data_2P3Q # _model_server_result.job_id O2aAhN93nySHl1khOBQ-2A _model_server_result.datetime_utc '2024-11-27 11:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1001}' # _entry.id 2P3Q # _exptl.entry_id 2P3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P3Q _cell.length_a 111.502 _cell.length_b 111.502 _cell.length_c 56.534 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 193.127129 37.689333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 360 n n N HN1 SAH sing 361 n n N HN2 SAH sing 362 n n CA CB SAH sing 363 n n CA C SAH sing 364 n n CA HA SAH sing 365 n n CB CG SAH sing 366 n n CB HB1 SAH sing 367 n n CB HB2 SAH sing 368 n n CG SD SAH sing 369 n n CG HG1 SAH sing 370 n n CG HG2 SAH sing 371 n n SD C5' SAH sing 372 n n C O SAH doub 373 n n C OXT SAH sing 374 n n OXT HXT SAH sing 375 n n C5' C4' SAH sing 376 n n C5' "H5'1" SAH sing 377 n n C5' "H5'2" SAH sing 378 n n C4' O4' SAH sing 379 n n C4' C3' SAH sing 380 n n C4' H4' SAH sing 381 n n O4' C1' SAH sing 382 n n C3' O3' SAH sing 383 n n C3' C2' SAH sing 384 n n C3' H3' SAH sing 385 n n O3' HO3' SAH sing 386 n n C2' O2' SAH sing 387 n n C2' C1' SAH sing 388 n n C2' H2' SAH sing 389 n n O2' HO2' SAH sing 390 n n C1' N9 SAH sing 391 n n C1' H1' SAH sing 392 n n N9 C8 SAH sing 393 n y N9 C4 SAH sing 394 n y C8 N7 SAH doub 395 n y C8 H8 SAH sing 396 n n N7 C5 SAH sing 397 n y C5 C6 SAH sing 398 n y C5 C4 SAH doub 399 n y C6 N6 SAH sing 400 n n C6 N1 SAH doub 401 n y N6 HN61 SAH sing 402 n n N6 HN62 SAH sing 403 n n N1 C2 SAH sing 404 n y C2 N3 SAH doub 405 n y C2 H2 SAH sing 406 n n N3 C4 SAH sing 407 n y # _atom_sites.entry_id 2P3Q _atom_sites.fract_transf_matrix[1][1] 0.008968 _atom_sites.fract_transf_matrix[1][2] 0.005178 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1002 1002 SO4 SO4 . C 2 SO4 A 1 1003 1003 SO4 SO4 . D 2 SO4 A 1 1004 1004 SO4 SO4 . E 2 SO4 A 1 1005 1005 SO4 SO4 . F 2 SO4 A 1 1006 1006 SO4 SO4 . G 2 SO4 A 1 1007 1007 SO4 SO4 . H 3 GP3 A 1 1009 1009 GP3 GP3 . I 4 SAH A 1 1001 1001 SAH SAH . J 5 HOH A 1 1010 1 HOH HOH . J 5 HOH A 2 1011 2 HOH HOH . J 5 HOH A 3 1012 3 HOH HOH . J 5 HOH A 4 1013 4 HOH HOH . J 5 HOH A 5 1014 5 HOH HOH . J 5 HOH A 6 1015 6 HOH HOH . J 5 HOH A 7 1016 7 HOH HOH . J 5 HOH A 8 1017 8 HOH HOH . J 5 HOH A 9 1018 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 4 -11.317 82.516 7.649 1 70.68 ? N SAH 1001 A 1 HETATM 2 C CA SAH . . . I 4 -10.069 83.305 7.686 1 71.53 ? CA SAH 1001 A 1 HETATM 3 C CB SAH . . . I 4 -9.645 83.662 9.101 1 71.9 ? CB SAH 1001 A 1 HETATM 4 C CG SAH . . . I 4 -9.437 85.167 9.248 1 75.89 ? CG SAH 1001 A 1 HETATM 5 S SD SAH . . . I 4 -9.633 85.675 10.974 1 84.72 ? SD SAH 1001 A 1 HETATM 6 C C SAH . . . I 4 -8.961 82.524 7.044 1 70.9 ? C SAH 1001 A 1 HETATM 7 O O SAH . . . I 4 -9.145 81.313 6.93 1 70.68 ? O SAH 1001 A 1 HETATM 8 O OXT SAH . . . I 4 -7.917 83.082 6.64 1 70.66 ? OXT SAH 1001 A 1 HETATM 9 C C5' SAH . . . I 4 -11.109 86.736 10.787 1 83.42 ? C5' SAH 1001 A 1 HETATM 10 C C4' SAH . . . I 4 -10.919 88.132 10.175 1 84.34 ? C4' SAH 1001 A 1 HETATM 11 O O4' SAH . . . I 4 -12.054 88.945 10.389 1 85.51 ? O4' SAH 1001 A 1 HETATM 12 C C3' SAH . . . I 4 -9.75 88.943 10.719 1 83.71 ? C3' SAH 1001 A 1 HETATM 13 O O3' SAH . . . I 4 -8.739 88.864 9.744 1 82.41 ? O3' SAH 1001 A 1 HETATM 14 C C2' SAH . . . I 4 -10.264 90.365 10.95 1 83.59 ? C2' SAH 1001 A 1 HETATM 15 O O2' SAH . . . I 4 -9.603 91.37 10.228 1 81.97 ? O2' SAH 1001 A 1 HETATM 16 C C1' SAH . . . I 4 -11.639 90.305 10.348 1 85.81 ? C1' SAH 1001 A 1 HETATM 17 N N9 SAH . . . I 4 -12.636 91.11 11.063 1 88.78 ? N9 SAH 1001 A 1 HETATM 18 C C8 SAH . . . I 4 -12.837 91.22 12.424 1 89.15 ? C8 SAH 1001 A 1 HETATM 19 N N7 SAH . . . I 4 -13.902 92.036 12.616 1 88.6 ? N7 SAH 1001 A 1 HETATM 20 C C5 SAH . . . I 4 -14.374 92.437 11.412 1 87.71 ? C5 SAH 1001 A 1 HETATM 21 C C6 SAH . . . I 4 -15.427 93.259 11.029 1 88.15 ? C6 SAH 1001 A 1 HETATM 22 N N6 SAH . . . I 4 -16.191 93.821 11.962 1 89.56 ? N6 SAH 1001 A 1 HETATM 23 N N1 SAH . . . I 4 -15.692 93.489 9.682 1 88.18 ? N1 SAH 1001 A 1 HETATM 24 C C2 SAH . . . I 4 -14.894 92.906 8.72 1 87.91 ? C2 SAH 1001 A 1 HETATM 25 N N3 SAH . . . I 4 -13.845 92.087 9.109 1 88.15 ? N3 SAH 1001 A 1 HETATM 26 C C4 SAH . . . I 4 -13.594 91.857 10.426 1 88.37 ? C4 SAH 1001 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #