOH . 
K 7 HOH A 2 1011 1011 HOH HOH . 
K 7 HOH A 3 1012 1012 HOH HOH . 
K 7 HOH A 4 1013 1013 HOH HOH . 
K 7 HOH A 5 1014 1014 HOH HOH . 
K 7 HOH A 6 1015 1015 HOH HOH . 
K 7 HOH A 7 1016 1016 HOH HOH . 
K 7 HOH A 8 1017 1017 HOH HOH . 
K 7 HOH A 9 1018 1018 HOH HOH . 
K 7 HOH A 10 1019 1019 HOH HOH . 
K 7 HOH A 11 1020 1020 HOH HOH . 
K 7 HOH A 12 1021 1021 HOH HOH . 
K 7 HOH A 13 1022 1022 HOH HOH . 
K 7 HOH A 14 1023 1023 HOH HOH . 
K 7 HOH A 15 1024 1024 HOH HOH . 
K 7 HOH A 16 1025 1025 HOH HOH . 
K 7 HOH A 17 1026 1026 HOH HOH . 
K 7 HOH A 18 1027 1027 HOH HOH . 
K 7 HOH A 19 1028 1028 HOH HOH . 
K 7 HOH A 20 1029 1029 HOH HOH . 
K 7 HOH A 21 1030 1030 HOH HOH . 
K 7 HOH A 22 1031 1031 HOH HOH . 
K 7 HOH A 23 1032 1032 HOH HOH . 
K 7 HOH A 24 1033 1033 HOH HOH . 
K 7 HOH A 25 1034 1034 HOH HOH . 
K 7 HOH A 26 1035 1035 HOH HOH . 
K 7 HOH A 27 1036 1036 HOH HOH . 
K 7 HOH A 28 1037 1037 HOH HOH . 
K 7 HOH A 29 1038 1038 HOH HOH . 
K 7 HOH A 30 1039 1039 HOH HOH . 
K 7 HOH A 31 1040 1040 HOH HOH . 
K 7 HOH A 32 1041 1041 HOH HOH . 
K 7 HOH A 33 1042 1042 HOH HOH . 
K 7 HOH A 34 1043 1043 HOH HOH . 
K 7 HOH A 35 1044 1044 HOH HOH . 
K 7 HOH A 36 1045 1045 HOH HOH . 
K 7 HOH A 37 1046 1046 HOH HOH . 
K 7 HOH A 38 1047 1047 HOH HOH . 
K 7 HOH A 39 1048 1048 HOH HOH . 
K 7 HOH A 40 1049 1049 HOH HOH . 
K 7 HOH A 41 1050 1050 HOH HOH . 
K 7 HOH A 42 1051 1051 HOH HOH . 
K 7 HOH A 43 1052 1052 HOH HOH . 
K 7 HOH A 44 1053 1053 HOH HOH . 
K 7 HOH A 45 1054 1054 HOH HOH . 
K 7 HOH A 46 1055 1055 HOH HOH . 
K 7 HOH A 47 1056 1056 HOH HOH . 
K 7 HOH A 48 1057 1057 HOH HOH . 
K 7 HOH A 49 1058 1058 HOH HOH . 
K 7 HOH A 50 1059 1059 HOH HOH . 
K 7 HOH A 51 1060 1060 HOH HOH . 
K 7 HOH A 52 1061 1061 HOH HOH . 
K 7 HOH A 53 1062 1062 HOH HOH . 
K 7 HOH A 54 1063 1063 HOH HOH . 
K 7 HOH A 55 1064 1064 HOH HOH . 
K 7 HOH A 56 1065 1065 HOH HOH . 
K 7 HOH A 57 1066 1066 HOH HOH . 
K 7 HOH A 58 1067 1067 HOH HOH . 
K 7 HOH A 59 1068 1068 HOH HOH . 
K 7 HOH A 60 1069 1069 HOH HOH . 
K 7 HOH A 61 1070 1070 HOH HOH . 
K 7 HOH A 62 1071 1071 HOH HOH . 
K 7 HOH A 63 1072 1072 HOH HOH . 
K 7 HOH A 64 1073 1073 HOH HOH . 
K 7 HOH A 65 1074 1074 HOH HOH . 
K 7 HOH A 66 1075 1075 HOH HOH . 
K 7 HOH A 67 1076 1076 HOH HOH . 
K 7 HOH A 68 1077 1077 HOH HOH . 
K 7 HOH A 69 1078 1078 HOH HOH . 
K 7 HOH A 70 1079 1079 HOH HOH . 
K 7 HOH A 71 1080 1080 HOH HOH . 
K 7 HOH A 72 1081 1081 HOH HOH . 
K 7 HOH A 73 1082 1082 HOH HOH . 
K 7 HOH A 74 1083 1083 HOH HOH . 
K 7 HOH A 75 1084 1084 HOH HOH . 
K 7 HOH A 76 1085 1085 HOH HOH . 
K 7 HOH A 77 1086 1086 HOH HOH . 
K 7 HOH A 78 1087 1087 HOH HOH . 
K 7 HOH A 79 1088 1088 HOH HOH . 
K 7 HOH A 80 1089 1089 HOH HOH . 
K 7 HOH A 81 1090 1090 HOH HOH . 
K 7 HOH A 82 1091 1091 HOH HOH . 
K 7 HOH A 83 1092 1092 HOH HOH . 
K 7 HOH A 84 1093 1093 HOH HOH . 
K 7 HOH A 85 1094 1094 HOH HOH . 
K 7 HOH A 86 1095 1095 HOH HOH . 
K 7 HOH A 87 1096 1096 HOH HOH . 
K 7 HOH A 88 1097 1097 HOH HOH . 
K 7 HOH A 89 1098 1098 HOH HOH . 
K 7 HOH A 90 1099 1099 HOH HOH . 
K 7 HOH A 91 1100 1100 HOH HOH . 
K 7 HOH A 92 1101 1101 HOH HOH . 
K 7 HOH A 93 1102 1102 HOH HOH . 
K 7 HOH A 94 1103 1103 HOH HOH . 
K 7 HOH A 95 1104 1104 HOH HOH . 
K 7 HOH A 96 1105 1105 HOH HOH . 
K 7 HOH A 97 1106 1106 HOH HOH . 
K 7 HOH A 98 1107 1107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . G 3 33.289 -30.125 21.061 1 37.16 ? N SAH 1001 A 1 
HETATM 2 C CA SAH . . . G 3 33.141 -31.587 21.263 1 37.63 ? CA SAH 1001 A 1 
HETATM 3 C CB SAH . . . G 3 33.097 -32.254 19.908 1 37.95 ? CB SAH 1001 A 1 
HETATM 4 C CG SAH . . . G 3 31.822 -31.86 19.175 1 40.31 ? CG SAH 1001 A 1 
HETATM 5 S SD SAH . . . G 3 30.981 -33.375 18.726 1 47.09 ? SD SAH 1001 A 1 
HETATM 6 C C SAH . . . G 3 34.267 -32.167 22.11 1 37.47 ? C SAH 1001 A 1 
HETATM 7 O O SAH . . . G 3 35.177 -31.401 22.426 1 36.91 ? O SAH 1001 A 1 
HETATM 8 O OXT SAH . . . G 3 34.284 -33.364 22.488 1 36.63 ? OXT SAH 1001 A 1 
HETATM 9 C C5' SAH . . . G 3 29.426 -32.539 18.259 1 41.97 ? C5' SAH 1001 A 1 
HETATM 10 C C4' SAH . . . G 3 28.278 -33.284 18.951 1 39.44 ? C4' SAH 1001 A 1 
HETATM 11 O O4' SAH . . . G 3 27.037 -32.624 18.788 1 38.62 ? O4' SAH 1001 A 1 
HETATM 12 C C3' SAH . . . G 3 28.099 -34.707 18.432 1 38.21 ? C3' SAH 1001 A 1 
HETATM 13 O O3' SAH . . . G 3 28.401 -35.601 19.48 1 36.51 ? O3' SAH 1001 A 1 
HETATM 14 C C2' SAH . . . G 3 26.642 -34.83 18.037 1 37.9 ? C2' SAH 1001 A 1 
HETATM 15 O O2' SAH . . . G 3 26.104 -36.026 18.55 1 39.27 ? O2' SAH 1001 A 1 
HETATM 16 C C1' SAH . . . G 3 26.023 -33.606 18.696 1 35.93 ? C1' SAH 1001 A 1 
HETATM 17 N N9 SAH . . . G 3 24.843 -33.077 17.977 1 36.16 ? N9 SAH 1001 A 1 
HETATM 18 C C8 SAH . . . G 3 24.586 -32.968 16.625 1 34.3 ? C8 SAH 1001 A 1 
HETATM 19 N N7 SAH . . . G 3 23.364 -32.414 16.474 1 33.22 ? N7 SAH 1001 A 1 
HETATM 20 C C5 SAH . . . G 3 22.848 -32.158 17.702 1 34.5 ? C5 SAH 1001 A 1 
HETATM 21 C C6 SAH . . . G 3 21.641 -31.629 18.167 1 34.06 ? C6 SAH 1001 A 1 
HETATM 22 N N6 SAH . . . G 3 20.689 -31.225 17.344 1 35.04 ? N6 SAH 1001 A 1 
HETATM 23 N N1 SAH . . . G 3 21.419 -31.533 19.527 1 34.75 ? N1 SAH 1001 A 1 
HETATM 24 C C2 SAH . . . G 3 22.358 -31.941 20.439 1 33.44 ? C2 SAH 1001 A 1 
HETATM 25 N N3 SAH . . . G 3 23.544 -32.474 19.987 1 33.43 ? N3 SAH 1001 A 1 
HETATM 26 C C4 SAH . . . G 3 23.779 -32.569 18.651 1 34.87 ? C4 SAH 1001 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#