data_2P4Y
#
_model_server_result.job_id            QwZByBlTREgxDlGGb3lGiQ 
_model_server_result.datetime_utc      '2024-10-12 16:32:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p4y 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":479}' 
#
_entry.id    2P4Y 
#
_exptl.entry_id    2P4Y 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.76 
_cell.angle_gamma         90 
_cell.entry_id            2P4Y 
_cell.length_a            92.148 
_cell.length_b            59.859 
_cell.length_c            118.287 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2P4Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 372 n n 
C C2 TRS sing 373 n n 
C C3 TRS sing 374 n n 
C N TRS sing 375 n n 
C1 O1 TRS sing 376 n n 
C1 H11 TRS sing 377 n n 
C1 H12 TRS sing 378 n n 
C2 O2 TRS sing 379 n n 
C2 H21 TRS sing 380 n n 
C2 H22 TRS sing 381 n n 
C3 O3 TRS sing 382 n n 
C3 H31 TRS sing 383 n n 
C3 H32 TRS sing 384 n n 
N HN1 TRS sing 385 n n 
N HN2 TRS sing 386 n n 
N HN3 TRS sing 387 n n 
O1 HO1 TRS sing 388 n n 
O2 HO2 TRS sing 389 n n 
O3 HO3 TRS sing 390 n n 
#
_atom_sites.entry_id                     2P4Y 
_atom_sites.fract_transf_matrix[1][1]    0.010852 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002658 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C03 A 1 478 478 C03 C02 . 
D 3 TRS A 1 479 479 TRS TRI . 
E 2 C03 B 1 478 478 C03 C02 . 
F 4 HOH A 1 480 1001 HOH WAT . 
F 4 HOH A 2 481 1003 HOH WAT . 
F 4 HOH A 3 482 1005 HOH WAT . 
F 4 HOH A 4 483 1009 HOH WAT . 
F 4 HOH A 5 484 1010 HOH WAT . 
F 4 HOH A 6 485 1011 HOH WAT . 
F 4 HOH A 7 486 1012 HOH WAT . 
F 4 HOH A 8 487 1013 HOH WAT . 
F 4 HOH A 9 488 1015 HOH WAT . 
F 4 HOH A 10 489 1019 HOH WAT . 
F 4 HOH A 11 490 1020 HOH WAT . 
F 4 HOH A 12 491 1021 HOH WAT . 
F 4 HOH A 13 492 1022 HOH WAT . 
F 4 HOH A 14 493 1025 HOH WAT . 
F 4 HOH A 15 494 1026 HOH WAT . 
F 4 HOH A 16 495 1027 HOH WAT . 
F 4 HOH A 17 496 1029 HOH WAT . 
F 4 HOH A 18 497 1030 HOH WAT . 
F 4 HOH A 19 498 1031 HOH WAT . 
F 4 HOH A 20 499 1035 HOH WAT . 
F 4 HOH A 21 500 1038 HOH WAT . 
F 4 HOH A 22 501 1040 HOH WAT . 
F 4 HOH A 23 502 1041 HOH WAT . 
F 4 HOH A 24 503 1043 HOH WAT . 
F 4 HOH A 25 504 1045 HOH WAT . 
F 4 HOH A 26 505 1046 HOH WAT . 
F 4 HOH A 27 506 1047 HOH WAT . 
F 4 HOH A 28 507 1049 HOH WAT . 
F 4 HOH A 29 508 1050 HOH WAT . 
F 4 HOH A 30 509 1051 HOH WAT . 
F 4 HOH A 31 510 1054 HOH WAT . 
F 4 HOH A 32 511 1055 HOH WAT . 
F 4 HOH A 33 512 1056 HOH WAT . 
F 4 HOH A 34 513 1058 HOH WAT . 
F 4 HOH A 35 514 1059 HOH WAT . 
F 4 HOH A 36 515 1060 HOH WAT . 
F 4 HOH A 37 516 1061 HOH WAT . 
F 4 HOH A 38 517 1064 HOH WAT . 
F 4 HOH A 39 518 1065 HOH WAT . 
F 4 HOH A 40 519 1066 HOH WAT . 
F 4 HOH A 41 520 1067 HOH WAT . 
F 4 HOH A 42 521 1069 HOH WAT . 
F 4 HOH A 43 522 1071 HOH WAT . 
F 4 HOH A 44 523 1073 HOH WAT . 
F 4 HOH A 45 524 1075 HOH WAT . 
F 4 HOH A 46 525 1076 HOH WAT . 
F 4 HOH A 47 526 1082 HOH WAT . 
F 4 HOH A 48 527 1083 HOH WAT . 
F 4 HOH A 49 528 1084 HOH WAT . 
F 4 HOH A 50 529 1085 HOH WAT . 
F 4 HOH A 51 530 1087 HOH WAT . 
F 4 HOH A 52 531 1089 HOH WAT . 
F 4 HOH A 53 532 1093 HOH WAT . 
G 4 HOH B 1 479 1002 HOH WAT . 
G 4 HOH B 2 480 1004 HOH WAT . 
G 4 HOH B 3 481 1006 HOH WAT . 
G 4 HOH B 4 482 1007 HOH WAT . 
G 4 HOH B 5 483 1008 HOH WAT . 
G 4 HOH B 6 484 1014 HOH WAT . 
G 4 HOH B 7 485 1016 HOH WAT . 
G 4 HOH B 8 486 1017 HOH WAT . 
G 4 HOH B 9 487 1018 HOH WAT . 
G 4 HOH B 10 488 1023 HOH WAT . 
G 4 HOH B 11 489 1024 HOH WAT . 
G 4 HOH B 12 490 1028 HOH WAT . 
G 4 HOH B 13 491 1032 HOH WAT . 
G 4 HOH B 14 492 1033 HOH WAT . 
G 4 HOH B 15 493 1034 HOH WAT . 
G 4 HOH B 16 494 1036 HOH WAT . 
G 4 HOH B 17 495 1037 HOH WAT . 
G 4 HOH B 18 496 1039 HOH WAT . 
G 4 HOH B 19 497 1042 HOH WAT . 
G 4 HOH B 20 498 1044 HOH WAT . 
G 4 HOH B 21 499 1048 HOH WAT . 
G 4 HOH B 22 500 1052 HOH WAT . 
G 4 HOH B 23 501 1053 HOH WAT . 
G 4 HOH B 24 502 1057 HOH WAT . 
G 4 HOH B 25 503 1062 HOH WAT . 
G 4 HOH B 26 504 1063 HOH WAT . 
G 4 HOH B 27 505 1068 HOH WAT . 
G 4 HOH B 28 506 1070 HOH WAT . 
G 4 HOH B 29 507 1072 HOH WAT . 
G 4 HOH B 30 508 1074 HOH WAT . 
G 4 HOH B 31 509 1077 HOH WAT . 
G 4 HOH B 32 510 1078 HOH WAT . 
G 4 HOH B 33 511 1079 HOH WAT . 
G 4 HOH B 34 512 1080 HOH WAT . 
G 4 HOH B 35 513 1081 HOH WAT . 
G 4 HOH B 36 514 1086 HOH WAT . 
G 4 HOH B 37 515 1088 HOH WAT . 
G 4 HOH B 38 516 1090 HOH WAT . 
G 4 HOH B 39 517 1091 HOH WAT . 
G 4 HOH B 40 518 1092 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . D 3 20.248 7.6 20.235 1 63.73 ? C TRS 479 A 1 
HETATM 2 C C1 TRS . . . D 3 19.613 6.753 21.389 1 62.73 ? C1 TRS 479 A 1 
HETATM 3 C C2 TRS . . . D 3 20.185 9.107 20.54 1 64.41 ? C2 TRS 479 A 1 
HETATM 4 C C3 TRS . . . D 3 19.631 7.296 18.958 1 63.8 ? C3 TRS 479 A 1 
HETATM 5 N N TRS . . . D 3 21.669 7.248 20.133 1 65.42 ? N TRS 479 A 1 
HETATM 6 O O1 TRS . . . D 3 18.267 6.347 21.152 1 61.47 ? O1 TRS 479 A 1 
HETATM 7 O O2 TRS . . . D 3 20.772 9.872 19.491 1 63.1 ? O2 TRS 479 A 1 
HETATM 8 O O3 TRS . . . D 3 20.486 7.671 17.885 1 63.68 ? O3 TRS 479 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
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