data_2P56 # _model_server_result.job_id mFFX0maWZLz-3k1Y4_d_vA _model_server_result.datetime_utc '2024-11-15 00:59:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":289}' # _entry.id 2P56 # _exptl.entry_id 2P56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P56 _cell.length_a 112.396 _cell.length_b 112.396 _cell.length_c 58.799 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 112.396 112.396 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 112.396 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 112.396 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 2P56 _atom_sites.fract_transf_matrix[1][1] 0.008897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 286 1 EDO EDO . C 2 EDO A 1 287 2 EDO EDO . D 2 EDO A 1 288 3 EDO EDO . E 2 EDO A 1 289 4 EDO EDO . F 2 EDO A 1 290 5 EDO EDO . G 3 HOH A 1 400 400 HOH WAT . G 3 HOH A 2 401 401 HOH WAT . G 3 HOH A 3 402 402 HOH WAT . G 3 HOH A 4 403 403 HOH WAT . G 3 HOH A 5 404 404 HOH WAT . G 3 HOH A 6 405 405 HOH WAT . G 3 HOH A 7 406 406 HOH WAT . G 3 HOH A 8 407 407 HOH WAT . G 3 HOH A 9 408 408 HOH WAT . G 3 HOH A 10 409 409 HOH WAT . G 3 HOH A 11 410 410 HOH WAT . G 3 HOH A 12 411 411 HOH WAT . G 3 HOH A 13 412 412 HOH WAT . G 3 HOH A 14 413 413 HOH WAT . G 3 HOH A 15 414 414 HOH WAT . G 3 HOH A 16 415 415 HOH WAT . G 3 HOH A 17 416 416 HOH WAT . G 3 HOH A 18 417 417 HOH WAT . G 3 HOH A 19 418 418 HOH WAT . G 3 HOH A 20 419 419 HOH WAT . G 3 HOH A 21 420 420 HOH WAT . G 3 HOH A 22 421 421 HOH WAT . G 3 HOH A 23 422 422 HOH WAT . G 3 HOH A 24 423 423 HOH WAT . G 3 HOH A 25 424 424 HOH WAT . G 3 HOH A 26 425 425 HOH WAT . G 3 HOH A 27 426 426 HOH WAT . G 3 HOH A 28 427 427 HOH WAT . G 3 HOH A 29 428 428 HOH WAT . G 3 HOH A 30 429 429 HOH WAT . G 3 HOH A 31 430 430 HOH WAT . G 3 HOH A 32 432 432 HOH WAT . G 3 HOH A 33 433 433 HOH WAT . G 3 HOH A 34 434 434 HOH WAT . G 3 HOH A 35 435 435 HOH WAT . G 3 HOH A 36 436 436 HOH WAT . G 3 HOH A 37 437 437 HOH WAT . G 3 HOH A 38 438 438 HOH WAT . G 3 HOH A 39 439 439 HOH WAT . G 3 HOH A 40 440 440 HOH WAT . G 3 HOH A 41 441 441 HOH WAT . G 3 HOH A 42 442 442 HOH WAT . G 3 HOH A 43 443 443 HOH WAT . G 3 HOH A 44 444 444 HOH WAT . G 3 HOH A 45 445 445 HOH WAT . G 3 HOH A 46 446 446 HOH WAT . G 3 HOH A 47 447 447 HOH WAT . G 3 HOH A 48 448 448 HOH WAT . G 3 HOH A 49 449 449 HOH WAT . G 3 HOH A 50 450 450 HOH WAT . G 3 HOH A 51 451 451 HOH WAT . G 3 HOH A 52 452 452 HOH WAT . G 3 HOH A 53 453 453 HOH WAT . G 3 HOH A 54 454 454 HOH WAT . G 3 HOH A 55 455 455 HOH WAT . G 3 HOH A 56 456 456 HOH WAT . G 3 HOH A 57 457 457 HOH WAT . G 3 HOH A 58 458 458 HOH WAT . G 3 HOH A 59 459 459 HOH WAT . G 3 HOH A 60 460 460 HOH WAT . G 3 HOH A 61 461 461 HOH WAT . G 3 HOH A 62 462 462 HOH WAT . G 3 HOH A 63 464 464 HOH WAT . G 3 HOH A 64 465 465 HOH WAT . G 3 HOH A 65 466 466 HOH WAT . G 3 HOH A 66 467 467 HOH WAT . G 3 HOH A 67 468 468 HOH WAT . G 3 HOH A 68 469 469 HOH WAT . G 3 HOH A 69 470 470 HOH WAT . G 3 HOH A 70 471 471 HOH WAT . G 3 HOH A 71 473 473 HOH WAT . G 3 HOH A 72 474 474 HOH WAT . G 3 HOH A 73 475 475 HOH WAT . G 3 HOH A 74 476 476 HOH WAT . G 3 HOH A 75 477 477 HOH WAT . G 3 HOH A 76 478 478 HOH WAT . G 3 HOH A 77 479 479 HOH WAT . G 3 HOH A 78 480 480 HOH WAT . G 3 HOH A 79 481 481 HOH WAT . G 3 HOH A 80 482 482 HOH WAT . G 3 HOH A 81 483 483 HOH WAT . G 3 HOH A 82 484 484 HOH WAT . G 3 HOH A 83 485 485 HOH WAT . G 3 HOH A 84 486 486 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 33.37 41.756 24.475 1 52.16 ? C1 EDO 289 A 1 HETATM 2 O O1 EDO . . . E 2 33.113 41.604 23.063 1 57.88 ? O1 EDO 289 A 1 HETATM 3 C C2 EDO . . . E 2 33.342 43.202 24.835 1 48.74 ? C2 EDO 289 A 1 HETATM 4 O O2 EDO . . . E 2 32.013 43.789 24.928 1 50.25 ? O2 EDO 289 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #