data_2P3O # _model_server_result.job_id tQ9Yi9-Qq7_V8mbocS4eLQ _model_server_result.datetime_utc '2024-11-06 03:11:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1001}' # _entry.id 2P3O # _exptl.entry_id 2P3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P3O _cell.length_a 111.56 _cell.length_b 111.56 _cell.length_c 56.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 383 n n N HN1 SAH sing 384 n n N HN2 SAH sing 385 n n CA CB SAH sing 386 n n CA C SAH sing 387 n n CA HA SAH sing 388 n n CB CG SAH sing 389 n n CB HB1 SAH sing 390 n n CB HB2 SAH sing 391 n n CG SD SAH sing 392 n n CG HG1 SAH sing 393 n n CG HG2 SAH sing 394 n n SD C5' SAH sing 395 n n C O SAH doub 396 n n C OXT SAH sing 397 n n OXT HXT SAH sing 398 n n C5' C4' SAH sing 399 n n C5' "H5'1" SAH sing 400 n n C5' "H5'2" SAH sing 401 n n C4' O4' SAH sing 402 n n C4' C3' SAH sing 403 n n C4' H4' SAH sing 404 n n O4' C1' SAH sing 405 n n C3' O3' SAH sing 406 n n C3' C2' SAH sing 407 n n C3' H3' SAH sing 408 n n O3' HO3' SAH sing 409 n n C2' O2' SAH sing 410 n n C2' C1' SAH sing 411 n n C2' H2' SAH sing 412 n n O2' HO2' SAH sing 413 n n C1' N9 SAH sing 414 n n C1' H1' SAH sing 415 n n N9 C8 SAH sing 416 n y N9 C4 SAH sing 417 n y C8 N7 SAH doub 418 n y C8 H8 SAH sing 419 n n N7 C5 SAH sing 420 n y C5 C6 SAH sing 421 n y C5 C4 SAH doub 422 n y C6 N6 SAH sing 423 n n C6 N1 SAH doub 424 n y N6 HN61 SAH sing 425 n n N6 HN62 SAH sing 426 n n N1 C2 SAH sing 427 n y C2 N3 SAH doub 428 n y C2 H2 SAH sing 429 n n N3 C4 SAH sing 430 n y # _atom_sites.entry_id 2P3O _atom_sites.fract_transf_matrix[1][1] 0.008964 _atom_sites.fract_transf_matrix[1][2] 0.005175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1002 1002 SO4 SO4 . C 2 SO4 A 1 1003 1003 SO4 SO4 . D 2 SO4 A 1 1004 1004 SO4 SO4 . E 2 SO4 A 1 1005 1005 SO4 SO4 . F 2 SO4 A 1 1006 1006 SO4 SO4 . G 2 SO4 A 1 1007 1007 SO4 SO4 . H 2 SO4 A 1 1008 1008 SO4 SO4 . I 2 SO4 A 1 1009 1009 SO4 SO4 . J 2 SO4 A 1 1010 1010 SO4 SO4 . K 3 SAH A 1 1001 1001 SAH SAH . L 4 CIT A 1 1011 1011 CIT CIT . M 5 GTA A 1 1012 1012 GTA GTA . N 6 HOH A 1 1013 1 HOH HOH . N 6 HOH A 2 1014 2 HOH HOH . N 6 HOH A 3 1015 3 HOH HOH . N 6 HOH A 4 1016 4 HOH HOH . N 6 HOH A 5 1017 5 HOH HOH . N 6 HOH A 6 1018 6 HOH HOH . N 6 HOH A 7 1019 7 HOH HOH . N 6 HOH A 8 1020 8 HOH HOH . N 6 HOH A 9 1021 9 HOH HOH . N 6 HOH A 10 1022 10 HOH HOH . N 6 HOH A 11 1023 11 HOH HOH . N 6 HOH A 12 1024 12 HOH HOH . N 6 HOH A 13 1025 13 HOH HOH . N 6 HOH A 14 1026 14 HOH HOH . N 6 HOH A 15 1027 15 HOH HOH . N 6 HOH A 16 1028 16 HOH HOH . N 6 HOH A 17 1029 17 HOH HOH . N 6 HOH A 18 1030 18 HOH HOH . N 6 HOH A 19 1031 19 HOH HOH . N 6 HOH A 20 1032 20 HOH HOH . N 6 HOH A 21 1033 21 HOH HOH . N 6 HOH A 22 1034 22 HOH HOH . N 6 HOH A 23 1035 23 HOH HOH . N 6 HOH A 24 1036 24 HOH HOH . N 6 HOH A 25 1037 25 HOH HOH . N 6 HOH A 26 1038 26 HOH HOH . N 6 HOH A 27 1039 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . K 3 10.057 45.298 11.31 1 72.12 ? N SAH 1001 A 1 HETATM 2 C CA SAH . . . K 3 11.403 45.891 11.6 1 72.27 ? CA SAH 1001 A 1 HETATM 3 C CB SAH . . . K 3 12.236 46.002 10.341 1 72.07 ? CB SAH 1001 A 1 HETATM 4 C CG SAH . . . K 3 13.306 44.916 10.367 1 73.95 ? CG SAH 1001 A 1 HETATM 5 S SD SAH . . . K 3 13.916 44.561 8.699 1 80.13 ? SD SAH 1001 A 1 HETATM 6 C C SAH . . . K 3 11.307 47.216 12.339 1 72.1 ? C SAH 1001 A 1 HETATM 7 O O SAH . . . K 3 10.2 47.627 12.659 1 72.24 ? O SAH 1001 A 1 HETATM 8 O OXT SAH . . . K 3 12.293 47.88 12.664 1 71.86 ? OXT SAH 1001 A 1 HETATM 9 C C5' SAH . . . K 3 13.958 42.749 8.769 1 73.91 ? C5' SAH 1001 A 1 HETATM 10 C C4' SAH . . . K 3 15.213 42.267 9.484 1 71.21 ? C4' SAH 1001 A 1 HETATM 11 O O4' SAH . . . K 3 15.255 40.859 9.482 1 70.39 ? O4' SAH 1001 A 1 HETATM 12 C C3' SAH . . . K 3 16.49 42.776 8.834 1 69.73 ? C3' SAH 1001 A 1 HETATM 13 O O3' SAH . . . K 3 17.165 43.66 9.707 1 68.25 ? O3' SAH 1001 A 1 HETATM 14 C C2' SAH . . . K 3 17.308 41.534 8.566 1 69.14 ? C2' SAH 1001 A 1 HETATM 15 O O2' SAH . . . K 3 18.644 41.661 8.992 1 68.43 ? O2' SAH 1001 A 1 HETATM 16 C C1' SAH . . . K 3 16.596 40.438 9.344 1 69.02 ? C1' SAH 1001 A 1 HETATM 17 N N9 SAH . . . K 3 16.761 39.144 8.636 1 68.57 ? N9 SAH 1001 A 1 HETATM 18 C C8 SAH . . . K 3 16.866 38.946 7.284 1 67.71 ? C8 SAH 1001 A 1 HETATM 19 N N7 SAH . . . K 3 17.037 37.63 7.043 1 67.61 ? N7 SAH 1001 A 1 HETATM 20 C C5 SAH . . . K 3 17.036 36.974 8.23 1 68.09 ? C5 SAH 1001 A 1 HETATM 21 C C6 SAH . . . K 3 17.167 35.623 8.575 1 67.68 ? C6 SAH 1001 A 1 HETATM 22 N N6 SAH . . . K 3 17.343 34.693 7.654 1 67.66 ? N6 SAH 1001 A 1 HETATM 23 N N1 SAH . . . K 3 17.129 35.247 9.898 1 68.16 ? N1 SAH 1001 A 1 HETATM 24 C C2 SAH . . . K 3 16.962 36.213 10.881 1 67.94 ? C2 SAH 1001 A 1 HETATM 25 N N3 SAH . . . K 3 16.829 37.544 10.535 1 67.22 ? N3 SAH 1001 A 1 HETATM 26 C C4 SAH . . . K 3 16.865 37.92 9.236 1 67.68 ? C4 SAH 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #