data_2P3L # _model_server_result.job_id B8TutSwKNrlRe9ZAP4YXKw _model_server_result.datetime_utc '2024-11-23 18:58:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 2P3L # _exptl.entry_id 2P3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 772.406 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P3L _cell.length_a 108.722 _cell.length_b 108.722 _cell.length_c 55.921 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 18.640333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H27 N10 O17 P3' _chem_comp.formula_weight 772.406 _chem_comp.id G3A _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 C36 G3A doub 103 n n C36 N31 G3A sing 104 n n C36 C35 G3A sing 105 n n N31 C32 G3A sing 106 n n N31 HN31 G3A sing 107 n n C32 N32 G3A sing 108 n n C32 N33 G3A doub 109 n n N32 H321 G3A sing 110 n n N32 H322 G3A sing 111 n n N33 C34 G3A sing 112 n n C35 C34 G3A doub 113 n y C35 N37 G3A sing 114 n y C34 N39 G3A sing 115 n y N37 C38 G3A doub 116 n y C38 N39 G3A sing 117 n y C38 H38 G3A sing 118 n n N39 C41 G3A sing 119 n n C41 C42 G3A sing 120 n n C41 O44 G3A sing 121 n n C41 H41 G3A sing 122 n n O44 C44 G3A sing 123 n n C42 O42 G3A sing 124 n n C42 C43 G3A sing 125 n n C42 H42 G3A sing 126 n n O42 HO42 G3A sing 127 n n C43 O43 G3A sing 128 n n C43 C44 G3A sing 129 n n C43 H43 G3A sing 130 n n O43 HO43 G3A sing 131 n n C44 C45 G3A sing 132 n n C44 H44 G3A sing 133 n n C45 O45 G3A sing 134 n n C45 H451 G3A sing 135 n n C45 H452 G3A sing 136 n n O45 PA G3A sing 137 n n PA O2A G3A doub 138 n n PA O1 G3A sing 139 n n PA O1A G3A sing 140 n n O1A HO1A G3A sing 141 n n O1 PB G3A sing 142 n n PB O3A G3A sing 143 n n PB O3B G3A doub 144 n n PB O2B G3A sing 145 n n O2B HO2B G3A sing 146 n n O3A PG G3A sing 147 n n PG O1G G3A doub 148 n n PG O25 G3A sing 149 n n PG O2G G3A sing 150 n n O2G HO2G G3A sing 151 n n O25 C25 G3A sing 152 n n C25 C24 G3A sing 153 n n C25 H251 G3A sing 154 n n C25 H252 G3A sing 155 n n C24 O24 G3A sing 156 n n C24 C23 G3A sing 157 n n C24 H24 G3A sing 158 n n C23 C22 G3A sing 159 n n C23 O23 G3A sing 160 n n C23 H23 G3A sing 161 n n O23 HO23 G3A sing 162 n n C22 C21 G3A sing 163 n n C22 O22 G3A sing 164 n n C22 H22 G3A sing 165 n n O22 HO22 G3A sing 166 n n O24 C21 G3A sing 167 n n C21 N19 G3A sing 168 n n C21 H21 G3A sing 169 n n N19 C14 G3A sing 170 n y N19 C18 G3A sing 171 n y C14 C15 G3A doub 172 n y C14 N13 G3A sing 173 n y N13 C12 G3A doub 174 n y C12 N11 G3A sing 175 n y C12 H12 G3A sing 176 n n N11 C16 G3A doub 177 n y C18 N17 G3A doub 178 n y C18 H18 G3A sing 179 n n N17 C15 G3A sing 180 n y C15 C16 G3A sing 181 n y C16 N16 G3A sing 182 n n N16 H161 G3A sing 183 n n N16 H162 G3A sing 184 n n # _atom_sites.entry_id 2P3L _atom_sites.fract_transf_matrix[1][1] 0.009198 _atom_sites.fract_transf_matrix[1][2] 0.00531 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1005 1005 SO4 SO4 . C 2 SO4 A 1 1006 1006 SO4 SO4 . D 2 SO4 A 1 1007 1007 SO4 SO4 . E 2 SO4 A 1 1008 1008 SO4 SO4 . F 2 SO4 A 1 1009 1009 SO4 SO4 . G 3 SAH A 1 1001 1001 SAH SAH . H 4 G3A A 1 1002 1002 G3A G3A . I 5 CIT A 1 1003 1003 CIT CIT . J 6 GOL A 1 1004 1004 GOL GOL . K 7 HOH A 1 1010 1010 HOH HOH . K 7 HOH A 2 1011 1011 HOH HOH . K 7 HOH A 3 1012 1012 HOH HOH . K 7 HOH A 4 1013 1013 HOH HOH . K 7 HOH A 5 1014 1014 HOH HOH . K 7 HOH A 6 1015 1015 HOH HOH . K 7 HOH A 7 1016 1016 HOH HOH . K 7 HOH A 8 1017 1017 HOH HOH . K 7 HOH A 9 1018 1018 HOH HOH . K 7 HOH A 10 1019 1019 HOH HOH . K 7 HOH A 11 1020 1020 HOH HOH . K 7 HOH A 12 1021 1021 HOH HOH . K 7 HOH A 13 1022 1022 HOH HOH . K 7 HOH A 14 1023 1023 HOH HOH . K 7 HOH A 15 1024 1024 HOH HOH . K 7 HOH A 16 1025 1025 HOH HOH . K 7 HOH A 17 1026 1026 HOH HOH . K 7 HOH A 18 1027 1027 HOH HOH . K 7 HOH A 19 1028 1028 HOH HOH . K 7 HOH A 20 1029 1029 HOH HOH . K 7 HOH A 21 1030 1030 HOH HOH . K 7 HOH A 22 1031 1031 HOH HOH . K 7 HOH A 23 1032 1032 HOH HOH . K 7 HOH A 24 1033 1033 HOH HOH . K 7 HOH A 25 1034 1034 HOH HOH . K 7 HOH A 26 1035 1035 HOH HOH . K 7 HOH A 27 1036 1036 HOH HOH . K 7 HOH A 28 1037 1037 HOH HOH . K 7 HOH A 29 1038 1038 HOH HOH . K 7 HOH A 30 1039 1039 HOH HOH . K 7 HOH A 31 1040 1040 HOH HOH . K 7 HOH A 32 1041 1041 HOH HOH . K 7 HOH A 33 1042 1042 HOH HOH . K 7 HOH A 34 1043 1043 HOH HOH . K 7 HOH A 35 1044 1044 HOH HOH . K 7 HOH A 36 1045 1045 HOH HOH . K 7 HOH A 37 1046 1046 HOH HOH . K 7 HOH A 38 1047 1047 HOH HOH . K 7 HOH A 39 1048 1048 HOH HOH . K 7 HOH A 40 1049 1049 HOH HOH . K 7 HOH A 41 1050 1050 HOH HOH . K 7 HOH A 42 1051 1051 HOH HOH . K 7 HOH A 43 1052 1052 HOH HOH . K 7 HOH A 44 1053 1053 HOH HOH . K 7 HOH A 45 1054 1054 HOH HOH . K 7 HOH A 46 1055 1055 HOH HOH . K 7 HOH A 47 1056 1056 HOH HOH . K 7 HOH A 48 1057 1057 HOH HOH . K 7 HOH A 49 1058 1058 HOH HOH . K 7 HOH A 50 1059 1059 HOH HOH . K 7 HOH A 51 1060 1060 HOH HOH . K 7 HOH A 52 1061 1061 HOH HOH . K 7 HOH A 53 1062 1062 HOH HOH . K 7 HOH A 54 1063 1063 HOH HOH . K 7 HOH A 55 1064 1064 HOH HOH . K 7 HOH A 56 1065 1065 HOH HOH . K 7 HOH A 57 1066 1066 HOH HOH . K 7 HOH A 58 1067 1067 HOH HOH . K 7 HOH A 59 1068 1068 HOH HOH . K 7 HOH A 60 1069 1069 HOH HOH . K 7 HOH A 61 1070 1070 HOH HOH . K 7 HOH A 62 1071 1071 HOH HOH . K 7 HOH A 63 1072 1072 HOH HOH . K 7 HOH A 64 1073 1073 HOH HOH . K 7 HOH A 65 1074 1074 HOH HOH . K 7 HOH A 66 1075 1075 HOH HOH . K 7 HOH A 67 1076 1076 HOH HOH . K 7 HOH A 68 1077 1077 HOH HOH . K 7 HOH A 69 1078 1078 HOH HOH . K 7 HOH A 70 1079 1079 HOH HOH . K 7 HOH A 71 1080 1080 HOH HOH . K 7 HOH A 72 1081 1081 HOH HOH . K 7 HOH A 73 1082 1082 HOH HOH . K 7 HOH A 74 1083 1083 HOH HOH . K 7 HOH A 75 1084 1084 HOH HOH . K 7 HOH A 76 1085 1085 HOH HOH . K 7 HOH A 77 1086 1086 HOH HOH . K 7 HOH A 78 1087 1087 HOH HOH . K 7 HOH A 79 1088 1088 HOH HOH . K 7 HOH A 80 1089 1089 HOH HOH . K 7 HOH A 81 1090 1090 HOH HOH . K 7 HOH A 82 1091 1091 HOH HOH . K 7 HOH A 83 1092 1092 HOH HOH . K 7 HOH A 84 1093 1093 HOH HOH . K 7 HOH A 85 1094 1094 HOH HOH . K 7 HOH A 86 1095 1095 HOH HOH . K 7 HOH A 87 1096 1096 HOH HOH . K 7 HOH A 88 1097 1097 HOH HOH . K 7 HOH A 89 1098 1098 HOH HOH . K 7 HOH A 90 1099 1099 HOH HOH . K 7 HOH A 91 1100 1100 HOH HOH . K 7 HOH A 92 1101 1101 HOH HOH . K 7 HOH A 93 1102 1102 HOH HOH . K 7 HOH A 94 1103 1103 HOH HOH . K 7 HOH A 95 1104 1104 HOH HOH . K 7 HOH A 96 1105 1105 HOH HOH . K 7 HOH A 97 1106 1106 HOH HOH . K 7 HOH A 98 1107 1107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O36 G3A . . . H 4 36.01 -42.233 1.26 1 31.9 ? O36 G3A 1002 A 1 HETATM 2 C C36 G3A . . . H 4 35.939 -41.072 0.794 1 31.31 ? C36 G3A 1002 A 1 HETATM 3 N N31 G3A . . . H 4 36.425 -40.784 -0.437 1 31.99 ? N31 G3A 1002 A 1 HETATM 4 C C32 G3A . . . H 4 36.341 -39.501 -0.935 1 31.34 ? C32 G3A 1002 A 1 HETATM 5 N N32 G3A . . . H 4 36.804 -39.205 -2.153 1 31.25 ? N32 G3A 1002 A 1 HETATM 6 N N33 G3A . . . H 4 35.773 -38.497 -0.238 1 30.52 ? N33 G3A 1002 A 1 HETATM 7 C C35 G3A . . . H 4 35.375 -40.045 1.548 1 30.6 ? C35 G3A 1002 A 1 HETATM 8 C C34 G3A . . . H 4 35.3 -38.76 1.007 1 31.22 ? C34 G3A 1002 A 1 HETATM 9 N N37 G3A . . . H 4 34.829 -39.997 2.78 1 31.29 ? N37 G3A 1002 A 1 HETATM 10 C C38 G3A . . . H 4 34.419 -38.721 2.98 1 31.41 ? C38 G3A 1002 A 1 HETATM 11 N N39 G3A . . . H 4 34.728 -37.972 1.904 1 30.83 ? N39 G3A 1002 A 1 HETATM 12 C C41 G3A . . . H 4 34.492 -36.518 1.694 1 31.67 ? C41 G3A 1002 A 1 HETATM 13 O O44 G3A . . . H 4 35.014 -35.764 2.805 1 30.49 ? O44 G3A 1002 A 1 HETATM 14 C C42 G3A . . . H 4 33.003 -36.226 1.588 1 30.63 ? C42 G3A 1002 A 1 HETATM 15 O O42 G3A . . . H 4 32.904 -35.093 0.736 1 29.39 ? O42 G3A 1002 A 1 HETATM 16 C C43 G3A . . . H 4 32.66 -35.817 2.995 1 31.67 ? C43 G3A 1002 A 1 HETATM 17 O O43 G3A . . . H 4 31.492 -34.988 3.041 1 32.81 ? O43 G3A 1002 A 1 HETATM 18 C C44 G3A . . . H 4 33.926 -35.104 3.458 1 33.23 ? C44 G3A 1002 A 1 HETATM 19 C C45 G3A . . . H 4 34.099 -35.15 4.962 1 36.05 ? C45 G3A 1002 A 1 HETATM 20 O O45 G3A . . . H 4 34.022 -36.494 5.393 1 43.05 ? O45 G3A 1002 A 1 HETATM 21 P PA G3A . . . H 4 34.094 -36.827 6.974 1 47.57 ? PA G3A 1002 A 1 HETATM 22 O O1A G3A . . . H 4 33.472 -35.765 7.842 1 48.33 ? O1A G3A 1002 A 1 HETATM 23 O O2A G3A . . . H 4 35.562 -37.144 7.119 1 48.31 ? O2A G3A 1002 A 1 HETATM 24 O O1 G3A . . . H 4 33.217 -38.141 7.188 1 47.24 ? O1 G3A 1002 A 1 HETATM 25 P PB G3A . . . H 4 31.606 -38.173 7.219 1 48.26 ? PB G3A 1002 A 1 HETATM 26 O O2B G3A . . . H 4 30.985 -37.369 8.327 1 47.36 ? O2B G3A 1002 A 1 HETATM 27 O O3B G3A . . . H 4 31.365 -39.658 7.219 1 50.96 ? O3B G3A 1002 A 1 HETATM 28 O O3A G3A . . . H 4 31.238 -37.595 5.764 1 47.77 ? O3A G3A 1002 A 1 HETATM 29 P PG G3A . . . H 4 29.88 -37.953 4.968 1 44.68 ? PG G3A 1002 A 1 HETATM 30 O O1G G3A . . . H 4 29.802 -36.938 3.877 1 43.28 ? O1G G3A 1002 A 1 HETATM 31 O O2G G3A . . . H 4 28.78 -38.003 5.983 1 47.17 ? O2G G3A 1002 A 1 HETATM 32 O O25 G3A . . . H 4 30.194 -39.413 4.359 1 44.32 ? O25 G3A 1002 A 1 HETATM 33 C C25 G3A . . . H 4 29.775 -40.64 4.982 1 41.8 ? C25 G3A 1002 A 1 HETATM 34 C C24 G3A . . . H 4 30.541 -41.828 4.4 1 41.24 ? C24 G3A 1002 A 1 HETATM 35 C C23 G3A . . . H 4 32.062 -41.689 4.442 1 40.02 ? C23 G3A 1002 A 1 HETATM 36 O O23 G3A . . . H 4 32.621 -42.219 5.642 1 43.36 ? O23 G3A 1002 A 1 HETATM 37 C C22 G3A . . . H 4 32.531 -42.484 3.246 1 39.36 ? C22 G3A 1002 A 1 HETATM 38 O O22 G3A . . . H 4 32.605 -43.889 3.557 1 39.72 ? O22 G3A 1002 A 1 HETATM 39 O O24 G3A . . . H 4 30.227 -41.974 2.998 1 39.95 ? O24 G3A 1002 A 1 HETATM 40 C C21 G3A . . . H 4 31.401 -42.325 2.253 1 36.37 ? C21 G3A 1002 A 1 HETATM 41 N N19 G3A . . . H 4 31.697 -41.247 1.278 1 35.52 ? N19 G3A 1002 A 1 HETATM 42 C C14 G3A . . . H 4 32.305 -41.455 0.116 1 35.16 ? C14 G3A 1002 A 1 HETATM 43 N N13 G3A . . . H 4 32.815 -42.55 -0.479 1 35.45 ? N13 G3A 1002 A 1 HETATM 44 C C12 G3A . . . H 4 33.39 -42.438 -1.697 1 35.41 ? C12 G3A 1002 A 1 HETATM 45 N N11 G3A . . . H 4 33.467 -41.254 -2.325 1 35.02 ? N11 G3A 1002 A 1 HETATM 46 C C18 G3A . . . H 4 31.399 -39.929 1.353 1 34.41 ? C18 G3A 1002 A 1 HETATM 47 N N17 G3A . . . H 4 31.829 -39.288 0.244 1 33.63 ? N17 G3A 1002 A 1 HETATM 48 C C15 G3A . . . H 4 32.384 -40.233 -0.53 1 35.35 ? C15 G3A 1002 A 1 HETATM 49 C C16 G3A . . . H 4 32.982 -40.131 -1.789 1 34.95 ? C16 G3A 1002 A 1 HETATM 50 N N16 G3A . . . H 4 33.089 -39.056 -2.422 1 34.19 ? N16 G3A 1002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 50 #