data_2P59 # _model_server_result.job_id sxVRYjWK9VB1VYofTm-kdQ _model_server_result.datetime_utc '2025-04-27 14:01:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1208}' # _entry.id 2P59 # _exptl.entry_id 2P59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 727.891 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3AS,7AS)-1-[(2S)-2-{[(2S)-2-CYCLOHEXYL-2-({[(2R)-4-NITRO-2H-PYRROL-2-YL]CARBONYL}AMINO)ACETYL]AMINO}-3,3-DIMETHYLBUTANOYL]-N-{(1S)-1-[(1R)-2-(CYCLOPROPYLAMINO)-1-HYDROXY-2-OXOETHYL]BUTYL}OCTAHYDRO-1H-INDOLE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P59 _cell.length_a 225.87 _cell.length_b 225.87 _cell.length_c 75.71 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 123 1_555 A SG CYS 99 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? disulf ? disulf2 A SG CYS 99 A CYS 125 1_555 A SG CYS 145 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? disulf ? disulf3 B SG CYS 97 B CYS 1123 1_555 B SG CYS 99 B CYS 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? # _chem_comp.formula 'C37 H57 N7 O8' _chem_comp.formula_weight 727.891 _chem_comp.id GG4 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3AS,7AS)-1-[(2S)-2-{[(2S)-2-CYCLOHEXYL-2-({[(2R)-4-NITRO-2H-PYRROL-2-YL]CARBONYL}AMINO)ACETYL]AMINO}-3,3-DIMETHYLBUTANOYL]-N-{(1S)-1-[(1R)-2-(CYCLOPROPYLAMINO)-1-HYDROXY-2-OXOETHYL]BUTYL}OCTAHYDRO-1H-INDOLE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C19 GG4 sing 83 n n C1 C25 GG4 sing 84 n n C1 C2 GG4 sing 85 n n C1 H1 GG4 sing 86 n n C2 N5 GG4 sing 87 n n C2 C27 GG4 sing 88 n n C2 H2 GG4 sing 89 n n C3 C16 GG4 sing 90 n n C3 C5 GG4 sing 91 n n C3 H31A GG4 sing 92 n n C3 H32 GG4 sing 93 n n C4 N1 GG4 sing 94 n n C4 C7 GG4 sing 95 n n C4 C28 GG4 sing 96 n n C4 H4 GG4 sing 97 n n C5 C17 GG4 sing 98 n n C5 H51 GG4 sing 99 n n C5 H52 GG4 sing 100 n n C6 C12 GG4 sing 101 n n C6 C17 GG4 sing 102 n n C6 H61 GG4 sing 103 n n C6 H62 GG4 sing 104 n n O1 N7 GG4 sing 105 n n C7 C28 GG4 sing 106 n n C7 H71 GG4 sing 107 n n C7 H72 GG4 sing 108 n n C8 C17 GG4 sing 109 n n C8 C13 GG4 sing 110 n n C8 N3 GG4 sing 111 n n C8 H8 GG4 sing 112 n n C9 C14 GG4 sing 113 n n C9 N4 GG4 sing 114 n n C9 C18 GG4 sing 115 n n C9 H9 GG4 sing 116 n n C10 C19 GG4 sing 117 n n C10 C15 GG4 sing 118 n n C10 N5 GG4 sing 119 n n C10 H10 GG4 sing 120 n n C11 C26 GG4 sing 121 n n C11 N6 GG4 sing 122 n n C11 C20 GG4 sing 123 n n C11 H11 GG4 sing 124 n n C12 C16 GG4 sing 125 n n C12 H121 GG4 sing 126 n n C12 H122 GG4 sing 127 n n C13 N4 GG4 sing 128 n n C13 O6 GG4 doub 129 n n O2 C26 GG4 sing 130 n n O2 HO2 GG4 sing 131 n n O3 N7 GG4 doub 132 n n C14 N5 GG4 sing 133 n n C14 O7 GG4 doub 134 n n N1 C32 GG4 sing 135 n n N1 HN1 GG4 sing 136 n n C15 N6 GG4 sing 137 n n C15 O8 GG4 doub 138 n n C16 H161 GG4 sing 139 n n C16 H162 GG4 sing 140 n n C17 H17 GG4 sing 141 n n C18 C22 GG4 sing 142 n n C18 C23 GG4 sing 143 n n C18 C21 GG4 sing 144 n n C19 H191 GG4 sing 145 n n C19 H192 GG4 sing 146 n n C20 C24 GG4 sing 147 n n C20 H201 GG4 sing 148 n n C20 H202 GG4 sing 149 n n C21 H211 GG4 sing 150 n n C21 H212 GG4 sing 151 n n C21 H213 GG4 sing 152 n n N4 HN4 GG4 sing 153 n n N2 C36 GG4 sing 154 n n N2 C31 GG4 doub 155 n n C22 H221 GG4 sing 156 n n C22 H222 GG4 sing 157 n n C22 H223 GG4 sing 158 n n C23 H231 GG4 sing 159 n n C23 H232 GG4 sing 160 n n C23 H233 GG4 sing 161 n n C24 C33 GG4 sing 162 n n C24 H241 GG4 sing 163 n n C24 H242 GG4 sing 164 n n C25 C30 GG4 sing 165 n n C25 H251 GG4 sing 166 n n C25 H252 GG4 sing 167 n n C26 C32 GG4 sing 168 n n C26 H26 GG4 sing 169 n n C27 C29 GG4 sing 170 n n C27 H271 GG4 sing 171 n n C27 H272 GG4 sing 172 n n C28 H281 GG4 sing 173 n n C28 H282 GG4 sing 174 n n N3 C41 GG4 sing 175 n n N3 HN3 GG4 sing 176 n n O10 C32 GG4 doub 177 n n N6 HN6 GG4 sing 178 n n C33 H331 GG4 sing 179 n n C33 H332 GG4 sing 180 n n C33 H333 GG4 sing 181 n n O12 C41 GG4 doub 182 n n C41 C36 GG4 sing 183 n n C29 C30 GG4 sing 184 n n C29 H291 GG4 sing 185 n n C29 H292 GG4 sing 186 n n C30 H301 GG4 sing 187 n n C30 H302 GG4 sing 188 n n C31 C35 GG4 sing 189 n n C31 H31 GG4 sing 190 n n C36 C34 GG4 sing 191 n n C36 H36 GG4 sing 192 n n C34 C35 GG4 doub 193 n n C34 H34 GG4 sing 194 n n C35 N7 GG4 sing 195 n n # _atom_sites.entry_id 2P59 _atom_sites.fract_transf_matrix[1][1] 0.004427 _atom_sites.fract_transf_matrix[1][2] 0.002556 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id GG4 _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1208 _pdbx_nonpoly_scheme.auth_seq_num 1165 _pdbx_nonpoly_scheme.pdb_mon_id GG4 _pdbx_nonpoly_scheme.auth_mon_id GG4 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GG4 . . . E 3 84.404 76.135 48.926 1 76.68 ? C1 GG4 1208 B 1 HETATM 2 C C2 GG4 . . . E 3 83.674 76.034 50.301 1 76.4 ? C2 GG4 1208 B 1 HETATM 3 C C3 GG4 . . . E 3 76.118 75.671 49.757 1 73.82 ? C3 GG4 1208 B 1 HETATM 4 C C4 GG4 . . . E 3 90.306 68.687 49.865 1 64.91 ? C4 GG4 1208 B 1 HETATM 5 C C5 GG4 . . . E 3 76.755 75.776 51.155 1 74.38 ? C5 GG4 1208 B 1 HETATM 6 C C6 GG4 . . . E 3 79.146 75.766 49.996 1 74.05 ? C6 GG4 1208 B 1 HETATM 7 O O1 GG4 . . . E 3 78.513 80.522 58.613 1 90.19 ? O1 GG4 1208 B 1 HETATM 8 C C7 GG4 . . . E 3 91.253 69.79 50.501 1 65.09 ? C7 GG4 1208 B 1 HETATM 9 C C8 GG4 . . . E 3 78.88 75.739 52.517 1 78.77 ? C8 GG4 1208 B 1 HETATM 10 C C9 GG4 . . . E 3 82.381 74.39 52.599 1 77.81 ? C9 GG4 1208 B 1 HETATM 11 C C10 GG4 . . . E 3 84.507 73.637 49.303 1 75.7 ? C10 GG4 1208 B 1 HETATM 12 C C11 GG4 . . . E 3 85.963 70.046 50.016 1 66.37 ? C11 GG4 1208 B 1 HETATM 13 C C12 GG4 . . . E 3 78.445 75.715 48.631 1 73.38 ? C12 GG4 1208 B 1 HETATM 14 C C13 GG4 . . . E 3 80.398 75.934 52.5 1 79.06 ? C13 GG4 1208 B 1 HETATM 15 O O2 GG4 . . . E 3 87.616 70.871 48.221 1 65.01 ? O2 GG4 1208 B 1 HETATM 16 O O3 GG4 . . . E 3 78.594 81 56.302 1 90.6 ? O3 GG4 1208 B 1 HETATM 17 C C14 GG4 . . . E 3 83.123 73.511 51.586 1 77.2 ? C14 GG4 1208 B 1 HETATM 18 N N1 GG4 . . . E 3 89.183 69.21 49.052 1 65.1 ? N1 GG4 1208 B 1 HETATM 19 C C15 GG4 . . . E 3 85.533 72.626 49.879 1 74.32 ? C15 GG4 1208 B 1 HETATM 20 C C16 GG4 . . . E 3 77.063 75.014 48.723 1 73.41 ? C16 GG4 1208 B 1 HETATM 21 O O6 GG4 . . . E 3 80.921 77.013 52.822 1 79.89 ? O6 GG4 1208 B 1 HETATM 22 C C17 GG4 . . . E 3 78.245 76.171 51.177 1 76.1 ? C17 GG4 1208 B 1 HETATM 23 C C18 GG4 . . . E 3 82.7 74.276 54.177 1 78.18 ? C18 GG4 1208 B 1 HETATM 24 C C19 GG4 . . . E 3 85.192 74.853 48.662 1 75.93 ? C19 GG4 1208 B 1 HETATM 25 C C20 GG4 . . . E 3 85.151 68.849 50.537 1 65.49 ? C20 GG4 1208 B 1 HETATM 26 C C21 GG4 . . . E 3 82.424 75.635 54.93 1 76.88 ? C21 GG4 1208 B 1 HETATM 27 N N4 GG4 . . . E 3 81.05 74.81 52.105 1 78.43 ? N4 GG4 1208 B 1 HETATM 28 O O7 GG4 . . . E 3 83.228 72.282 51.747 1 75.32 ? O7 GG4 1208 B 1 HETATM 29 O O8 GG4 . . . E 3 86.626 73.013 50.361 1 73.48 ? O8 GG4 1208 B 1 HETATM 30 N N2 GG4 . . . E 3 77.976 76.397 57.361 1 85.81 ? N2 GG4 1208 B 1 HETATM 31 C C22 GG4 . . . E 3 84.258 73.993 54.344 1 76.75 ? C22 GG4 1208 B 1 HETATM 32 C C23 GG4 . . . E 3 81.771 73.106 54.821 1 77.45 ? C23 GG4 1208 B 1 HETATM 33 C C24 GG4 . . . E 3 84.1 69.203 51.575 1 65.22 ? C24 GG4 1208 B 1 HETATM 34 C C25 GG4 . . . E 3 85.016 77.535 48.684 1 75.71 ? C25 GG4 1208 B 1 HETATM 35 C C26 GG4 . . . E 3 86.865 69.657 48.737 1 62.68 ? C26 GG4 1208 B 1 HETATM 36 C C27 GG4 . . . E 3 84.612 76.414 51.464 1 76.14 ? C27 GG4 1208 B 1 HETATM 37 C C28 GG4 . . . E 3 90.453 69.404 51.279 1 64.44 ? C28 GG4 1208 B 1 HETATM 38 N N3 GG4 . . . E 3 78.216 76.274 53.712 1 81.7 ? N3 GG4 1208 B 1 HETATM 39 O O10 GG4 . . . E 3 87.607 67.681 49.715 1 64.41 ? O10 GG4 1208 B 1 HETATM 40 N N5 GG4 . . . E 3 83.67 74.381 50.391 1 76.69 ? N5 GG4 1208 B 1 HETATM 41 N N6 GG4 . . . E 3 85.109 71.271 49.807 1 69.5 ? N6 GG4 1208 B 1 HETATM 42 C C32 GG4 . . . E 3 87.918 68.756 49.213 1 63.73 ? C32 GG4 1208 B 1 HETATM 43 C C33 GG4 . . . E 3 84.782 69.151 52.926 1 66.7 ? C33 GG4 1208 B 1 HETATM 44 O O12 GG4 . . . E 3 78.766 74.542 55.195 1 85.67 ? O12 GG4 1208 B 1 HETATM 45 C C41 GG4 . . . E 3 78.477 75.733 54.974 1 84.72 ? C41 GG4 1208 B 1 HETATM 46 C C29 GG4 . . . E 3 85.712 77.472 51.144 1 75.24 ? C29 GG4 1208 B 1 HETATM 47 C C30 GG4 . . . E 3 85.336 78.372 49.948 1 75.13 ? C30 GG4 1208 B 1 HETATM 48 C C31 GG4 . . . E 3 78.005 77.638 58.04 1 87.14 ? C31 GG4 1208 B 1 HETATM 49 C C36 GG4 . . . E 3 78.38 76.672 56.02 1 86.04 ? C36 GG4 1208 B 1 HETATM 50 C C34 GG4 . . . E 3 78.692 78.079 55.783 1 87.43 ? C34 GG4 1208 B 1 HETATM 51 C C35 GG4 . . . E 3 78.438 78.68 57.088 1 88.81 ? C35 GG4 1208 B 1 HETATM 52 N N7 GG4 . . . E 3 78.528 80.181 57.332 1 89.39 ? N7 GG4 1208 B 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #