data_2P55 # _model_server_result.job_id nv7Y3t0MBHx60LvPXiSkog _model_server_result.datetime_utc '2024-11-26 12:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":9001}' # _entry.id 2P55 # _exptl.entry_id 2P55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P55 _cell.length_a 81.634 _cell.length_b 81.634 _cell.length_c 129.086 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 122.451 70.697118 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 B MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 B MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 D O2A ATP . A ATP 9001 1_555 B MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc4 D O1B ATP . A ATP 9001 1_555 B MG MG . A MG 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2P55 _atom_sites.fract_transf_matrix[1][1] 0.01225 _atom_sites.fract_transf_matrix[1][2] 0.007072 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 9002 9002 MG MG . C 3 MRA A 1 9000 9000 MRA LIG . D 4 ATP A 1 9001 9001 ATP ATP . E 5 HOH A 1 9003 2 HOH HOH . E 5 HOH A 2 9004 3 HOH HOH . E 5 HOH A 3 9005 4 HOH HOH . E 5 HOH A 4 9006 5 HOH HOH . E 5 HOH A 5 9007 7 HOH HOH . E 5 HOH A 6 9008 15 HOH HOH . E 5 HOH A 7 9009 20 HOH HOH . E 5 HOH A 8 9010 22 HOH HOH . E 5 HOH A 9 9011 27 HOH HOH . E 5 HOH A 10 9012 31 HOH HOH . E 5 HOH A 11 9013 34 HOH HOH . E 5 HOH A 12 9014 36 HOH HOH . E 5 HOH A 13 9015 38 HOH HOH . E 5 HOH A 14 9016 42 HOH HOH . E 5 HOH A 15 9017 44 HOH HOH . E 5 HOH A 16 9018 45 HOH HOH . E 5 HOH A 17 9019 48 HOH HOH . E 5 HOH A 18 9020 52 HOH HOH . E 5 HOH A 19 9021 54 HOH HOH . E 5 HOH A 20 9022 65 HOH HOH . E 5 HOH A 21 9023 69 HOH HOH . E 5 HOH A 22 9024 72 HOH HOH . E 5 HOH A 23 9025 80 HOH HOH . E 5 HOH A 24 9026 82 HOH HOH . E 5 HOH A 25 9027 83 HOH HOH . E 5 HOH A 26 9028 91 HOH HOH . E 5 HOH A 27 9029 93 HOH HOH . E 5 HOH A 28 9030 103 HOH HOH . E 5 HOH A 29 9031 105 HOH HOH . E 5 HOH A 30 9032 109 HOH HOH . E 5 HOH A 31 9033 111 HOH HOH . E 5 HOH A 32 9034 115 HOH HOH . E 5 HOH A 33 9035 137 HOH HOH . E 5 HOH A 34 9036 138 HOH HOH . E 5 HOH A 35 9037 139 HOH HOH . E 5 HOH A 36 9038 140 HOH HOH . E 5 HOH A 37 9039 141 HOH HOH . E 5 HOH A 38 9040 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 53 36.132 -2.278 1 45.18 ? PG ATP 9001 A 1 HETATM 2 O O1G ATP . . . D 4 53.554 36.861 -1.084 1 46.46 ? O1G ATP 9001 A 1 HETATM 3 O O2G ATP . . . D 4 54.037 35.83 -3.307 1 46.05 ? O2G ATP 9001 A 1 HETATM 4 O O3G ATP . . . D 4 52.13 34.961 -1.922 1 46.79 ? O3G ATP 9001 A 1 HETATM 5 P PB ATP . . . D 4 51.011 36.983 -4.144 1 42.17 ? PB ATP 9001 A 1 HETATM 6 O O1B ATP . . . D 4 49.987 35.979 -3.69 1 43.43 ? O1B ATP 9001 A 1 HETATM 7 O O2B ATP . . . D 4 50.558 38.34 -4.606 1 43.73 ? O2B ATP 9001 A 1 HETATM 8 O O3B ATP . . . D 4 52.04 37.245 -2.933 1 45.21 ? O3B ATP 9001 A 1 HETATM 9 P PA ATP . . . D 4 51.321 35.575 -6.601 1 43.4 ? PA ATP 9001 A 1 HETATM 10 O O1A ATP . . . D 4 52.423 35.458 -7.615 1 45.13 ? O1A ATP 9001 A 1 HETATM 11 O O2A ATP . . . D 4 50.607 34.334 -6.147 1 43.83 ? O2A ATP 9001 A 1 HETATM 12 O O3A ATP . . . D 4 51.916 36.314 -5.297 1 43.67 ? O3A ATP 9001 A 1 HETATM 13 O O5' ATP . . . D 4 50.24 36.601 -7.201 1 46.16 ? O5' ATP 9001 A 1 HETATM 14 C C5' ATP . . . D 4 50.655 37.84 -7.768 1 48.22 ? C5' ATP 9001 A 1 HETATM 15 C C4' ATP . . . D 4 49.47 38.749 -8.087 1 49.4 ? C4' ATP 9001 A 1 HETATM 16 O O4' ATP . . . D 4 48.886 38.367 -9.336 1 49.57 ? O4' ATP 9001 A 1 HETATM 17 C C3' ATP . . . D 4 48.341 38.734 -7.061 1 49.83 ? C3' ATP 9001 A 1 HETATM 18 O O3' ATP . . . D 4 48.508 39.746 -6.08 1 50.32 ? O3' ATP 9001 A 1 HETATM 19 C C2' ATP . . . D 4 47.091 38.957 -7.889 1 49.73 ? C2' ATP 9001 A 1 HETATM 20 O O2' ATP . . . D 4 46.7 40.321 -7.875 1 49.56 ? O2' ATP 9001 A 1 HETATM 21 C C1' ATP . . . D 4 47.469 38.536 -9.298 1 49.57 ? C1' ATP 9001 A 1 HETATM 22 N N9 ATP . . . D 4 46.81 37.258 -9.65 1 49.36 ? N9 ATP 9001 A 1 HETATM 23 C C8 ATP . . . D 4 47.254 36.023 -9.352 1 49.18 ? C8 ATP 9001 A 1 HETATM 24 N N7 ATP . . . D 4 46.403 35.085 -9.831 1 48.92 ? N7 ATP 9001 A 1 HETATM 25 C C5 ATP . . . D 4 45.399 35.717 -10.443 1 49.15 ? C5 ATP 9001 A 1 HETATM 26 C C6 ATP . . . D 4 44.162 35.328 -11.163 1 48.96 ? C6 ATP 9001 A 1 HETATM 27 N N6 ATP . . . D 4 43.825 34.028 -11.322 1 48.25 ? N6 ATP 9001 A 1 HETATM 28 N N1 ATP . . . D 4 43.39 36.309 -11.646 1 48.87 ? N1 ATP 9001 A 1 HETATM 29 C C2 ATP . . . D 4 43.696 37.612 -11.497 1 48.92 ? C2 ATP 9001 A 1 HETATM 30 N N3 ATP . . . D 4 44.801 38.031 -10.857 1 48.94 ? N3 ATP 9001 A 1 HETATM 31 C C4 ATP . . . D 4 45.666 37.156 -10.324 1 49.31 ? C4 ATP 9001 A 1 HETATM 32 H "H5'1" ATP . . . D 4 51.231 37.652 -8.681 0 0 ? "H5'1" ATP 9001 A 1 HETATM 33 H "H5'2" ATP . . . D 4 51.335 38.352 -7.076 0 0 ? "H5'2" ATP 9001 A 1 HETATM 34 H H4' ATP . . . D 4 49.838 39.776 -8.18 0 0 ? H4' ATP 9001 A 1 HETATM 35 H H3' ATP . . . D 4 48.293 37.752 -6.576 0 0 ? H3' ATP 9001 A 1 HETATM 36 H HO3' ATP . . . D 4 49.207 39.465 -5.48 0 0 ? HO3' ATP 9001 A 1 HETATM 37 H H2' ATP . . . D 4 46.274 38.328 -7.514 0 0 ? H2' ATP 9001 A 1 HETATM 38 H HO2' ATP . . . D 4 46.526 40.572 -6.963 0 0 ? HO2' ATP 9001 A 1 HETATM 39 H H1' ATP . . . D 4 47.171 39.314 -10.009 0 0 ? H1' ATP 9001 A 1 HETATM 40 H H8 ATP . . . D 4 48.166 35.81 -8.803 0 0 ? H8 ATP 9001 A 1 HETATM 41 H HN61 ATP . . . D 4 44.429 33.294 -10.946 0 0 ? HN61 ATP 9001 A 1 HETATM 42 H HN62 ATP . . . D 4 42.966 33.78 -11.821 0 0 ? HN62 ATP 9001 A 1 HETATM 43 H H2 ATP . . . D 4 43.024 38.355 -11.914 0 0 ? H2 ATP 9001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #