data_2P3L # _model_server_result.job_id pJW0HmzDeKiRWTRwIOuBgg _model_server_result.datetime_utc '2024-11-06 02:49:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1004}' # _entry.id 2P3L # _exptl.entry_id 2P3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P3L _cell.length_a 108.722 _cell.length_b 108.722 _cell.length_c 55.921 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 18.640333 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 231 n n C1 C2 GOL sing 232 n n C1 H11 GOL sing 233 n n C1 H12 GOL sing 234 n n O1 HO1 GOL sing 235 n n C2 O2 GOL sing 236 n n C2 C3 GOL sing 237 n n C2 H2 GOL sing 238 n n O2 HO2 GOL sing 239 n n C3 O3 GOL sing 240 n n C3 H31 GOL sing 241 n n C3 H32 GOL sing 242 n n O3 HO3 GOL sing 243 n n # _atom_sites.entry_id 2P3L _atom_sites.fract_transf_matrix[1][1] 0.009198 _atom_sites.fract_transf_matrix[1][2] 0.00531 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1005 1005 SO4 SO4 . C 2 SO4 A 1 1006 1006 SO4 SO4 . D 2 SO4 A 1 1007 1007 SO4 SO4 . E 2 SO4 A 1 1008 1008 SO4 SO4 . F 2 SO4 A 1 1009 1009 SO4 SO4 . G 3 SAH A 1 1001 1001 SAH SAH . H 4 G3A A 1 1002 1002 G3A G3A . I 5 CIT A 1 1003 1003 CIT CIT . J 6 GOL A 1 1004 1004 GOL GOL . K 7 HOH A 1 1010 1010 HOH HOH . K 7 HOH A 2 1011 1011 HOH HOH . K 7 HOH A 3 1012 1012 HOH HOH . K 7 HOH A 4 1013 1013 HOH HOH . K 7 HOH A 5 1014 1014 HOH HOH . K 7 HOH A 6 1015 1015 HOH HOH . K 7 HOH A 7 1016 1016 HOH HOH . K 7 HOH A 8 1017 1017 HOH HOH . K 7 HOH A 9 1018 1018 HOH HOH . K 7 HOH A 10 1019 1019 HOH HOH . K 7 HOH A 11 1020 1020 HOH HOH . K 7 HOH A 12 1021 1021 HOH HOH . K 7 HOH A 13 1022 1022 HOH HOH . K 7 HOH A 14 1023 1023 HOH HOH . K 7 HOH A 15 1024 1024 HOH HOH . K 7 HOH A 16 1025 1025 HOH HOH . K 7 HOH A 17 1026 1026 HOH HOH . K 7 HOH A 18 1027 1027 HOH HOH . K 7 HOH A 19 1028 1028 HOH HOH . K 7 HOH A 20 1029 1029 HOH HOH . K 7 HOH A 21 1030 1030 HOH HOH . K 7 HOH A 22 1031 1031 HOH HOH . K 7 HOH A 23 1032 1032 HOH HOH . K 7 HOH A 24 1033 1033 HOH HOH . K 7 HOH A 25 1034 1034 HOH HOH . K 7 HOH A 26 1035 1035 HOH HOH . K 7 HOH A 27 1036 1036 HOH HOH . K 7 HOH A 28 1037 1037 HOH HOH . K 7 HOH A 29 1038 1038 HOH HOH . K 7 HOH A 30 1039 1039 HOH HOH . K 7 HOH A 31 1040 1040 HOH HOH . K 7 HOH A 32 1041 1041 HOH HOH . K 7 HOH A 33 1042 1042 HOH HOH . K 7 HOH A 34 1043 1043 HOH HOH . K 7 HOH A 35 1044 1044 HOH HOH . K 7 HOH A 36 1045 1045 HOH HOH . K 7 HOH A 37 1046 1046 HOH HOH . K 7 HOH A 38 1047 1047 HOH HOH . K 7 HOH A 39 1048 1048 HOH HOH . K 7 HOH A 40 1049 1049 HOH HOH . K 7 HOH A 41 1050 1050 HOH HOH . K 7 HOH A 42 1051 1051 HOH HOH . K 7 HOH A 43 1052 1052 HOH HOH . K 7 HOH A 44 1053 1053 HOH HOH . K 7 HOH A 45 1054 1054 HOH HOH . K 7 HOH A 46 1055 1055 HOH HOH . K 7 HOH A 47 1056 1056 HOH HOH . K 7 HOH A 48 1057 1057 HOH HOH . K 7 HOH A 49 1058 1058 HOH HOH . K 7 HOH A 50 1059 1059 HOH HOH . K 7 HOH A 51 1060 1060 HOH HOH . K 7 HOH A 52 1061 1061 HOH HOH . K 7 HOH A 53 1062 1062 HOH HOH . K 7 HOH A 54 1063 1063 HOH HOH . K 7 HOH A 55 1064 1064 HOH HOH . K 7 HOH A 56 1065 1065 HOH HOH . K 7 HOH A 57 1066 1066 HOH HOH . K 7 HOH A 58 1067 1067 HOH HOH . K 7 HOH A 59 1068 1068 HOH HOH . K 7 HOH A 60 1069 1069 HOH HOH . K 7 HOH A 61 1070 1070 HOH HOH . K 7 HOH A 62 1071 1071 HOH HOH . K 7 HOH A 63 1072 1072 HOH HOH . K 7 HOH A 64 1073 1073 HOH HOH . K 7 HOH A 65 1074 1074 HOH HOH . K 7 HOH A 66 1075 1075 HOH HOH . K 7 HOH A 67 1076 1076 HOH HOH . K 7 HOH A 68 1077 1077 HOH HOH . K 7 HOH A 69 1078 1078 HOH HOH . K 7 HOH A 70 1079 1079 HOH HOH . K 7 HOH A 71 1080 1080 HOH HOH . K 7 HOH A 72 1081 1081 HOH HOH . K 7 HOH A 73 1082 1082 HOH HOH . K 7 HOH A 74 1083 1083 HOH HOH . K 7 HOH A 75 1084 1084 HOH HOH . K 7 HOH A 76 1085 1085 HOH HOH . K 7 HOH A 77 1086 1086 HOH HOH . K 7 HOH A 78 1087 1087 HOH HOH . K 7 HOH A 79 1088 1088 HOH HOH . K 7 HOH A 80 1089 1089 HOH HOH . K 7 HOH A 81 1090 1090 HOH HOH . K 7 HOH A 82 1091 1091 HOH HOH . K 7 HOH A 83 1092 1092 HOH HOH . K 7 HOH A 84 1093 1093 HOH HOH . K 7 HOH A 85 1094 1094 HOH HOH . K 7 HOH A 86 1095 1095 HOH HOH . K 7 HOH A 87 1096 1096 HOH HOH . K 7 HOH A 88 1097 1097 HOH HOH . K 7 HOH A 89 1098 1098 HOH HOH . K 7 HOH A 90 1099 1099 HOH HOH . K 7 HOH A 91 1100 1100 HOH HOH . K 7 HOH A 92 1101 1101 HOH HOH . K 7 HOH A 93 1102 1102 HOH HOH . K 7 HOH A 94 1103 1103 HOH HOH . K 7 HOH A 95 1104 1104 HOH HOH . K 7 HOH A 96 1105 1105 HOH HOH . K 7 HOH A 97 1106 1106 HOH HOH . K 7 HOH A 98 1107 1107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 6 41.241 -40.141 11.814 1 45.72 ? C1 GOL 1004 A 1 HETATM 2 O O1 GOL . . . J 6 40.608 -40.693 10.666 1 43.91 ? O1 GOL 1004 A 1 HETATM 3 C C2 GOL . . . J 6 40.389 -40.212 13.089 1 45.23 ? C2 GOL 1004 A 1 HETATM 4 O O2 GOL . . . J 6 41.118 -39.693 14.186 1 47.78 ? O2 GOL 1004 A 1 HETATM 5 C C3 GOL . . . J 6 39.122 -39.384 12.968 1 47.07 ? C3 GOL 1004 A 1 HETATM 6 O O3 GOL . . . J 6 38.297 -39.654 14.09 1 46.85 ? O3 GOL 1004 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #