data_2P3Q # _model_server_result.job_id y8iWsEZoEmeAC6hXrbvoog _model_server_result.datetime_utc '2024-11-23 19:06:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1009}' # _entry.id 2P3Q # _exptl.entry_id 2P3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 788.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "DIGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P3Q _cell.length_a 111.502 _cell.length_b 111.502 _cell.length_c 56.534 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 193.127129 37.689333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H27 N10 O18 P3' _chem_comp.formula_weight 788.406 _chem_comp.id GP3 _chem_comp.mon_nstd_flag . _chem_comp.name "DIGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9A C8A GP3 sing 129 n y N9A C4A GP3 sing 130 n y N9A C1D GP3 sing 131 n n C8A N7A GP3 doub 132 n y C8A H8A GP3 sing 133 n n N7A C5A GP3 sing 134 n y C5A C6A GP3 sing 135 n n C5A C4A GP3 doub 136 n y C6A O6A GP3 doub 137 n n C6A N1A GP3 sing 138 n n N1A C2A GP3 sing 139 n n N1A H1A GP3 sing 140 n n C2A N2A GP3 sing 141 n n C2A N3A GP3 doub 142 n n N2A H21A GP3 sing 143 n n N2A H22A GP3 sing 144 n n N3A C4A GP3 sing 145 n n O5D C5D GP3 sing 146 n n O5D PA GP3 sing 147 n n C5D C4D GP3 sing 148 n n C5D H51A GP3 sing 149 n n C5D H52A GP3 sing 150 n n C4D O4D GP3 sing 151 n n C4D C3D GP3 sing 152 n n C4D H4D GP3 sing 153 n n O4D C1D GP3 sing 154 n n C3D O3D GP3 sing 155 n n C3D C2D GP3 sing 156 n n C3D H3D GP3 sing 157 n n O3D HO3A GP3 sing 158 n n C2D O2D GP3 sing 159 n n C2D C1D GP3 sing 160 n n C2D H2D GP3 sing 161 n n O2D HO2A GP3 sing 162 n n C1D H1D GP3 sing 163 n n PA O1A GP3 doub 164 n n PA O2A GP3 sing 165 n n PA O3A GP3 sing 166 n n O2A HOA2 GP3 sing 167 n n O3A PB GP3 sing 168 n n PB O1B GP3 doub 169 n n PB O2B GP3 sing 170 n n PB O3B GP3 sing 171 n n O2B HOB2 GP3 sing 172 n n O3B PG GP3 sing 173 n n PG O1G GP3 doub 174 n n PG O2G GP3 sing 175 n n PG O5E GP3 sing 176 n n O2G HOG2 GP3 sing 177 n n O5E C5E GP3 sing 178 n n C5E C4E GP3 sing 179 n n C5E H51B GP3 sing 180 n n C5E H52B GP3 sing 181 n n C4E O4E GP3 sing 182 n n C4E C3E GP3 sing 183 n n C4E H4E GP3 sing 184 n n O4E C1E GP3 sing 185 n n C3E O3E GP3 sing 186 n n C3E C2E GP3 sing 187 n n C3E H3E GP3 sing 188 n n O3E HO3B GP3 sing 189 n n C2E O2E GP3 sing 190 n n C2E C1E GP3 sing 191 n n C2E H2E GP3 sing 192 n n O2E HO2B GP3 sing 193 n n C1E N9B GP3 sing 194 n n C1E H1E GP3 sing 195 n n N9B C8B GP3 sing 196 n y N9B C4B GP3 sing 197 n y C8B N7B GP3 doub 198 n y C8B H8B GP3 sing 199 n n N7B C5B GP3 sing 200 n y C5B C6B GP3 sing 201 n n C5B C4B GP3 doub 202 n y C6B O6B GP3 doub 203 n n C6B N1B GP3 sing 204 n n N1B C2B GP3 sing 205 n n N1B H1B GP3 sing 206 n n C2B N2B GP3 sing 207 n n C2B N3B GP3 doub 208 n n N2B H21B GP3 sing 209 n n N2B H22B GP3 sing 210 n n N3B C4B GP3 sing 211 n n # _atom_sites.entry_id 2P3Q _atom_sites.fract_transf_matrix[1][1] 0.008968 _atom_sites.fract_transf_matrix[1][2] 0.005178 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1002 1002 SO4 SO4 . C 2 SO4 A 1 1003 1003 SO4 SO4 . D 2 SO4 A 1 1004 1004 SO4 SO4 . E 2 SO4 A 1 1005 1005 SO4 SO4 . F 2 SO4 A 1 1006 1006 SO4 SO4 . G 2 SO4 A 1 1007 1007 SO4 SO4 . H 3 GP3 A 1 1009 1009 GP3 GP3 . I 4 SAH A 1 1001 1001 SAH SAH . J 5 HOH A 1 1010 1 HOH HOH . J 5 HOH A 2 1011 2 HOH HOH . J 5 HOH A 3 1012 3 HOH HOH . J 5 HOH A 4 1013 4 HOH HOH . J 5 HOH A 5 1014 5 HOH HOH . J 5 HOH A 6 1015 6 HOH HOH . J 5 HOH A 7 1016 7 HOH HOH . J 5 HOH A 8 1017 8 HOH HOH . J 5 HOH A 9 1018 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9A GP3 . . . H 3 -3.015 85.074 27.034 1 107.18 ? N9A GP3 1009 A 1 HETATM 2 C C8A GP3 . . . H 3 -2.474 85.714 25.975 1 106.97 ? C8A GP3 1009 A 1 HETATM 3 N N7A GP3 . . . H 3 -1.14 85.84 26.148 1 106.76 ? N7A GP3 1009 A 1 HETATM 4 C C5A GP3 . . . H 3 -0.849 85.263 27.322 1 107.29 ? C5A GP3 1009 A 1 HETATM 5 C C6A GP3 . . . H 3 0.382 85.119 27.978 1 106.53 ? C6A GP3 1009 A 1 HETATM 6 O O6A GP3 . . . H 3 1.44 85.562 27.474 1 105.14 ? O6A GP3 1009 A 1 HETATM 7 N N1A GP3 . . . H 3 0.401 84.484 29.181 1 106.5 ? N1A GP3 1009 A 1 HETATM 8 C C2A GP3 . . . H 3 -0.732 83.989 29.747 1 106.47 ? C2A GP3 1009 A 1 HETATM 9 N N2A GP3 . . . H 3 -0.691 83.346 30.951 1 105.35 ? N2A GP3 1009 A 1 HETATM 10 N N3A GP3 . . . H 3 -1.934 84.134 29.11 1 107.45 ? N3A GP3 1009 A 1 HETATM 11 C C4A GP3 . . . H 3 -2.015 84.771 27.889 1 107.99 ? C4A GP3 1009 A 1 HETATM 12 O O5D GP3 . . . H 3 -4.265 84.091 23.454 1 109.96 ? O5D GP3 1009 A 1 HETATM 13 C C5D GP3 . . . H 3 -5.64 84.174 23.842 1 108.46 ? C5D GP3 1009 A 1 HETATM 14 C C4D GP3 . . . H 3 -5.828 84.38 25.348 1 107.3 ? C4D GP3 1009 A 1 HETATM 15 O O4D GP3 . . . H 3 -4.77 83.819 26.127 1 107.25 ? O4D GP3 1009 A 1 HETATM 16 C C3D GP3 . . . H 3 -5.853 85.829 25.802 1 107.3 ? C3D GP3 1009 A 1 HETATM 17 O O3D GP3 . . . H 3 -7.133 86.427 25.576 1 108.2 ? O3D GP3 1009 A 1 HETATM 18 C C2D GP3 . . . H 3 -5.493 85.706 27.275 1 106.55 ? C2D GP3 1009 A 1 HETATM 19 O O2D GP3 . . . H 3 -6.545 85.084 28.04 1 103.31 ? O2D GP3 1009 A 1 HETATM 20 C C1D GP3 . . . H 3 -4.427 84.653 27.245 1 106.37 ? C1D GP3 1009 A 1 HETATM 21 P PA GP3 . . . H 3 -3.792 84.466 21.956 1 111.22 ? PA GP3 1009 A 1 HETATM 22 O O1A GP3 . . . H 3 -3.814 85.986 21.76 1 108.79 ? O1A GP3 1009 A 1 HETATM 23 O O2A GP3 . . . H 3 -2.538 83.631 21.74 1 108.64 ? O2A GP3 1009 A 1 HETATM 24 O O3A GP3 . . . H 3 -5.017 83.866 21.078 1 110.49 ? O3A GP3 1009 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #