data_2P4G
#
_model_server_result.job_id            '_HJBFLvNisogozDP17DZNw' 
_model_server_result.datetime_utc      '2024-11-23 17:24:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p4g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":281}' 
#
_entry.id    2P4G 
#
_exptl.entry_id    2P4G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2P4G 
_cell.length_a            113.51 
_cell.length_b            113.51 
_cell.length_c            55.94 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P4G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 56.755 98.302544 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 56 A PRO 55 1_555 A N MSE 57 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MSE 57 A MSE 56 1_555 A N GLY 58 A GLY 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 A C GLU 244 A GLU 243 1_555 A N MSE 245 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C MSE 245 A MSE 244 1_555 A N LEU 246 A LEU 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     2P4G 
_atom_sites.fract_transf_matrix[1][1]    0.00881 
_atom_sites.fract_transf_matrix[1][2]    0.00509 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01017 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01788 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NO3 A 1 270 16 NO3 NO3 . 
C 3 EDO A 1 271 1 EDO EDO . 
D 3 EDO A 1 272 2 EDO EDO . 
E 3 EDO A 1 273 3 EDO EDO . 
F 3 EDO A 1 274 4 EDO EDO . 
G 3 EDO A 1 275 5 EDO EDO . 
H 3 EDO A 1 276 6 EDO EDO . 
I 3 EDO A 1 277 7 EDO EDO . 
J 3 EDO A 1 278 8 EDO EDO . 
K 3 EDO A 1 279 9 EDO EDO . 
L 3 EDO A 1 280 10 EDO EDO . 
M 3 EDO A 1 281 11 EDO EDO . 
N 3 EDO A 1 282 12 EDO EDO . 
O 3 EDO A 1 283 13 EDO EDO . 
P 3 EDO A 1 284 14 EDO EDO . 
Q 3 EDO A 1 285 15 EDO EDO . 
R 4 HOH A 1 286 17 HOH HOH . 
R 4 HOH A 2 287 18 HOH HOH . 
R 4 HOH A 3 288 19 HOH HOH . 
R 4 HOH A 4 289 20 HOH HOH . 
R 4 HOH A 5 290 21 HOH HOH . 
R 4 HOH A 6 291 22 HOH HOH . 
R 4 HOH A 7 292 23 HOH HOH . 
R 4 HOH A 8 293 24 HOH HOH . 
R 4 HOH A 9 294 25 HOH HOH . 
R 4 HOH A 10 295 26 HOH HOH . 
R 4 HOH A 11 296 27 HOH HOH . 
R 4 HOH A 12 297 28 HOH HOH . 
R 4 HOH A 13 298 29 HOH HOH . 
R 4 HOH A 14 299 30 HOH HOH . 
R 4 HOH A 15 300 31 HOH HOH . 
R 4 HOH A 16 301 32 HOH HOH . 
R 4 HOH A 17 302 33 HOH HOH . 
R 4 HOH A 18 303 34 HOH HOH . 
R 4 HOH A 19 304 35 HOH HOH . 
R 4 HOH A 20 305 36 HOH HOH . 
R 4 HOH A 21 306 37 HOH HOH . 
R 4 HOH A 22 307 38 HOH HOH . 
R 4 HOH A 23 308 39 HOH HOH . 
R 4 HOH A 24 309 40 HOH HOH . 
R 4 HOH A 25 310 41 HOH HOH . 
R 4 HOH A 26 311 42 HOH HOH . 
R 4 HOH A 27 312 43 HOH HOH . 
R 4 HOH A 28 313 44 HOH HOH . 
R 4 HOH A 29 314 45 HOH HOH . 
R 4 HOH A 30 315 46 HOH HOH . 
R 4 HOH A 31 316 47 HOH HOH . 
R 4 HOH A 32 317 48 HOH HOH . 
R 4 HOH A 33 318 49 HOH HOH . 
R 4 HOH A 34 319 50 HOH HOH . 
R 4 HOH A 35 320 51 HOH HOH . 
R 4 HOH A 36 321 52 HOH HOH . 
R 4 HOH A 37 322 53 HOH HOH . 
R 4 HOH A 38 323 54 HOH HOH . 
R 4 HOH A 39 324 55 HOH HOH . 
R 4 HOH A 40 325 56 HOH HOH . 
R 4 HOH A 41 326 57 HOH HOH . 
R 4 HOH A 42 327 58 HOH HOH . 
R 4 HOH A 43 328 59 HOH HOH . 
R 4 HOH A 44 329 60 HOH HOH . 
R 4 HOH A 45 330 61 HOH HOH . 
R 4 HOH A 46 331 62 HOH HOH . 
R 4 HOH A 47 332 63 HOH HOH . 
R 4 HOH A 48 333 64 HOH HOH . 
R 4 HOH A 49 334 65 HOH HOH . 
R 4 HOH A 50 335 66 HOH HOH . 
R 4 HOH A 51 336 67 HOH HOH . 
R 4 HOH A 52 337 68 HOH HOH . 
R 4 HOH A 53 338 69 HOH HOH . 
R 4 HOH A 54 339 70 HOH HOH . 
R 4 HOH A 55 340 71 HOH HOH . 
R 4 HOH A 56 341 72 HOH HOH . 
R 4 HOH A 57 342 73 HOH HOH . 
R 4 HOH A 58 343 74 HOH HOH . 
R 4 HOH A 59 344 75 HOH HOH . 
R 4 HOH A 60 345 76 HOH HOH . 
R 4 HOH A 61 346 77 HOH HOH . 
R 4 HOH A 62 347 78 HOH HOH . 
R 4 HOH A 63 348 79 HOH HOH . 
R 4 HOH A 64 349 80 HOH HOH . 
R 4 HOH A 65 350 81 HOH HOH . 
R 4 HOH A 66 351 82 HOH HOH . 
R 4 HOH A 67 352 83 HOH HOH . 
R 4 HOH A 68 353 84 HOH HOH . 
R 4 HOH A 69 354 85 HOH HOH . 
R 4 HOH A 70 355 86 HOH HOH . 
R 4 HOH A 71 356 87 HOH HOH . 
R 4 HOH A 72 357 88 HOH HOH . 
R 4 HOH A 73 358 89 HOH HOH . 
R 4 HOH A 74 359 90 HOH HOH . 
R 4 HOH A 75 360 91 HOH HOH . 
R 4 HOH A 76 361 92 HOH HOH . 
R 4 HOH A 77 362 93 HOH HOH . 
R 4 HOH A 78 363 94 HOH HOH . 
R 4 HOH A 79 364 95 HOH HOH . 
R 4 HOH A 80 365 96 HOH HOH . 
R 4 HOH A 81 366 97 HOH HOH . 
R 4 HOH A 82 367 98 HOH HOH . 
R 4 HOH A 83 368 99 HOH HOH . 
R 4 HOH A 84 369 100 HOH HOH . 
R 4 HOH A 85 370 101 HOH HOH . 
R 4 HOH A 86 371 102 HOH HOH . 
R 4 HOH A 87 372 103 HOH HOH . 
R 4 HOH A 88 373 104 HOH HOH . 
R 4 HOH A 89 374 105 HOH HOH . 
R 4 HOH A 90 375 106 HOH HOH . 
R 4 HOH A 91 376 107 HOH HOH . 
R 4 HOH A 92 377 108 HOH HOH . 
R 4 HOH A 93 378 109 HOH HOH . 
R 4 HOH A 94 379 110 HOH HOH . 
R 4 HOH A 95 380 111 HOH HOH . 
R 4 HOH A 96 381 112 HOH HOH . 
R 4 HOH A 97 382 113 HOH HOH . 
R 4 HOH A 98 383 114 HOH HOH . 
R 4 HOH A 99 384 115 HOH HOH . 
R 4 HOH A 100 385 116 HOH HOH . 
R 4 HOH A 101 386 117 HOH HOH . 
R 4 HOH A 102 387 118 HOH HOH . 
R 4 HOH A 103 388 119 HOH HOH . 
R 4 HOH A 104 389 120 HOH HOH . 
R 4 HOH A 105 390 121 HOH HOH . 
R 4 HOH A 106 391 122 HOH HOH . 
R 4 HOH A 107 392 123 HOH HOH . 
R 4 HOH A 108 393 124 HOH HOH . 
R 4 HOH A 109 394 125 HOH HOH . 
R 4 HOH A 110 395 126 HOH HOH . 
R 4 HOH A 111 396 127 HOH HOH . 
R 4 HOH A 112 397 128 HOH HOH . 
R 4 HOH A 113 398 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 3 53.701 30.807 2.356 1 81.1 ? C1 EDO 281 A 1 
HETATM 2 O O1 EDO . . . M 3 54.152 31.41 3.595 1 79.29 ? O1 EDO 281 A 1 
HETATM 3 C C2 EDO . . . M 3 53.05 29.437 2.532 1 78.05 ? C2 EDO 281 A 1 
HETATM 4 O O2 EDO . . . M 3 51.936 29.472 3.454 1 68.12 ? O2 EDO 281 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#