data_2P4I # _model_server_result.job_id BjkFvMv4kiDchn2tutc_Uw _model_server_result.datetime_utc '2025-01-11 17:45:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p4i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 2P4I # _exptl.entry_id 2P4I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 564.558 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-METHYL-3-({3-[2-(METHYLAMINO)PYRIMIDIN-4-YL]PYRIDIN-2-YL}OXY)-N-[2-MORPHOLIN-4-YL-5-(TRIFLUOROMETHYL)PHENYL]BENZAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P4I _cell.length_a 64.262 _cell.length_b 63.189 _cell.length_c 175.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P4I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C29 H27 F3 N6 O3' _chem_comp.formula_weight 564.558 _chem_comp.id MR9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-METHYL-3-({3-[2-(METHYLAMINO)PYRIMIDIN-4-YL]PYRIDIN-2-YL}OXY)-N-[2-MORPHOLIN-4-YL-5-(TRIFLUOROMETHYL)PHENYL]BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C27 MR9 sing 237 n n C26 N6 MR9 sing 238 n n C26 H261 MR9 sing 239 n n C26 H262 MR9 sing 240 n n C27 O3 MR9 sing 241 n n C27 H271 MR9 sing 242 n n C27 H272 MR9 sing 243 n n O3 C28 MR9 sing 244 n n C28 C29 MR9 sing 245 n n C28 H281 MR9 sing 246 n n C28 H282 MR9 sing 247 n n C29 N6 MR9 sing 248 n n C29 H291 MR9 sing 249 n n C29 H292 MR9 sing 250 n n N6 C20 MR9 sing 251 n n C20 C19 MR9 sing 252 n y C20 C21 MR9 doub 253 n y C21 C22 MR9 sing 254 n y C21 H21 MR9 sing 255 n n C22 C23 MR9 doub 256 n y C22 H22 MR9 sing 257 n n C23 C24 MR9 sing 258 n y C23 C25 MR9 sing 259 n n C25 F1 MR9 sing 260 n n C25 F2 MR9 sing 261 n n C25 F3 MR9 sing 262 n n C24 C19 MR9 doub 263 n y C24 H24 MR9 sing 264 n n C19 N4 MR9 sing 265 n n N4 C17 MR9 sing 266 n n N4 HN4 MR9 sing 267 n n C17 O2 MR9 doub 268 n n C17 C12 MR9 sing 269 n n C12 C11 MR9 sing 270 n y C12 C13 MR9 doub 271 n y C11 C10 MR9 doub 272 n y C11 H11 MR9 sing 273 n n C13 C14 MR9 sing 274 n y C13 H13 MR9 sing 275 n n C14 C15 MR9 doub 276 n y C14 H14 MR9 sing 277 n n C15 C10 MR9 sing 278 n y C15 C16 MR9 sing 279 n n C16 H161 MR9 sing 280 n n C16 H162 MR9 sing 281 n n C16 H163 MR9 sing 282 n n C10 O1 MR9 sing 283 n n O1 C9 MR9 sing 284 n n C9 C5 MR9 doub 285 n y C9 N3 MR9 sing 286 n y N3 C8 MR9 doub 287 n y C8 C7 MR9 sing 288 n y C8 H8 MR9 sing 289 n n C7 C6 MR9 doub 290 n y C7 H7 MR9 sing 291 n n C6 C5 MR9 sing 292 n y C6 H6 MR9 sing 293 n n C5 C2 MR9 sing 294 n y C2 N1 MR9 sing 295 n y C2 C3 MR9 doub 296 n y N1 C1 MR9 doub 297 n y C3 C4 MR9 sing 298 n y C3 H3 MR9 sing 299 n n C4 N2 MR9 doub 300 n y C4 H4 MR9 sing 301 n n N2 C1 MR9 sing 302 n y C1 N5 MR9 sing 303 n n N5 C18 MR9 sing 304 n n N5 HN5 MR9 sing 305 n n C18 H181 MR9 sing 306 n n C18 H182 MR9 sing 307 n n C18 H183 MR9 sing 308 n n # _atom_sites.entry_id 2P4I _atom_sites.fract_transf_matrix[1][1] 0.015561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MR9 A 1 301 1 MR9 LIG . D 2 MR9 B 1 302 1 MR9 LIG . E 3 HOH A 1 5 5 HOH HOH . E 3 HOH A 2 6 6 HOH HOH . E 3 HOH A 3 8 8 HOH HOH . E 3 HOH A 4 11 11 HOH HOH . E 3 HOH A 5 12 12 HOH HOH . E 3 HOH A 6 13 13 HOH HOH . E 3 HOH A 7 14 14 HOH HOH . E 3 HOH A 8 15 15 HOH HOH . E 3 HOH A 9 16 16 HOH HOH . E 3 HOH A 10 19 19 HOH HOH . E 3 HOH A 11 25 25 HOH HOH . E 3 HOH A 12 28 28 HOH HOH . E 3 HOH A 13 30 30 HOH HOH . E 3 HOH A 14 31 31 HOH HOH . E 3 HOH A 15 34 34 HOH HOH . E 3 HOH A 16 36 36 HOH HOH . E 3 HOH A 17 37 37 HOH HOH . E 3 HOH A 18 38 38 HOH HOH . E 3 HOH A 19 40 40 HOH HOH . E 3 HOH A 20 42 42 HOH HOH . E 3 HOH A 21 44 44 HOH HOH . E 3 HOH A 22 46 46 HOH HOH . E 3 HOH A 23 51 51 HOH HOH . E 3 HOH A 24 52 52 HOH HOH . E 3 HOH A 25 53 53 HOH HOH . E 3 HOH A 26 57 57 HOH HOH . E 3 HOH A 27 58 58 HOH HOH . E 3 HOH A 28 59 59 HOH HOH . E 3 HOH A 29 64 64 HOH HOH . E 3 HOH A 30 65 65 HOH HOH . E 3 HOH A 31 66 66 HOH HOH . E 3 HOH A 32 67 67 HOH HOH . E 3 HOH A 33 68 68 HOH HOH . E 3 HOH A 34 71 71 HOH HOH . E 3 HOH A 35 72 72 HOH HOH . E 3 HOH A 36 73 73 HOH HOH . E 3 HOH A 37 76 76 HOH HOH . E 3 HOH A 38 77 77 HOH HOH . E 3 HOH A 39 79 79 HOH HOH . E 3 HOH A 40 81 81 HOH HOH . E 3 HOH A 41 82 82 HOH HOH . E 3 HOH A 42 83 83 HOH HOH . E 3 HOH A 43 84 84 HOH HOH . E 3 HOH A 44 87 87 HOH HOH . E 3 HOH A 45 88 88 HOH HOH . E 3 HOH A 46 89 89 HOH HOH . E 3 HOH A 47 90 90 HOH HOH . E 3 HOH A 48 91 91 HOH HOH . E 3 HOH A 49 94 94 HOH HOH . E 3 HOH A 50 95 95 HOH HOH . E 3 HOH A 51 98 98 HOH HOH . E 3 HOH A 52 99 99 HOH HOH . E 3 HOH A 53 101 101 HOH HOH . E 3 HOH A 54 102 102 HOH HOH . E 3 HOH A 55 107 107 HOH HOH . E 3 HOH A 56 108 108 HOH HOH . E 3 HOH A 57 111 111 HOH HOH . E 3 HOH A 58 112 112 HOH HOH . E 3 HOH A 59 114 114 HOH HOH . E 3 HOH A 60 115 115 HOH HOH . E 3 HOH A 61 116 116 HOH HOH . E 3 HOH A 62 120 120 HOH HOH . E 3 HOH A 63 122 122 HOH HOH . E 3 HOH A 64 123 123 HOH HOH . E 3 HOH A 65 124 124 HOH HOH . E 3 HOH A 66 129 129 HOH HOH . E 3 HOH A 67 131 131 HOH HOH . E 3 HOH A 68 132 132 HOH HOH . E 3 HOH A 69 137 137 HOH HOH . E 3 HOH A 70 139 139 HOH HOH . E 3 HOH A 71 141 141 HOH HOH . E 3 HOH A 72 150 150 HOH HOH . E 3 HOH A 73 153 153 HOH HOH . E 3 HOH A 74 155 155 HOH HOH . E 3 HOH A 75 159 159 HOH HOH . E 3 HOH A 76 164 164 HOH HOH . E 3 HOH A 77 166 166 HOH HOH . E 3 HOH A 78 172 172 HOH HOH . E 3 HOH A 79 173 173 HOH HOH . E 3 HOH A 80 182 182 HOH HOH . E 3 HOH A 81 183 183 HOH HOH . E 3 HOH A 82 187 187 HOH HOH . E 3 HOH A 83 189 189 HOH HOH . E 3 HOH A 84 190 190 HOH HOH . E 3 HOH A 85 196 196 HOH HOH . E 3 HOH A 86 200 200 HOH HOH . E 3 HOH A 87 201 201 HOH HOH . E 3 HOH A 88 202 202 HOH HOH . E 3 HOH A 89 203 203 HOH HOH . E 3 HOH A 90 204 204 HOH HOH . E 3 HOH A 91 207 207 HOH HOH . E 3 HOH A 92 208 208 HOH HOH . E 3 HOH A 93 209 209 HOH HOH . E 3 HOH A 94 210 210 HOH HOH . E 3 HOH A 95 211 211 HOH HOH . E 3 HOH A 96 212 212 HOH HOH . E 3 HOH A 97 213 213 HOH HOH . E 3 HOH A 98 214 214 HOH HOH . E 3 HOH A 99 215 215 HOH HOH . E 3 HOH A 100 217 217 HOH HOH . E 3 HOH A 101 220 220 HOH HOH . E 3 HOH A 102 222 222 HOH HOH . E 3 HOH A 103 223 223 HOH HOH . E 3 HOH A 104 224 224 HOH HOH . E 3 HOH A 105 226 226 HOH HOH . E 3 HOH A 106 228 228 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 2 2 HOH HOH . F 3 HOH B 3 3 3 HOH HOH . F 3 HOH B 4 4 4 HOH HOH . F 3 HOH B 5 7 7 HOH HOH . F 3 HOH B 6 9 9 HOH HOH . F 3 HOH B 7 10 10 HOH HOH . F 3 HOH B 8 17 17 HOH HOH . F 3 HOH B 9 18 18 HOH HOH . F 3 HOH B 10 20 20 HOH HOH . F 3 HOH B 11 21 21 HOH HOH . F 3 HOH B 12 22 22 HOH HOH . F 3 HOH B 13 23 23 HOH HOH . F 3 HOH B 14 24 24 HOH HOH . F 3 HOH B 15 26 26 HOH HOH . F 3 HOH B 16 29 29 HOH HOH . F 3 HOH B 17 32 32 HOH HOH . F 3 HOH B 18 35 35 HOH HOH . F 3 HOH B 19 41 41 HOH HOH . F 3 HOH B 20 45 45 HOH HOH . F 3 HOH B 21 47 47 HOH HOH . F 3 HOH B 22 48 48 HOH HOH . F 3 HOH B 23 49 49 HOH HOH . F 3 HOH B 24 50 50 HOH HOH . F 3 HOH B 25 54 54 HOH HOH . F 3 HOH B 26 56 56 HOH HOH . F 3 HOH B 27 60 60 HOH HOH . F 3 HOH B 28 61 61 HOH HOH . F 3 HOH B 29 70 70 HOH HOH . F 3 HOH B 30 74 74 HOH HOH . F 3 HOH B 31 75 75 HOH HOH . F 3 HOH B 32 78 78 HOH HOH . F 3 HOH B 33 80 80 HOH HOH . F 3 HOH B 34 86 86 HOH HOH . F 3 HOH B 35 92 92 HOH HOH . F 3 HOH B 36 97 97 HOH HOH . F 3 HOH B 37 100 100 HOH HOH . F 3 HOH B 38 104 104 HOH HOH . F 3 HOH B 39 105 105 HOH HOH . F 3 HOH B 40 106 106 HOH HOH . F 3 HOH B 41 110 110 HOH HOH . F 3 HOH B 42 119 119 HOH HOH . F 3 HOH B 43 121 121 HOH HOH . F 3 HOH B 44 126 126 HOH HOH . F 3 HOH B 45 127 127 HOH HOH . F 3 HOH B 46 128 128 HOH HOH . F 3 HOH B 47 136 136 HOH HOH . F 3 HOH B 48 140 140 HOH HOH . F 3 HOH B 49 142 142 HOH HOH . F 3 HOH B 50 149 149 HOH HOH . F 3 HOH B 51 152 152 HOH HOH . F 3 HOH B 52 158 158 HOH HOH . F 3 HOH B 53 160 160 HOH HOH . F 3 HOH B 54 161 161 HOH HOH . F 3 HOH B 55 162 162 HOH HOH . F 3 HOH B 56 163 163 HOH HOH . F 3 HOH B 57 170 170 HOH HOH . F 3 HOH B 58 175 175 HOH HOH . F 3 HOH B 59 180 180 HOH HOH . F 3 HOH B 60 191 191 HOH HOH . F 3 HOH B 61 195 195 HOH HOH . F 3 HOH B 62 197 197 HOH HOH . F 3 HOH B 63 198 198 HOH HOH . F 3 HOH B 64 199 199 HOH HOH . F 3 HOH B 65 205 205 HOH HOH . F 3 HOH B 66 206 206 HOH HOH . F 3 HOH B 67 216 216 HOH HOH . F 3 HOH B 68 218 218 HOH HOH . F 3 HOH B 69 219 219 HOH HOH . F 3 HOH B 70 221 221 HOH HOH . F 3 HOH B 71 225 225 HOH HOH . F 3 HOH B 72 227 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 MR9 . . . D 2 50.443 17.037 42.813 1 57.19 ? C26 MR9 302 B 1 HETATM 2 C C27 MR9 . . . D 2 49.335 15.961 42.794 1 57.94 ? C27 MR9 302 B 1 HETATM 3 O O3 MR9 . . . D 2 48.26 16.263 43.75 1 59.27 ? O3 MR9 302 B 1 HETATM 4 C C28 MR9 . . . D 2 48.727 16.775 45.053 1 57.84 ? C28 MR9 302 B 1 HETATM 5 C C29 MR9 . . . D 2 49.68 17.982 44.936 1 57.51 ? C29 MR9 302 B 1 HETATM 6 N N6 MR9 . . . D 2 49.973 18.265 43.509 1 56.31 ? N6 MR9 302 B 1 HETATM 7 C C20 MR9 . . . D 2 50.858 19.264 43.335 1 56.39 ? C20 MR9 302 B 1 HETATM 8 C C21 MR9 . . . D 2 51.974 19.416 44.17 1 56.46 ? C21 MR9 302 B 1 HETATM 9 C C22 MR9 . . . D 2 52.873 20.453 43.948 1 56.1 ? C22 MR9 302 B 1 HETATM 10 C C23 MR9 . . . D 2 52.67 21.347 42.888 1 55.64 ? C23 MR9 302 B 1 HETATM 11 C C25 MR9 . . . D 2 53.681 22.483 42.64 1 54.29 ? C25 MR9 302 B 1 HETATM 12 F F2 MR9 . . . D 2 54.598 22.094 41.778 1 52.49 ? F2 MR9 302 B 1 HETATM 13 F F3 MR9 . . . D 2 54.254 22.773 43.782 1 52.06 ? F3 MR9 302 B 1 HETATM 14 F F1 MR9 . . . D 2 53.13 23.551 42.119 1 52.73 ? F1 MR9 302 B 1 HETATM 15 C C24 MR9 . . . D 2 51.566 21.195 42.052 1 55.2 ? C24 MR9 302 B 1 HETATM 16 C C19 MR9 . . . D 2 50.666 20.155 42.272 1 56.42 ? C19 MR9 302 B 1 HETATM 17 N N4 MR9 . . . D 2 49.6 19.987 41.482 1 56.88 ? N4 MR9 302 B 1 HETATM 18 C C17 MR9 . . . D 2 49.658 20.03 40.147 1 57.4 ? C17 MR9 302 B 1 HETATM 19 O O2 MR9 . . . D 2 50.689 20.231 39.502 1 58.83 ? O2 MR9 302 B 1 HETATM 20 C C12 MR9 . . . D 2 48.326 19.792 39.429 1 56.7 ? C12 MR9 302 B 1 HETATM 21 C C11 MR9 . . . D 2 48.188 20.16 38.1 1 56.25 ? C11 MR9 302 B 1 HETATM 22 C C13 MR9 . . . D 2 47.264 19.187 40.099 1 57.36 ? C13 MR9 302 B 1 HETATM 23 C C14 MR9 . . . D 2 46.052 18.956 39.452 1 58.01 ? C14 MR9 302 B 1 HETATM 24 C C15 MR9 . . . D 2 45.909 19.329 38.118 1 58.07 ? C15 MR9 302 B 1 HETATM 25 C C16 MR9 . . . D 2 44.571 19.069 37.421 1 57.3 ? C16 MR9 302 B 1 HETATM 26 C C10 MR9 . . . D 2 46.987 19.929 37.437 1 57.37 ? C10 MR9 302 B 1 HETATM 27 O O1 MR9 . . . D 2 46.878 20.315 36.132 1 56.3 ? O1 MR9 302 B 1 HETATM 28 C C9 MR9 . . . D 2 47.153 19.37 35.185 1 55.59 ? C9 MR9 302 B 1 HETATM 29 N N3 MR9 . . . D 2 47.29 18.072 35.544 1 54.94 ? N3 MR9 302 B 1 HETATM 30 C C8 MR9 . . . D 2 47.551 17.119 34.665 1 55.1 ? C8 MR9 302 B 1 HETATM 31 C C7 MR9 . . . D 2 47.687 17.439 33.311 1 55.87 ? C7 MR9 302 B 1 HETATM 32 C C6 MR9 . . . D 2 47.555 18.764 32.896 1 55.54 ? C6 MR9 302 B 1 HETATM 33 C C5 MR9 . . . D 2 47.286 19.761 33.839 1 55.14 ? C5 MR9 302 B 1 HETATM 34 C C2 MR9 . . . D 2 47.166 21.099 33.409 1 55.04 ? C2 MR9 302 B 1 HETATM 35 N N1 MR9 . . . D 2 47.277 21.396 32.097 1 55.22 ? N1 MR9 302 B 1 HETATM 36 C C3 MR9 . . . D 2 46.957 22.16 34.288 1 54.08 ? C3 MR9 302 B 1 HETATM 37 C C4 MR9 . . . D 2 46.854 23.456 33.79 1 54.39 ? C4 MR9 302 B 1 HETATM 38 N N2 MR9 . . . D 2 46.965 23.673 32.49 1 54.5 ? N2 MR9 302 B 1 HETATM 39 C C1 MR9 . . . D 2 47.175 22.657 31.638 1 53.62 ? C1 MR9 302 B 1 HETATM 40 N N5 MR9 . . . D 2 47.284 22.908 30.337 1 53.54 ? N5 MR9 302 B 1 HETATM 41 C C18 MR9 . . . D 2 47.613 21.851 29.371 1 52.88 ? C18 MR9 302 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #