data_2P4R
#
_model_server_result.job_id            1SPE-ahhnMif3a_aIJMNfA 
_model_server_result.datetime_utc      '2024-11-30 00:51:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p4r 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":71}' 
#
_entry.id    2P4R 
#
_exptl.entry_id    2P4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2P4R 
_cell.length_a            41.747 
_cell.length_b            41.747 
_cell.length_c            149.278 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2P4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     2P4R 
_atom_sites.fract_transf_matrix[1][1]    0.02395 
_atom_sites.fract_transf_matrix[1][2]    0.01383 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 81 81 SO4 SO4 . 
D 4 GOL A 1 71 71 GOL GOL . 
E 5 HOH A 1 82 1 HOH HOH . 
E 5 HOH A 2 83 2 HOH HOH . 
E 5 HOH A 3 84 3 HOH HOH . 
E 5 HOH A 4 85 4 HOH HOH . 
E 5 HOH A 5 86 7 HOH HOH . 
E 5 HOH A 6 87 8 HOH HOH . 
E 5 HOH A 7 88 9 HOH HOH . 
E 5 HOH A 8 89 10 HOH HOH . 
E 5 HOH A 9 90 11 HOH HOH . 
E 5 HOH A 10 91 12 HOH HOH . 
E 5 HOH A 11 92 13 HOH HOH . 
E 5 HOH A 12 93 15 HOH HOH . 
E 5 HOH A 13 94 17 HOH HOH . 
E 5 HOH A 14 95 19 HOH HOH . 
E 5 HOH A 15 96 20 HOH HOH . 
E 5 HOH A 16 97 22 HOH HOH . 
E 5 HOH A 17 98 23 HOH HOH . 
E 5 HOH A 18 99 24 HOH HOH . 
E 5 HOH A 19 100 25 HOH HOH . 
E 5 HOH A 20 101 28 HOH HOH . 
E 5 HOH A 21 102 29 HOH HOH . 
E 5 HOH A 22 103 30 HOH HOH . 
E 5 HOH A 23 104 31 HOH HOH . 
E 5 HOH A 24 105 32 HOH HOH . 
E 5 HOH A 25 106 34 HOH HOH . 
E 5 HOH A 26 107 35 HOH HOH . 
E 5 HOH A 27 108 36 HOH HOH . 
E 5 HOH A 28 109 37 HOH HOH . 
E 5 HOH A 29 110 38 HOH HOH . 
E 5 HOH A 30 111 39 HOH HOH . 
E 5 HOH A 31 112 40 HOH HOH . 
E 5 HOH A 32 113 42 HOH HOH . 
E 5 HOH A 33 114 44 HOH HOH . 
E 5 HOH A 34 115 47 HOH HOH . 
E 5 HOH A 35 116 49 HOH HOH . 
E 5 HOH A 36 117 50 HOH HOH . 
E 5 HOH A 37 118 51 HOH HOH . 
E 5 HOH A 38 119 53 HOH HOH . 
E 5 HOH A 39 120 54 HOH HOH . 
E 5 HOH A 40 121 55 HOH HOH . 
E 5 HOH A 41 122 56 HOH HOH . 
E 5 HOH A 42 123 60 HOH HOH . 
E 5 HOH A 43 124 61 HOH HOH . 
E 5 HOH A 44 125 62 HOH HOH . 
E 5 HOH A 45 126 64 HOH HOH . 
E 5 HOH A 46 127 65 HOH HOH . 
E 5 HOH A 47 128 66 HOH HOH . 
E 5 HOH A 48 129 67 HOH HOH . 
E 5 HOH A 49 130 68 HOH HOH . 
E 5 HOH A 50 131 69 HOH HOH . 
F 5 HOH T 1 5 5 HOH HOH . 
F 5 HOH T 2 6 6 HOH HOH . 
F 5 HOH T 3 14 14 HOH HOH . 
F 5 HOH T 4 16 16 HOH HOH . 
F 5 HOH T 5 18 18 HOH HOH . 
F 5 HOH T 6 21 21 HOH HOH . 
F 5 HOH T 7 26 26 HOH HOH . 
F 5 HOH T 8 27 27 HOH HOH . 
F 5 HOH T 9 33 33 HOH HOH . 
F 5 HOH T 10 41 41 HOH HOH . 
F 5 HOH T 11 43 43 HOH HOH . 
F 5 HOH T 12 45 45 HOH HOH . 
F 5 HOH T 13 46 46 HOH HOH . 
F 5 HOH T 14 48 48 HOH HOH . 
F 5 HOH T 15 52 52 HOH HOH . 
F 5 HOH T 16 57 57 HOH HOH . 
F 5 HOH T 17 58 58 HOH HOH . 
F 5 HOH T 18 59 59 HOH HOH . 
F 5 HOH T 19 63 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 18.526 6.057 -0.358 1 43.78 ? C1 GOL 71 A 1 
HETATM 2 O O1 GOL . . . D 4 17.27 6.368 0.202 1 43.76 ? O1 GOL 71 A 1 
HETATM 3 C C2 GOL . . . D 4 18.858 4.599 -0.062 1 43.73 ? C2 GOL 71 A 1 
HETATM 4 O O2 GOL . . . D 4 20.245 4.383 -0.201 1 43.52 ? O2 GOL 71 A 1 
HETATM 5 C C3 GOL . . . D 4 18.105 3.703 -1.038 1 43.5 ? C3 GOL 71 A 1 
HETATM 6 O O3 GOL . . . D 4 18.094 2.39 -0.534 1 43.05 ? O3 GOL 71 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
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