data_2P5C # _model_server_result.job_id cM_HXuoySRSkw_uNAqlfYg _model_server_result.datetime_utc '2025-03-06 21:15:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2P5C # _exptl.entry_id 2P5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P5C _cell.length_a 105.729 _cell.length_b 105.729 _cell.length_c 139.513 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2P5C _atom_sites.fract_transf_matrix[1][1] 0.009458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 1301 301 SAH SAH . D 3 GOL B 1 401 401 GOL GOL . E 3 GOL B 1 402 402 GOL GOL . F 3 GOL B 1 403 403 GOL GOL . G 4 HOH A 1 1302 1 HOH HOH . G 4 HOH A 2 1303 2 HOH HOH . G 4 HOH A 3 1304 5 HOH HOH . G 4 HOH A 4 1305 6 HOH HOH . G 4 HOH A 5 1306 8 HOH HOH . G 4 HOH A 6 1307 14 HOH HOH . G 4 HOH A 7 1308 15 HOH HOH . G 4 HOH A 8 1309 18 HOH HOH . G 4 HOH A 9 1310 24 HOH HOH . G 4 HOH A 10 1311 26 HOH HOH . G 4 HOH A 11 1312 27 HOH HOH . G 4 HOH A 12 1313 28 HOH HOH . G 4 HOH A 13 1314 29 HOH HOH . G 4 HOH A 14 1315 30 HOH HOH . G 4 HOH A 15 1316 31 HOH HOH . G 4 HOH A 16 1317 32 HOH HOH . G 4 HOH A 17 1318 35 HOH HOH . G 4 HOH A 18 1319 39 HOH HOH . G 4 HOH A 19 1320 43 HOH HOH . G 4 HOH A 20 1321 46 HOH HOH . G 4 HOH A 21 1322 49 HOH HOH . G 4 HOH A 22 1323 51 HOH HOH . G 4 HOH A 23 1324 52 HOH HOH . G 4 HOH A 24 1325 54 HOH HOH . G 4 HOH A 25 1326 55 HOH HOH . G 4 HOH A 26 1327 57 HOH HOH . G 4 HOH A 27 1328 59 HOH HOH . G 4 HOH A 28 1329 64 HOH HOH . G 4 HOH A 29 1330 67 HOH HOH . G 4 HOH A 30 1331 69 HOH HOH . G 4 HOH A 31 1332 73 HOH HOH . G 4 HOH A 32 1333 74 HOH HOH . G 4 HOH A 33 1334 78 HOH HOH . G 4 HOH A 34 1335 79 HOH HOH . G 4 HOH A 35 1336 83 HOH HOH . G 4 HOH A 36 1337 84 HOH HOH . G 4 HOH A 37 1338 86 HOH HOH . G 4 HOH A 38 1339 88 HOH HOH . G 4 HOH A 39 1340 89 HOH HOH . G 4 HOH A 40 1341 90 HOH HOH . G 4 HOH A 41 1342 94 HOH HOH . G 4 HOH A 42 1343 98 HOH HOH . G 4 HOH A 43 1344 99 HOH HOH . G 4 HOH A 44 1345 100 HOH HOH . G 4 HOH A 45 1346 102 HOH HOH . G 4 HOH A 46 1347 103 HOH HOH . G 4 HOH A 47 1348 105 HOH HOH . G 4 HOH A 48 1349 106 HOH HOH . G 4 HOH A 49 1350 111 HOH HOH . G 4 HOH A 50 1351 112 HOH HOH . G 4 HOH A 51 1352 114 HOH HOH . G 4 HOH A 52 1353 119 HOH HOH . G 4 HOH A 53 1354 120 HOH HOH . G 4 HOH A 54 1355 121 HOH HOH . G 4 HOH A 55 1356 124 HOH HOH . G 4 HOH A 56 1357 126 HOH HOH . G 4 HOH A 57 1358 128 HOH HOH . G 4 HOH A 58 1359 129 HOH HOH . G 4 HOH A 59 1360 130 HOH HOH . G 4 HOH A 60 1361 132 HOH HOH . G 4 HOH A 61 1362 133 HOH HOH . G 4 HOH A 62 1363 134 HOH HOH . G 4 HOH A 63 1364 135 HOH HOH . G 4 HOH A 64 1365 136 HOH HOH . G 4 HOH A 65 1366 137 HOH HOH . G 4 HOH A 66 1367 138 HOH HOH . G 4 HOH A 67 1368 142 HOH HOH . G 4 HOH A 68 1369 143 HOH HOH . G 4 HOH A 69 1370 151 HOH HOH . G 4 HOH A 70 1371 152 HOH HOH . G 4 HOH A 71 1372 158 HOH HOH . G 4 HOH A 72 1373 159 HOH HOH . G 4 HOH A 73 1374 161 HOH HOH . G 4 HOH A 74 1375 163 HOH HOH . G 4 HOH A 75 1376 165 HOH HOH . G 4 HOH A 76 1377 168 HOH HOH . G 4 HOH A 77 1378 170 HOH HOH . G 4 HOH A 78 1379 171 HOH HOH . G 4 HOH A 79 1380 173 HOH HOH . G 4 HOH A 80 1381 174 HOH HOH . G 4 HOH A 81 1382 175 HOH HOH . G 4 HOH A 82 1383 176 HOH HOH . G 4 HOH A 83 1384 178 HOH HOH . G 4 HOH A 84 1385 179 HOH HOH . G 4 HOH A 85 1386 180 HOH HOH . G 4 HOH A 86 1387 186 HOH HOH . G 4 HOH A 87 1388 189 HOH HOH . G 4 HOH A 88 1389 193 HOH HOH . G 4 HOH A 89 1390 194 HOH HOH . G 4 HOH A 90 1391 198 HOH HOH . G 4 HOH A 91 1392 200 HOH HOH . G 4 HOH A 92 1393 203 HOH HOH . G 4 HOH A 93 1394 206 HOH HOH . G 4 HOH A 94 1395 207 HOH HOH . G 4 HOH A 95 1396 208 HOH HOH . G 4 HOH A 96 1397 209 HOH HOH . G 4 HOH A 97 1398 212 HOH HOH . G 4 HOH A 98 1399 215 HOH HOH . G 4 HOH A 99 1400 219 HOH HOH . G 4 HOH A 100 1401 221 HOH HOH . G 4 HOH A 101 1402 222 HOH HOH . G 4 HOH A 102 1403 225 HOH HOH . G 4 HOH A 103 1404 226 HOH HOH . G 4 HOH A 104 1405 227 HOH HOH . G 4 HOH A 105 1406 229 HOH HOH . G 4 HOH A 106 1407 230 HOH HOH . G 4 HOH A 107 1408 232 HOH HOH . G 4 HOH A 108 1409 234 HOH HOH . G 4 HOH A 109 1410 237 HOH HOH . G 4 HOH A 110 1411 240 HOH HOH . G 4 HOH A 111 1412 242 HOH HOH . G 4 HOH A 112 1413 254 HOH HOH . G 4 HOH A 113 1414 255 HOH HOH . G 4 HOH A 114 1415 256 HOH HOH . G 4 HOH A 115 1416 258 HOH HOH . G 4 HOH A 116 1417 259 HOH HOH . G 4 HOH A 117 1418 260 HOH HOH . G 4 HOH A 118 1419 261 HOH HOH . G 4 HOH A 119 1420 262 HOH HOH . G 4 HOH A 120 1421 263 HOH HOH . G 4 HOH A 121 1422 265 HOH HOH . G 4 HOH A 122 1423 266 HOH HOH . G 4 HOH A 123 1424 267 HOH HOH . G 4 HOH A 124 1425 268 HOH HOH . G 4 HOH A 125 1426 269 HOH HOH . G 4 HOH A 126 1427 270 HOH HOH . G 4 HOH A 127 1428 271 HOH HOH . G 4 HOH A 128 1429 274 HOH HOH . G 4 HOH A 129 1430 278 HOH HOH . G 4 HOH A 130 1431 281 HOH HOH . G 4 HOH A 131 1432 282 HOH HOH . G 4 HOH A 132 1433 283 HOH HOH . G 4 HOH A 133 1434 288 HOH HOH . G 4 HOH A 134 1435 289 HOH HOH . G 4 HOH A 135 1436 290 HOH HOH . G 4 HOH A 136 1437 291 HOH HOH . G 4 HOH A 137 1438 292 HOH HOH . G 4 HOH A 138 1439 293 HOH HOH . G 4 HOH A 139 1440 294 HOH HOH . G 4 HOH A 140 1441 295 HOH HOH . G 4 HOH A 141 1442 297 HOH HOH . G 4 HOH A 142 1443 298 HOH HOH . G 4 HOH A 143 1444 302 HOH HOH . G 4 HOH A 144 1445 303 HOH HOH . H 4 HOH B 1 404 3 HOH HOH . H 4 HOH B 2 405 4 HOH HOH . H 4 HOH B 3 406 7 HOH HOH . H 4 HOH B 4 407 9 HOH HOH . H 4 HOH B 5 408 10 HOH HOH . H 4 HOH B 6 409 11 HOH HOH . H 4 HOH B 7 410 12 HOH HOH . H 4 HOH B 8 411 13 HOH HOH . H 4 HOH B 9 412 16 HOH HOH . H 4 HOH B 10 413 17 HOH HOH . H 4 HOH B 11 414 19 HOH HOH . H 4 HOH B 12 415 20 HOH HOH . H 4 HOH B 13 416 21 HOH HOH . H 4 HOH B 14 417 22 HOH HOH . H 4 HOH B 15 418 23 HOH HOH . H 4 HOH B 16 419 25 HOH HOH . H 4 HOH B 17 420 33 HOH HOH . H 4 HOH B 18 421 34 HOH HOH . H 4 HOH B 19 422 36 HOH HOH . H 4 HOH B 20 423 37 HOH HOH . H 4 HOH B 21 424 38 HOH HOH . H 4 HOH B 22 425 40 HOH HOH . H 4 HOH B 23 426 41 HOH HOH . H 4 HOH B 24 427 42 HOH HOH . H 4 HOH B 25 428 44 HOH HOH . H 4 HOH B 26 429 45 HOH HOH . H 4 HOH B 27 430 47 HOH HOH . H 4 HOH B 28 431 48 HOH HOH . H 4 HOH B 29 432 50 HOH HOH . H 4 HOH B 30 433 53 HOH HOH . H 4 HOH B 31 434 56 HOH HOH . H 4 HOH B 32 435 58 HOH HOH . H 4 HOH B 33 436 60 HOH HOH . H 4 HOH B 34 437 61 HOH HOH . H 4 HOH B 35 438 62 HOH HOH . H 4 HOH B 36 439 63 HOH HOH . H 4 HOH B 37 440 65 HOH HOH . H 4 HOH B 38 441 66 HOH HOH . H 4 HOH B 39 442 68 HOH HOH . H 4 HOH B 40 443 70 HOH HOH . H 4 HOH B 41 444 71 HOH HOH . H 4 HOH B 42 445 72 HOH HOH . H 4 HOH B 43 446 75 HOH HOH . H 4 HOH B 44 447 76 HOH HOH . H 4 HOH B 45 448 77 HOH HOH . H 4 HOH B 46 449 80 HOH HOH . H 4 HOH B 47 450 81 HOH HOH . H 4 HOH B 48 451 82 HOH HOH . H 4 HOH B 49 452 85 HOH HOH . H 4 HOH B 50 453 87 HOH HOH . H 4 HOH B 51 454 91 HOH HOH . H 4 HOH B 52 455 92 HOH HOH . H 4 HOH B 53 456 93 HOH HOH . H 4 HOH B 54 457 95 HOH HOH . H 4 HOH B 55 458 96 HOH HOH . H 4 HOH B 56 459 97 HOH HOH . H 4 HOH B 57 460 101 HOH HOH . H 4 HOH B 58 461 104 HOH HOH . H 4 HOH B 59 462 107 HOH HOH . H 4 HOH B 60 463 108 HOH HOH . H 4 HOH B 61 464 109 HOH HOH . H 4 HOH B 62 465 110 HOH HOH . H 4 HOH B 63 466 113 HOH HOH . H 4 HOH B 64 467 115 HOH HOH . H 4 HOH B 65 468 116 HOH HOH . H 4 HOH B 66 469 117 HOH HOH . H 4 HOH B 67 470 118 HOH HOH . H 4 HOH B 68 471 122 HOH HOH . H 4 HOH B 69 472 123 HOH HOH . H 4 HOH B 70 473 125 HOH HOH . H 4 HOH B 71 474 127 HOH HOH . H 4 HOH B 72 475 131 HOH HOH . H 4 HOH B 73 476 139 HOH HOH . H 4 HOH B 74 477 140 HOH HOH . H 4 HOH B 75 478 141 HOH HOH . H 4 HOH B 76 479 144 HOH HOH . H 4 HOH B 77 480 145 HOH HOH . H 4 HOH B 78 481 146 HOH HOH . H 4 HOH B 79 482 147 HOH HOH . H 4 HOH B 80 483 148 HOH HOH . H 4 HOH B 81 484 149 HOH HOH . H 4 HOH B 82 485 150 HOH HOH . H 4 HOH B 83 486 153 HOH HOH . H 4 HOH B 84 487 154 HOH HOH . H 4 HOH B 85 488 155 HOH HOH . H 4 HOH B 86 489 156 HOH HOH . H 4 HOH B 87 490 157 HOH HOH . H 4 HOH B 88 491 160 HOH HOH . H 4 HOH B 89 492 162 HOH HOH . H 4 HOH B 90 493 164 HOH HOH . H 4 HOH B 91 494 166 HOH HOH . H 4 HOH B 92 495 167 HOH HOH . H 4 HOH B 93 496 169 HOH HOH . H 4 HOH B 94 497 172 HOH HOH . H 4 HOH B 95 498 177 HOH HOH . H 4 HOH B 96 499 181 HOH HOH . H 4 HOH B 97 500 182 HOH HOH . H 4 HOH B 98 501 183 HOH HOH . H 4 HOH B 99 502 184 HOH HOH . H 4 HOH B 100 503 185 HOH HOH . H 4 HOH B 101 504 187 HOH HOH . H 4 HOH B 102 505 188 HOH HOH . H 4 HOH B 103 506 190 HOH HOH . H 4 HOH B 104 507 191 HOH HOH . H 4 HOH B 105 508 192 HOH HOH . H 4 HOH B 106 509 195 HOH HOH . H 4 HOH B 107 510 196 HOH HOH . H 4 HOH B 108 511 197 HOH HOH . H 4 HOH B 109 512 199 HOH HOH . H 4 HOH B 110 513 201 HOH HOH . H 4 HOH B 111 514 202 HOH HOH . H 4 HOH B 112 515 204 HOH HOH . H 4 HOH B 113 516 205 HOH HOH . H 4 HOH B 114 517 210 HOH HOH . H 4 HOH B 115 518 211 HOH HOH . H 4 HOH B 116 519 213 HOH HOH . H 4 HOH B 117 520 214 HOH HOH . H 4 HOH B 118 521 216 HOH HOH . H 4 HOH B 119 522 217 HOH HOH . H 4 HOH B 120 523 218 HOH HOH . H 4 HOH B 121 524 220 HOH HOH . H 4 HOH B 122 525 223 HOH HOH . H 4 HOH B 123 526 224 HOH HOH . H 4 HOH B 124 527 228 HOH HOH . H 4 HOH B 125 528 231 HOH HOH . H 4 HOH B 126 529 233 HOH HOH . H 4 HOH B 127 530 235 HOH HOH . H 4 HOH B 128 531 236 HOH HOH . H 4 HOH B 129 532 238 HOH HOH . H 4 HOH B 130 533 239 HOH HOH . H 4 HOH B 131 534 241 HOH HOH . H 4 HOH B 132 535 243 HOH HOH . H 4 HOH B 133 536 244 HOH HOH . H 4 HOH B 134 537 245 HOH HOH . H 4 HOH B 135 538 246 HOH HOH . H 4 HOH B 136 539 247 HOH HOH . H 4 HOH B 137 540 248 HOH HOH . H 4 HOH B 138 541 249 HOH HOH . H 4 HOH B 139 542 250 HOH HOH . H 4 HOH B 140 543 251 HOH HOH . H 4 HOH B 141 544 252 HOH HOH . H 4 HOH B 142 545 253 HOH HOH . H 4 HOH B 143 546 257 HOH HOH . H 4 HOH B 144 547 264 HOH HOH . H 4 HOH B 145 548 272 HOH HOH . H 4 HOH B 146 549 273 HOH HOH . H 4 HOH B 147 550 275 HOH HOH . H 4 HOH B 148 551 276 HOH HOH . H 4 HOH B 149 552 277 HOH HOH . H 4 HOH B 150 553 279 HOH HOH . H 4 HOH B 151 554 280 HOH HOH . H 4 HOH B 152 555 284 HOH HOH . H 4 HOH B 153 556 285 HOH HOH . H 4 HOH B 154 557 286 HOH HOH . H 4 HOH B 155 558 287 HOH HOH . H 4 HOH B 156 559 296 HOH HOH . H 4 HOH B 157 560 299 HOH HOH . H 4 HOH B 158 561 300 HOH HOH . H 4 HOH B 159 562 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 48.683 111.649 92.154 1 82.81 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . D 3 47.549 110.773 92.134 1 83.26 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . D 3 49.173 111.902 90.721 1 82.24 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . D 3 48.124 112.494 89.954 1 81.66 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . D 3 50.387 112.841 90.727 1 82.95 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . D 3 51.461 112.26 91.475 1 83.19 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #