data_2P40 # _model_server_result.job_id S6REqn0U7mOI8qSPsWSZdg _model_server_result.datetime_utc '2024-11-08 11:36:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":308}' # _entry.id 2P40 # _exptl.entry_id 2P40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 803.44 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P40 _cell.length_a 114.725 _cell.length_b 114.725 _cell.length_c 56.426 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O18 P3 1' _chem_comp.formula_weight 803.44 _chem_comp.id GTG _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MRNA CAP ANALOG N7-METHYL GPPPG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A GTG doub 129 n n PA O2A GTG sing 130 n n PA O3A GTG sing 131 n n PA O5D GTG sing 132 n n O2A HOA2 GTG sing 133 n n O3A PB GTG sing 134 n n PB O1B GTG doub 135 n n PB O2B GTG sing 136 n n PB O3B GTG sing 137 n n O2B HOB2 GTG sing 138 n n O3B PG GTG sing 139 n n N9A C8A GTG sing 140 n y N9A C4A GTG sing 141 n y N9A C1D GTG sing 142 n n C8A N7A GTG doub 143 n y C8A H8 GTG sing 144 n n N7A C7X GTG sing 145 n n N7A C5A GTG sing 146 n y C7X HC71 GTG sing 147 n n C7X HC72 GTG sing 148 n n C7X HC73 GTG sing 149 n n C5A C6A GTG sing 150 n n C5A C4A GTG doub 151 n y C6A O6A GTG doub 152 n n C6A N1A GTG sing 153 n n N1A C2A GTG sing 154 n n N1A HN1 GTG sing 155 n n C2A N2A GTG sing 156 n n C2A N3A GTG doub 157 n n N2A HN21 GTG sing 158 n n N2A HN22 GTG sing 159 n n N3A C4A GTG sing 160 n n O5D C5D GTG sing 161 n n C5D C4D GTG sing 162 n n C5D "H5'1" GTG sing 163 n n C5D "H5'2" GTG sing 164 n n C4D O4D GTG sing 165 n n C4D C3D GTG sing 166 n n C4D H4' GTG sing 167 n n O4D C1D GTG sing 168 n n C3D O3D GTG sing 169 n n C3D C2D GTG sing 170 n n C3D H3' GTG sing 171 n n O3D HO3' GTG sing 172 n n C2D O2D GTG sing 173 n n C2D C1D GTG sing 174 n n C2D H2' GTG sing 175 n n O2D HO2' GTG sing 176 n n C1D H1' GTG sing 177 n n PG O1G GTG doub 178 n n PG O2G GTG sing 179 n n PG O5E GTG sing 180 n n O2G HOG2 GTG sing 181 n n O5E C5E GTG sing 182 n n C5E C4E GTG sing 183 n n C5E H5B1 GTG sing 184 n n C5E H5B2 GTG sing 185 n n C4E O4E GTG sing 186 n n C4E C3E GTG sing 187 n n C4E H4B GTG sing 188 n n O4E C1E GTG sing 189 n n C3E O3E GTG sing 190 n n C3E C2E GTG sing 191 n n C3E H3B GTG sing 192 n n O3E H3BO GTG sing 193 n n C2E O2E GTG sing 194 n n C2E C1E GTG sing 195 n n C2E H2B GTG sing 196 n n O2E H2BO GTG sing 197 n n C1E N9B GTG sing 198 n n C1E H1B GTG sing 199 n n N9B C8B GTG sing 200 n y N9B C4B GTG sing 201 n y C8B N7B GTG doub 202 n y C8B H8B GTG sing 203 n n N7B C5B GTG sing 204 n y C5B C6B GTG sing 205 n n C5B C4B GTG doub 206 n y C6B O6B GTG doub 207 n n C6B N1B GTG sing 208 n n N1B C2B GTG sing 209 n n N1B H1BN GTG sing 210 n n C2B N2B GTG sing 211 n n C2B N3B GTG doub 212 n n N2B H2B1 GTG sing 213 n n N2B H2B2 GTG sing 214 n n N3B C4B GTG sing 215 n n # _atom_sites.entry_id 2P40 _atom_sites.fract_transf_matrix[1][1] 0.008716 _atom_sites.fract_transf_matrix[1][2] 0.005032 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017722 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 297 1 SO4 SO4 . C 2 SO4 A 1 298 2 SO4 SO4 . D 2 SO4 A 1 299 3 SO4 SO4 . E 2 SO4 A 1 300 4 SO4 SO4 . F 2 SO4 A 1 301 5 SO4 SO4 . G 2 SO4 A 1 302 6 SO4 SO4 . H 2 SO4 A 1 303 7 SO4 SO4 . I 2 SO4 A 1 304 8 SO4 SO4 . J 2 SO4 A 1 305 9 SO4 SO4 . K 2 SO4 A 1 306 10 SO4 SO4 . L 2 SO4 A 1 307 12 SO4 SO4 . M 3 GTG A 1 308 13 GTG GTG . N 4 HOH A 1 309 1 HOH HOH . N 4 HOH A 2 310 2 HOH HOH . N 4 HOH A 3 311 3 HOH HOH . N 4 HOH A 4 312 4 HOH HOH . N 4 HOH A 5 313 5 HOH HOH . N 4 HOH A 6 314 6 HOH HOH . N 4 HOH A 7 315 7 HOH HOH . N 4 HOH A 8 316 9 HOH HOH . N 4 HOH A 9 317 10 HOH HOH . N 4 HOH A 10 318 11 HOH HOH . N 4 HOH A 11 319 12 HOH HOH . N 4 HOH A 12 320 13 HOH HOH . N 4 HOH A 13 321 14 HOH HOH . N 4 HOH A 14 322 15 HOH HOH . N 4 HOH A 15 323 16 HOH HOH . N 4 HOH A 16 324 17 HOH HOH . N 4 HOH A 17 325 18 HOH HOH . N 4 HOH A 18 326 19 HOH HOH . N 4 HOH A 19 327 20 HOH HOH . N 4 HOH A 20 328 21 HOH HOH . N 4 HOH A 21 329 22 HOH HOH . N 4 HOH A 22 330 23 HOH HOH . N 4 HOH A 23 331 24 HOH HOH . N 4 HOH A 24 332 25 HOH HOH . N 4 HOH A 25 333 26 HOH HOH . N 4 HOH A 26 334 27 HOH HOH . N 4 HOH A 27 335 28 HOH HOH . N 4 HOH A 28 336 29 HOH HOH . N 4 HOH A 29 337 30 HOH HOH . N 4 HOH A 30 338 31 HOH HOH . N 4 HOH A 31 339 32 HOH HOH . N 4 HOH A 32 340 33 HOH HOH . N 4 HOH A 33 341 34 HOH HOH . N 4 HOH A 34 342 35 HOH HOH . N 4 HOH A 35 343 36 HOH HOH . N 4 HOH A 36 344 39 HOH HOH . N 4 HOH A 37 345 40 HOH HOH . N 4 HOH A 38 346 41 HOH HOH . N 4 HOH A 39 347 42 HOH HOH . N 4 HOH A 40 348 43 HOH HOH . N 4 HOH A 41 349 44 HOH HOH . N 4 HOH A 42 350 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA GTG . . . M 3 16.098 54.338 -4.374 1 59.41 ? PA GTG 308 A 1 HETATM 2 O O1A GTG . . . M 3 17.453 54.999 -4.26 1 58.98 ? O1A GTG 308 A 1 HETATM 3 O O2A GTG . . . M 3 14.872 55.207 -4.38 1 59.54 ? O2A GTG 308 A 1 HETATM 4 O O3A GTG . . . M 3 15.852 53.25 -3.234 1 66.32 ? O3A GTG 308 A 1 HETATM 5 P PB GTG . . . M 3 17.016 52.947 -2.178 1 73.96 ? PB GTG 308 A 1 HETATM 6 O O1B GTG . . . M 3 17.252 54.24 -1.404 1 73.45 ? O1B GTG 308 A 1 HETATM 7 O O2B GTG . . . M 3 16.608 51.675 -1.454 1 73.55 ? O2B GTG 308 A 1 HETATM 8 O O3B GTG . . . M 3 18.267 52.649 -3.173 1 75.91 ? O3B GTG 308 A 1 HETATM 9 N N9A GTG . . . M 3 16.779 54.585 -9.045 1 43.28 ? N9A GTG 308 A 1 HETATM 10 C C8A GTG . . . M 3 17.448 54.923 -7.918 1 42.69 ? C8A GTG 308 A 1 HETATM 11 N N7A GTG . . . M 3 18.195 56.029 -8.115 1 42.18 ? N7A GTG 308 A 1 HETATM 12 C C7X GTG . . . M 3 19.056 56.691 -7.1 1 42.06 ? C7X GTG 308 A 1 HETATM 13 C C5A GTG . . . M 3 17.991 56.38 -9.393 1 42.39 ? C5A GTG 308 A 1 HETATM 14 C C6A GTG . . . M 3 18.512 57.446 -10.127 1 42.63 ? C6A GTG 308 A 1 HETATM 15 O O6A GTG . . . M 3 19.302 58.276 -9.632 1 42.3 ? O6A GTG 308 A 1 HETATM 16 N N1A GTG . . . M 3 18.136 57.572 -11.409 1 42.85 ? N1A GTG 308 A 1 HETATM 17 C C2A GTG . . . M 3 17.276 56.701 -11.977 1 42.58 ? C2A GTG 308 A 1 HETATM 18 N N2A GTG . . . M 3 16.904 56.855 -13.277 1 42.1 ? N2A GTG 308 A 1 HETATM 19 N N3A GTG . . . M 3 16.769 55.66 -11.264 1 42.21 ? N3A GTG 308 A 1 HETATM 20 C C4A GTG . . . M 3 17.114 55.486 -9.974 1 42.14 ? C4A GTG 308 A 1 HETATM 21 O O5D GTG . . . M 3 16.114 53.307 -5.6 1 56.54 ? O5D GTG 308 A 1 HETATM 22 C C5D GTG . . . M 3 14.989 52.495 -5.933 1 51.27 ? C5D GTG 308 A 1 HETATM 23 C C4D GTG . . . M 3 15.072 52.182 -7.423 1 48.78 ? C4D GTG 308 A 1 HETATM 24 O O4D GTG . . . M 3 14.857 53.344 -8.249 1 46.65 ? O4D GTG 308 A 1 HETATM 25 C C3D GTG . . . M 3 16.459 51.697 -7.789 1 47.11 ? C3D GTG 308 A 1 HETATM 26 O O3D GTG . . . M 3 16.579 50.285 -7.565 1 48.97 ? O3D GTG 308 A 1 HETATM 27 C C2D GTG . . . M 3 16.586 52.128 -9.235 1 44.88 ? C2D GTG 308 A 1 HETATM 28 O O2D GTG . . . M 3 15.856 51.251 -10.096 1 44.51 ? O2D GTG 308 A 1 HETATM 29 C C1D GTG . . . M 3 15.846 53.439 -9.271 1 43.36 ? C1D GTG 308 A 1 HETATM 30 P PG GTG . . . M 3 19.827 52.725 -2.737 1 78.61 ? PG GTG 308 A 1 HETATM 31 O O1G GTG . . . M 3 20.35 51.3 -2.725 1 78.1 ? O1G GTG 308 A 1 HETATM 32 O O2G GTG . . . M 3 19.98 53.572 -1.49 1 78.49 ? O2G GTG 308 A 1 HETATM 33 O O5E GTG . . . M 3 20.532 53.537 -3.947 1 78.72 ? O5E GTG 308 A 1 HETATM 34 C C5E GTG . . . M 3 19.92 53.674 -5.228 1 79.83 ? C5E GTG 308 A 1 HETATM 35 C C4E GTG . . . M 3 19.953 52.392 -6.065 1 80.58 ? C4E GTG 308 A 1 HETATM 36 O O4E GTG . . . M 3 19.716 52.778 -7.421 1 82.03 ? O4E GTG 308 A 1 HETATM 37 C C3E GTG . . . M 3 21.307 51.694 -6.084 1 81.06 ? C3E GTG 308 A 1 HETATM 38 O O3E GTG . . . M 3 21.099 50.295 -6.317 1 79.62 ? O3E GTG 308 A 1 HETATM 39 C C2E GTG . . . M 3 22.043 52.339 -7.249 1 81.56 ? C2E GTG 308 A 1 HETATM 40 O O2E GTG . . . M 3 23 51.485 -7.888 1 82.23 ? O2E GTG 308 A 1 HETATM 41 C C1E GTG . . . M 3 20.916 52.698 -8.207 1 81.56 ? C1E GTG 308 A 1 HETATM 42 N N9B GTG . . . M 3 21.2 53.969 -8.92 1 81.3 ? N9B GTG 308 A 1 HETATM 43 C C8B GTG . . . M 3 21.845 55.045 -8.439 1 81.3 ? C8B GTG 308 A 1 HETATM 44 N N7B GTG . . . M 3 21.907 55.988 -9.405 1 81.03 ? N7B GTG 308 A 1 HETATM 45 C C5B GTG . . . M 3 21.296 55.485 -10.496 1 81.14 ? C5B GTG 308 A 1 HETATM 46 C C6B GTG . . . M 3 21.058 55.984 -11.77 1 81.42 ? C6B GTG 308 A 1 HETATM 47 O O6B GTG . . . M 3 21.445 57.132 -12.077 1 81.44 ? O6B GTG 308 A 1 HETATM 48 N N1B GTG . . . M 3 20.401 55.216 -12.674 1 81.48 ? N1B GTG 308 A 1 HETATM 49 C C2B GTG . . . M 3 19.974 53.97 -12.346 1 81.3 ? C2B GTG 308 A 1 HETATM 50 N N2B GTG . . . M 3 19.319 53.223 -13.264 1 81.31 ? N2B GTG 308 A 1 HETATM 51 N N3B GTG . . . M 3 20.199 53.467 -11.11 1 81.08 ? N3B GTG 308 A 1 HETATM 52 C C4B GTG . . . M 3 20.854 54.21 -10.182 1 80.98 ? C4B GTG 308 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #