data_2P4P # _model_server_result.job_id ZTaNSrApk6fpowsZxrrFJw _model_server_result.datetime_utc '2024-10-19 04:44:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2P4P # _exptl.entry_id 2P4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P4P _cell.length_a 29.552 _cell.length_b 58.667 _cell.length_c 87.434 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 69 B ASP 66 1_555 D MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 B O THR 70 B THR 67 1_555 D MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 B OE1 GLU 71 B GLU 68 1_555 D MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ARG 5 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C VAL 22 A VAL 19 1_555 A N MSE 23 A MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 23 A MSE 20 1_555 A N ARG 24 A ARG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C PHE 43 A PHE 40 1_555 A N MSE 44 A MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C MSE 44 A MSE 41 1_555 A N MSE 45 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C MSE 45 A MSE 42 1_555 A N TYR 46 A TYR 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C TYR 46 A TYR 43 1_555 A N MSE 47 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 47 A MSE 44 1_555 A N LEU 48 A LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C ARG 49 A ARG 46 1_555 A N MLY 50 A MLY 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MLY 50 A MLY 47 1_555 A N ILE 51 A ILE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C PRO 52 A PRO 49 1_555 A N MLY 53 A MLY 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale13 A C MLY 53 A MLY 50 1_555 A N MLY 54 A MLY 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale14 A C MLY 54 A MLY 51 1_555 A N THR 55 A THR 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 A C ASP 61 A ASP 58 1_555 A N MLY 62 A MLY 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 A C MLY 62 A MLY 59 1_555 A N TYR 63 A TYR 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 A C TYR 63 A TYR 60 1_555 A N MLY 64 A MLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale18 A C MLY 64 A MLY 61 1_555 A N PHE 65 A PHE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 A C LEU 78 A LEU 75 1_555 A N MSE 79 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale20 A C MSE 79 A MSE 76 1_555 A N VAL 80 A VAL 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 A C ARG 83 A ARG 80 1_555 A N MLY 84 A MLY 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 A C MLY 84 A MLY 81 1_555 A N ASP 85 A ASP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 B C VAL 22 B VAL 19 1_555 B N MSE 23 B MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale24 B C MSE 23 B MSE 20 1_555 B N ARG 24 B ARG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale25 B C PHE 43 B PHE 40 1_555 B N MSE 44 B MSE 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale26 B C MSE 44 B MSE 41 1_555 B N MSE 45 B MSE 42 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale27 B C MSE 44 B MSE 41 1_555 B N MSE 45 B MSE 42 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.325 ? covale ? covale28 B C MSE 45 B MSE 42 1_555 B N TYR 46 B TYR 43 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 B C MSE 45 B MSE 42 1_555 B N TYR 46 B TYR 43 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale30 B C TYR 46 B TYR 43 1_555 B N MSE 47 B MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale31 B C MSE 47 B MSE 44 1_555 B N LEU 48 B LEU 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale32 B C ARG 49 B ARG 46 1_555 B N MLY 50 B MLY 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale33 B C MLY 50 B MLY 47 1_555 B N ILE 51 B ILE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale34 B C PRO 52 B PRO 49 1_555 B N MLY 53 B MLY 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale35 B C MLY 53 B MLY 50 1_555 B N MLY 54 B MLY 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale36 B C MLY 54 B MLY 51 1_555 B N THR 55 B THR 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale37 B C ASP 61 B ASP 58 1_555 B N MLY 62 B MLY 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale38 B C MLY 62 B MLY 59 1_555 B N TYR 63 B TYR 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale39 B C TYR 63 B TYR 60 1_555 B N MLY 64 B MLY 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale40 B C MLY 64 B MLY 61 1_555 B N PHE 65 B PHE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale41 B C LEU 78 B LEU 75 1_555 B N MSE 79 B MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale42 B C MSE 79 B MSE 76 1_555 B N VAL 80 B VAL 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale43 B C ARG 83 B ARG 80 1_555 B N MLY 84 B MLY 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale44 B C MLY 84 B MLY 81 1_555 B N ASP 85 B ASP 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc4 D MG MG . B MG 301 1_555 F O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc5 D MG MG . B MG 301 1_555 G O HOH . B HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2P4P _atom_sites.fract_transf_matrix[1][1] 0.033839 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 201 CA CA . D 3 MG B 1 301 301 MG MG . E 4 GOL B 1 401 401 GOL GOL . F 5 HOH A 1 202 2 HOH HOH . F 5 HOH A 2 203 5 HOH HOH . F 5 HOH A 3 204 6 HOH HOH . F 5 HOH A 4 205 7 HOH HOH . F 5 HOH A 5 206 10 HOH HOH . F 5 HOH A 6 207 12 HOH HOH . F 5 HOH A 7 208 13 HOH HOH . F 5 HOH A 8 209 14 HOH HOH . F 5 HOH A 9 210 15 HOH HOH . F 5 HOH A 10 211 17 HOH HOH . F 5 HOH A 11 212 18 HOH HOH . F 5 HOH A 12 213 20 HOH HOH . F 5 HOH A 13 214 22 HOH HOH . F 5 HOH A 14 215 23 HOH HOH . F 5 HOH A 15 216 24 HOH HOH . F 5 HOH A 16 217 25 HOH HOH . F 5 HOH A 17 218 28 HOH HOH . F 5 HOH A 18 219 30 HOH HOH . F 5 HOH A 19 220 32 HOH HOH . F 5 HOH A 20 221 35 HOH HOH . F 5 HOH A 21 222 36 HOH HOH . F 5 HOH A 22 223 40 HOH HOH . F 5 HOH A 23 224 43 HOH HOH . F 5 HOH A 24 225 46 HOH HOH . F 5 HOH A 25 226 47 HOH HOH . F 5 HOH A 26 227 48 HOH HOH . F 5 HOH A 27 228 52 HOH HOH . F 5 HOH A 28 229 53 HOH HOH . F 5 HOH A 29 230 58 HOH HOH . F 5 HOH A 30 231 59 HOH HOH . F 5 HOH A 31 232 64 HOH HOH . F 5 HOH A 32 233 72 HOH HOH . F 5 HOH A 33 234 73 HOH HOH . F 5 HOH A 34 235 74 HOH HOH . F 5 HOH A 35 236 76 HOH HOH . F 5 HOH A 36 237 77 HOH HOH . F 5 HOH A 37 238 78 HOH HOH . F 5 HOH A 38 239 79 HOH HOH . F 5 HOH A 39 240 81 HOH HOH . F 5 HOH A 40 241 83 HOH HOH . F 5 HOH A 41 242 95 HOH HOH . F 5 HOH A 42 243 99 HOH HOH . F 5 HOH A 43 244 101 HOH HOH . F 5 HOH A 44 245 105 HOH HOH . F 5 HOH A 45 246 108 HOH HOH . F 5 HOH A 46 247 110 HOH HOH . F 5 HOH A 47 248 111 HOH HOH . F 5 HOH A 48 249 113 HOH HOH . F 5 HOH A 49 250 115 HOH HOH . F 5 HOH A 50 251 116 HOH HOH . F 5 HOH A 51 252 117 HOH HOH . G 5 HOH B 1 402 1 HOH HOH . G 5 HOH B 2 403 3 HOH HOH . G 5 HOH B 3 404 4 HOH HOH . G 5 HOH B 4 405 8 HOH HOH . G 5 HOH B 5 406 9 HOH HOH . G 5 HOH B 6 407 11 HOH HOH . G 5 HOH B 7 408 16 HOH HOH . G 5 HOH B 8 409 19 HOH HOH . G 5 HOH B 9 410 21 HOH HOH . G 5 HOH B 10 411 26 HOH HOH . G 5 HOH B 11 412 29 HOH HOH . G 5 HOH B 12 413 31 HOH HOH . G 5 HOH B 13 414 33 HOH HOH . G 5 HOH B 14 415 34 HOH HOH . G 5 HOH B 15 416 37 HOH HOH . G 5 HOH B 16 417 39 HOH HOH . G 5 HOH B 17 418 41 HOH HOH . G 5 HOH B 18 419 44 HOH HOH . G 5 HOH B 19 420 45 HOH HOH . G 5 HOH B 20 421 49 HOH HOH . G 5 HOH B 21 422 50 HOH HOH . G 5 HOH B 22 423 51 HOH HOH . G 5 HOH B 23 424 55 HOH HOH . G 5 HOH B 24 425 56 HOH HOH . G 5 HOH B 25 426 57 HOH HOH . G 5 HOH B 26 427 61 HOH HOH . G 5 HOH B 27 428 62 HOH HOH . G 5 HOH B 28 429 63 HOH HOH . G 5 HOH B 29 430 65 HOH HOH . G 5 HOH B 30 431 66 HOH HOH . G 5 HOH B 31 432 67 HOH HOH . G 5 HOH B 32 433 68 HOH HOH . G 5 HOH B 33 434 70 HOH HOH . G 5 HOH B 34 435 71 HOH HOH . G 5 HOH B 35 436 75 HOH HOH . G 5 HOH B 36 437 80 HOH HOH . G 5 HOH B 37 438 82 HOH HOH . G 5 HOH B 38 439 84 HOH HOH . G 5 HOH B 39 440 88 HOH HOH . G 5 HOH B 40 441 89 HOH HOH . G 5 HOH B 41 442 92 HOH HOH . G 5 HOH B 42 443 102 HOH HOH . G 5 HOH B 43 444 103 HOH HOH . G 5 HOH B 44 445 106 HOH HOH . G 5 HOH B 45 446 109 HOH HOH . G 5 HOH B 46 447 112 HOH HOH . G 5 HOH B 47 448 120 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.105 _atom_site.Cartn_y 55.567 _atom_site.Cartn_z 2.676 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #