data_2P3O # _model_server_result.job_id kjnIpZKxVBCCz7aX4BtvXw _model_server_result.datetime_utc '2024-11-06 02:55:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p3o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1012}' # _entry.id 2P3O # _exptl.entry_id 2P3O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.441 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P3O _cell.length_a 111.56 _cell.length_b 111.56 _cell.length_c 56.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P3O _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O17 P3 1' _chem_comp.formula_weight 787.441 _chem_comp.id GTA _chem_comp.mon_nstd_flag . _chem_comp.name "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-METHYL-GPPPA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 GTA sing 149 n n N2 HN21 GTA sing 150 n n N2 HN22 GTA sing 151 n n O6 C6 GTA doub 152 n n C6 C5 GTA sing 153 n n C6 N1 GTA sing 154 n n C5 N7 GTA sing 155 n y C5 C4 GTA doub 156 n y N7 C7 GTA sing 157 n n N7 C8 GTA doub 158 n y C7 H71 GTA sing 159 n n C7 H72 GTA sing 160 n n C7 H73 GTA sing 161 n n C8 N9 GTA sing 162 n y C8 H8 GTA sing 163 n n N9 C4 GTA sing 164 n y N9 C1A GTA sing 165 n n C4 N3 GTA sing 166 n n N3 C2 GTA doub 167 n n C2 N1 GTA sing 168 n n N1 HN1 GTA sing 169 n n O3A C3A GTA sing 170 n n O3A HO3A GTA sing 171 n n C1A C2A GTA sing 172 n n C1A O4A GTA sing 173 n n C1A H1A GTA sing 174 n n C2A C3A GTA sing 175 n n C2A O2A GTA sing 176 n n C2A H2A GTA sing 177 n n C3A C4A GTA sing 178 n n C3A H3A GTA sing 179 n n C4A C5A GTA sing 180 n n C4A O4A GTA sing 181 n n C4A H4A GTA sing 182 n n C5A O15 GTA sing 183 n n C5A H5A1 GTA sing 184 n n C5A H5A2 GTA sing 185 n n O2A HO2A GTA sing 186 n n P1 O11 GTA doub 187 n n P1 O12 GTA sing 188 n n P1 O13 GTA sing 189 n n P1 O15 GTA sing 190 n n O12 H122 GTA sing 191 n n O13 P2 GTA sing 192 n n P2 O22 GTA sing 193 n n P2 O21 GTA doub 194 n n P2 O23 GTA sing 195 n n O22 H222 GTA sing 196 n n O23 P3 GTA sing 197 n n P3 O32 GTA sing 198 n n P3 O31 GTA doub 199 n n P3 O33 GTA sing 200 n n O32 H322 GTA sing 201 n n O33 C5B GTA sing 202 n n C5B C4B GTA sing 203 n n C5B H5B1 GTA sing 204 n n C5B H5B2 GTA sing 205 n n C4B O4B GTA sing 206 n n C4B C3B GTA sing 207 n n C4B H4B GTA sing 208 n n O4B C1B GTA sing 209 n n C3B O3B GTA sing 210 n n C3B C2B GTA sing 211 n n C3B H3B GTA sing 212 n n O3B HO3B GTA sing 213 n n C2B O2B GTA sing 214 n n C2B C1B GTA sing 215 n n C2B H2B GTA sing 216 n n O2B HO2B GTA sing 217 n n C1B N9C GTA sing 218 n n C1B H1B GTA sing 219 n n N9C C8C GTA sing 220 n y N9C C4C GTA sing 221 n y C8C N7C GTA doub 222 n y C8C H8C GTA sing 223 n n N7C C5C GTA sing 224 n y C5C C6C GTA doub 225 n y C5C C4C GTA sing 226 n y C6C N6C GTA sing 227 n n C6C N1C GTA sing 228 n y N6C HN61 GTA sing 229 n n N6C HN62 GTA sing 230 n n N1C C2C GTA doub 231 n y C2C N3C GTA sing 232 n y C2C H2C GTA sing 233 n n N3C C4C GTA doub 234 n y # _atom_sites.entry_id 2P3O _atom_sites.fract_transf_matrix[1][1] 0.008964 _atom_sites.fract_transf_matrix[1][2] 0.005175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1002 1002 SO4 SO4 . C 2 SO4 A 1 1003 1003 SO4 SO4 . D 2 SO4 A 1 1004 1004 SO4 SO4 . E 2 SO4 A 1 1005 1005 SO4 SO4 . F 2 SO4 A 1 1006 1006 SO4 SO4 . G 2 SO4 A 1 1007 1007 SO4 SO4 . H 2 SO4 A 1 1008 1008 SO4 SO4 . I 2 SO4 A 1 1009 1009 SO4 SO4 . J 2 SO4 A 1 1010 1010 SO4 SO4 . K 3 SAH A 1 1001 1001 SAH SAH . L 4 CIT A 1 1011 1011 CIT CIT . M 5 GTA A 1 1012 1012 GTA GTA . N 6 HOH A 1 1013 1 HOH HOH . N 6 HOH A 2 1014 2 HOH HOH . N 6 HOH A 3 1015 3 HOH HOH . N 6 HOH A 4 1016 4 HOH HOH . N 6 HOH A 5 1017 5 HOH HOH . N 6 HOH A 6 1018 6 HOH HOH . N 6 HOH A 7 1019 7 HOH HOH . N 6 HOH A 8 1020 8 HOH HOH . N 6 HOH A 9 1021 9 HOH HOH . N 6 HOH A 10 1022 10 HOH HOH . N 6 HOH A 11 1023 11 HOH HOH . N 6 HOH A 12 1024 12 HOH HOH . N 6 HOH A 13 1025 13 HOH HOH . N 6 HOH A 14 1026 14 HOH HOH . N 6 HOH A 15 1027 15 HOH HOH . N 6 HOH A 16 1028 16 HOH HOH . N 6 HOH A 17 1029 17 HOH HOH . N 6 HOH A 18 1030 18 HOH HOH . N 6 HOH A 19 1031 19 HOH HOH . N 6 HOH A 20 1032 20 HOH HOH . N 6 HOH A 21 1033 21 HOH HOH . N 6 HOH A 22 1034 22 HOH HOH . N 6 HOH A 23 1035 23 HOH HOH . N 6 HOH A 24 1036 24 HOH HOH . N 6 HOH A 25 1037 25 HOH HOH . N 6 HOH A 26 1038 26 HOH HOH . N 6 HOH A 27 1039 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 GTA . . . M 5 16.031 52.742 -11.809 1 56.16 ? N2 GTA 1012 A 1 HETATM 2 O O6 GTA . . . M 5 19.026 54.184 -8.555 1 57.71 ? O6 GTA 1012 A 1 HETATM 3 C C6 GTA . . . M 5 18.118 53.393 -8.927 1 57.36 ? C6 GTA 1012 A 1 HETATM 4 C C5 GTA . . . M 5 17.646 52.4 -8.042 1 56.68 ? C5 GTA 1012 A 1 HETATM 5 N N7 GTA . . . M 5 17.95 52.031 -6.766 1 53.34 ? N7 GTA 1012 A 1 HETATM 6 C C7 GTA . . . M 5 18.815 52.583 -5.728 1 20 ? C7 GTA 1012 A 1 HETATM 7 C C8 GTA . . . M 5 17.127 50.987 -6.489 1 56.27 ? C8 GTA 1012 A 1 HETATM 8 N N9 GTA . . . M 5 16.313 50.704 -7.538 1 56.5 ? N9 GTA 1012 A 1 HETATM 9 C C4 GTA . . . M 5 16.63 51.566 -8.496 1 55.29 ? C4 GTA 1012 A 1 HETATM 10 N N3 GTA . . . M 5 16.131 51.721 -9.735 1 54.86 ? N3 GTA 1012 A 1 HETATM 11 C C2 GTA . . . M 5 16.594 52.664 -10.574 1 56.28 ? C2 GTA 1012 A 1 HETATM 12 N N1 GTA . . . M 5 17.586 53.504 -10.181 1 56.5 ? N1 GTA 1012 A 1 HETATM 13 O O3A GTA . . . M 5 14.83 46.279 -6.996 1 62.92 ? O3A GTA 1012 A 1 HETATM 14 C C1A GTA . . . M 5 15.219 49.684 -7.706 1 57.21 ? C1A GTA 1012 A 1 HETATM 15 C C2A GTA . . . M 5 15.694 48.26 -7.891 1 59.73 ? C2A GTA 1012 A 1 HETATM 16 C C3A GTA . . . M 5 15.348 47.548 -6.619 1 60.1 ? C3A GTA 1012 A 1 HETATM 17 C C4A GTA . . . M 5 14.24 48.368 -6.001 1 60.88 ? C4A GTA 1012 A 1 HETATM 18 C C5A GTA . . . M 5 14.459 48.494 -4.507 1 63.85 ? C5A GTA 1012 A 1 HETATM 19 O O4A GTA . . . M 5 14.277 49.663 -6.631 1 57.67 ? O4A GTA 1012 A 1 HETATM 20 O O2A GTA . . . M 5 14.888 47.7 -8.941 1 60.92 ? O2A GTA 1012 A 1 HETATM 21 P P1 GTA . . . M 5 15.654 50.313 -2.95 1 75.91 ? P1 GTA 1012 A 1 HETATM 22 O O11 GTA . . . M 5 14.485 49.982 -2.054 1 75.67 ? O11 GTA 1012 A 1 HETATM 23 O O12 GTA . . . M 5 16.075 51.756 -3.147 1 75.59 ? O12 GTA 1012 A 1 HETATM 24 O O13 GTA . . . M 5 16.962 49.501 -2.508 1 78.22 ? O13 GTA 1012 A 1 HETATM 25 O O15 GTA . . . M 5 15.423 49.535 -4.343 1 71.36 ? O15 GTA 1012 A 1 HETATM 26 P P2 GTA . . . M 5 16.999 48.385 -1.337 1 78.28 ? P2 GTA 1012 A 1 HETATM 27 O O22 GTA . . . M 5 17.228 47.009 -1.95 1 77.28 ? O22 GTA 1012 A 1 HETATM 28 O O21 GTA . . . M 5 15.84 48.691 -0.417 1 76.02 ? O21 GTA 1012 A 1 HETATM 29 O O23 GTA . . . M 5 18.396 48.748 -0.594 1 79.25 ? O23 GTA 1012 A 1 HETATM 30 P P3 GTA . . . M 5 19.68 49.454 -1.31 1 81.45 ? P3 GTA 1012 A 1 HETATM 31 O O32 GTA . . . M 5 20.863 49.221 -0.388 1 82.65 ? O32 GTA 1012 A 1 HETATM 32 O O31 GTA . . . M 5 19.34 50.894 -1.736 1 80.95 ? O31 GTA 1012 A 1 HETATM 33 O O33 GTA . . . M 5 19.962 48.543 -2.61 1 78.19 ? O33 GTA 1012 A 1 HETATM 34 C C5B GTA . . . M 5 19.931 49.173 -3.873 1 75.84 ? C5B GTA 1012 A 1 HETATM 35 C C4B GTA . . . M 5 19.643 48.088 -4.872 1 74.63 ? C4B GTA 1012 A 1 HETATM 36 O O4B GTA . . . M 5 19.207 48.707 -6.086 1 74.17 ? O4B GTA 1012 A 1 HETATM 37 C C3B GTA . . . M 5 20.934 47.339 -5.154 1 74.42 ? C3B GTA 1012 A 1 HETATM 38 O O3B GTA . . . M 5 20.672 45.929 -5.245 1 73.82 ? O3B GTA 1012 A 1 HETATM 39 C C2B GTA . . . M 5 21.382 47.906 -6.486 1 74.2 ? C2B GTA 1012 A 1 HETATM 40 O O2B GTA . . . M 5 22.121 46.955 -7.281 1 77.17 ? O2B GTA 1012 A 1 HETATM 41 C C1B GTA . . . M 5 20.061 48.292 -7.141 1 71.97 ? C1B GTA 1012 A 1 HETATM 42 N N9C GTA . . . M 5 20.26 49.416 -8.061 1 70.87 ? N9C GTA 1012 A 1 HETATM 43 C C8C GTA . . . M 5 21.057 50.482 -7.852 1 69.66 ? C8C GTA 1012 A 1 HETATM 44 N N7C GTA . . . M 5 20.989 51.288 -8.915 1 68.43 ? N7C GTA 1012 A 1 HETATM 45 C C5C GTA . . . M 5 20.153 50.703 -9.769 1 69.98 ? C5C GTA 1012 A 1 HETATM 46 C C6C GTA . . . M 5 19.754 51.154 -11.015 1 70.44 ? C6C GTA 1012 A 1 HETATM 47 N N6C GTA . . . M 5 20.201 52.236 -11.44 1 70.68 ? N6C GTA 1012 A 1 HETATM 48 N N1C GTA . . . M 5 18.895 50.404 -11.73 1 69.82 ? N1C GTA 1012 A 1 HETATM 49 C C2C GTA . . . M 5 18.436 49.243 -11.213 1 70.26 ? C2C GTA 1012 A 1 HETATM 50 N N3C GTA . . . M 5 18.809 48.785 -9.98 1 69.73 ? N3C GTA 1012 A 1 HETATM 51 C C4C GTA . . . M 5 19.684 49.521 -9.25 1 70.1 ? C4C GTA 1012 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #