data_2P5R # _model_server_result.job_id YTzFd9HvR5FlkRyeHY28jA _model_server_result.datetime_utc '2025-01-03 09:27:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p5r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 2P5R # _exptl.entry_id 2P5R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2P5R _cell.length_a 71.58 _cell.length_b 71.58 _cell.length_c 117.82 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P5R _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 A CYS 44 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 44 B CYS 44 1_555 B SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O HIS 13 A HIS 13 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc2 A OD1 ASP 26 A ASP 26 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc3 A OD2 ASP 26 A ASP 26 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 A OD2 ASP 26 A ASP 26 6_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc5 A OG SER 28 A SER 28 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc6 A OE1 GLU 78 A GLU 78 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc7 A OD2 ASP 148 A ASP 148 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc8 A OD1 ASP 148 A ASP 148 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc9 C CA CA . A CA 301 1_555 H O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc10 C CA CA . A CA 301 1_555 H O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc11 C CA CA . A CA 301 1_555 H O HOH . A HOH 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc12 D CA CA . A CA 302 1_555 H O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc13 D CA CA . A CA 302 1_555 H O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc14 D CA CA . A CA 302 1_555 B OE1 GLU 22 B GLU 22 5_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc15 D CA CA . A CA 302 1_555 B OD2 ASP 103 B ASP 103 5_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc16 D CA CA . A CA 302 1_555 B OD1 ASP 103 B ASP 103 5_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc17 E CA CA . A CA 303 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc18 E CA CA . A CA 303 1_555 H O HOH . A HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc19 E CA CA . A CA 303 1_555 H O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc20 E CA CA . A CA 303 1_555 B O THR 153 B THR 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc21 F CA CA . A CA 305 1_555 H O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc22 B OD1 ASP 106 B ASP 106 1_555 G CA CA . B CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc23 G CA CA . B CA 304 1_555 I O HOH . B HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc24 G CA CA . B CA 304 1_555 I O HOH . B HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.392 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2P5R _atom_sites.fract_transf_matrix[1][1] 0.01397 _atom_sites.fract_transf_matrix[1][2] 0.008066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 301 CA CA . D 2 CA A 1 302 302 CA CA . E 2 CA A 1 303 303 CA CA . F 2 CA A 1 305 305 CA CA . G 2 CA B 1 304 304 CA CA . H 3 HOH A 1 306 1 HOH HOH . H 3 HOH A 2 307 2 HOH HOH . H 3 HOH A 3 308 3 HOH HOH . H 3 HOH A 4 309 4 HOH HOH . H 3 HOH A 5 310 5 HOH HOH . H 3 HOH A 6 311 6 HOH HOH . H 3 HOH A 7 312 7 HOH HOH . H 3 HOH A 8 313 8 HOH HOH . H 3 HOH A 9 314 9 HOH HOH . H 3 HOH A 10 315 10 HOH HOH . H 3 HOH A 11 316 11 HOH HOH . H 3 HOH A 12 317 12 HOH HOH . H 3 HOH A 13 318 13 HOH HOH . H 3 HOH A 14 319 14 HOH HOH . H 3 HOH A 15 320 15 HOH HOH . H 3 HOH A 16 321 16 HOH HOH . H 3 HOH A 17 322 17 HOH HOH . H 3 HOH A 18 323 18 HOH HOH . H 3 HOH A 19 324 19 HOH HOH . H 3 HOH A 20 325 20 HOH HOH . H 3 HOH A 21 326 21 HOH HOH . H 3 HOH A 22 327 22 HOH HOH . H 3 HOH A 23 328 23 HOH HOH . H 3 HOH A 24 329 24 HOH HOH . H 3 HOH A 25 330 25 HOH HOH . H 3 HOH A 26 331 26 HOH HOH . H 3 HOH A 27 332 27 HOH HOH . H 3 HOH A 28 333 28 HOH HOH . H 3 HOH A 29 334 29 HOH HOH . H 3 HOH A 30 335 30 HOH HOH . H 3 HOH A 31 336 31 HOH HOH . H 3 HOH A 32 337 32 HOH HOH . H 3 HOH A 33 338 33 HOH HOH . H 3 HOH A 34 339 34 HOH HOH . H 3 HOH A 35 340 35 HOH HOH . H 3 HOH A 36 341 36 HOH HOH . H 3 HOH A 37 342 37 HOH HOH . H 3 HOH A 38 343 38 HOH HOH . H 3 HOH A 39 344 39 HOH HOH . H 3 HOH A 40 345 40 HOH HOH . H 3 HOH A 41 346 41 HOH HOH . H 3 HOH A 42 347 42 HOH HOH . H 3 HOH A 43 348 43 HOH HOH . H 3 HOH A 44 349 44 HOH HOH . H 3 HOH A 45 350 45 HOH HOH . H 3 HOH A 46 351 46 HOH HOH . H 3 HOH A 47 352 47 HOH HOH . H 3 HOH A 48 353 48 HOH HOH . H 3 HOH A 49 354 49 HOH HOH . H 3 HOH A 50 355 50 HOH HOH . H 3 HOH A 51 356 51 HOH HOH . H 3 HOH A 52 357 52 HOH HOH . H 3 HOH A 53 358 54 HOH HOH . H 3 HOH A 54 359 55 HOH HOH . H 3 HOH A 55 360 56 HOH HOH . H 3 HOH A 56 361 57 HOH HOH . H 3 HOH A 57 362 58 HOH HOH . H 3 HOH A 58 363 59 HOH HOH . H 3 HOH A 59 364 60 HOH HOH . H 3 HOH A 60 365 62 HOH HOH . H 3 HOH A 61 366 63 HOH HOH . H 3 HOH A 62 367 64 HOH HOH . H 3 HOH A 63 368 90 HOH HOH . H 3 HOH A 64 369 109 HOH HOH . H 3 HOH A 65 370 110 HOH HOH . H 3 HOH A 66 371 111 HOH HOH . H 3 HOH A 67 372 123 HOH HOH . H 3 HOH A 68 373 126 HOH HOH . H 3 HOH A 69 374 132 HOH HOH . H 3 HOH A 70 375 133 HOH HOH . H 3 HOH A 71 376 134 HOH HOH . H 3 HOH A 72 377 135 HOH HOH . H 3 HOH A 73 378 137 HOH HOH . H 3 HOH A 74 379 139 HOH HOH . H 3 HOH A 75 380 140 HOH HOH . H 3 HOH A 76 381 141 HOH HOH . H 3 HOH A 77 382 142 HOH HOH . H 3 HOH A 78 383 143 HOH HOH . H 3 HOH A 79 384 144 HOH HOH . H 3 HOH A 80 385 145 HOH HOH . H 3 HOH A 81 386 146 HOH HOH . H 3 HOH A 82 387 147 HOH HOH . H 3 HOH A 83 388 148 HOH HOH . H 3 HOH A 84 389 149 HOH HOH . H 3 HOH A 85 390 150 HOH HOH . H 3 HOH A 86 391 151 HOH HOH . H 3 HOH A 87 392 152 HOH HOH . H 3 HOH A 88 393 153 HOH HOH . H 3 HOH A 89 394 154 HOH HOH . H 3 HOH A 90 395 155 HOH HOH . H 3 HOH A 91 396 156 HOH HOH . H 3 HOH A 92 397 157 HOH HOH . H 3 HOH A 93 398 158 HOH HOH . H 3 HOH A 94 399 159 HOH HOH . H 3 HOH A 95 400 160 HOH HOH . H 3 HOH A 96 401 161 HOH HOH . H 3 HOH A 97 402 162 HOH HOH . H 3 HOH A 98 403 163 HOH HOH . H 3 HOH A 99 404 164 HOH HOH . H 3 HOH A 100 405 165 HOH HOH . H 3 HOH A 101 406 166 HOH HOH . H 3 HOH A 102 407 167 HOH HOH . H 3 HOH A 103 408 169 HOH HOH . H 3 HOH A 104 409 170 HOH HOH . H 3 HOH A 105 410 171 HOH HOH . H 3 HOH A 106 411 172 HOH HOH . H 3 HOH A 107 412 173 HOH HOH . H 3 HOH A 108 413 174 HOH HOH . H 3 HOH A 109 414 175 HOH HOH . H 3 HOH A 110 415 176 HOH HOH . H 3 HOH A 111 416 177 HOH HOH . H 3 HOH A 112 417 180 HOH HOH . H 3 HOH A 113 418 181 HOH HOH . H 3 HOH A 114 419 183 HOH HOH . H 3 HOH A 115 420 184 HOH HOH . H 3 HOH A 116 421 185 HOH HOH . H 3 HOH A 117 422 186 HOH HOH . H 3 HOH A 118 423 189 HOH HOH . H 3 HOH A 119 424 190 HOH HOH . H 3 HOH A 120 425 191 HOH HOH . H 3 HOH A 121 426 192 HOH HOH . H 3 HOH A 122 427 195 HOH HOH . H 3 HOH A 123 428 196 HOH HOH . H 3 HOH A 124 429 197 HOH HOH . H 3 HOH A 125 430 198 HOH HOH . H 3 HOH A 126 431 199 HOH HOH . H 3 HOH A 127 432 200 HOH HOH . H 3 HOH A 128 433 201 HOH HOH . H 3 HOH A 129 434 202 HOH HOH . H 3 HOH A 130 435 203 HOH HOH . H 3 HOH A 131 436 204 HOH HOH . H 3 HOH A 132 437 206 HOH HOH . H 3 HOH A 133 438 207 HOH HOH . H 3 HOH A 134 439 215 HOH HOH . H 3 HOH A 135 440 219 HOH HOH . H 3 HOH A 136 441 220 HOH HOH . H 3 HOH A 137 442 221 HOH HOH . I 3 HOH B 1 305 53 HOH HOH . I 3 HOH B 2 306 61 HOH HOH . I 3 HOH B 3 307 65 HOH HOH . I 3 HOH B 4 308 66 HOH HOH . I 3 HOH B 5 309 67 HOH HOH . I 3 HOH B 6 310 68 HOH HOH . I 3 HOH B 7 311 69 HOH HOH . I 3 HOH B 8 312 70 HOH HOH . I 3 HOH B 9 313 71 HOH HOH . I 3 HOH B 10 314 72 HOH HOH . I 3 HOH B 11 315 73 HOH HOH . I 3 HOH B 12 316 74 HOH HOH . I 3 HOH B 13 317 75 HOH HOH . I 3 HOH B 14 318 76 HOH HOH . I 3 HOH B 15 319 77 HOH HOH . I 3 HOH B 16 320 78 HOH HOH . I 3 HOH B 17 321 79 HOH HOH . I 3 HOH B 18 322 80 HOH HOH . I 3 HOH B 19 323 81 HOH HOH . I 3 HOH B 20 324 82 HOH HOH . I 3 HOH B 21 325 83 HOH HOH . I 3 HOH B 22 326 84 HOH HOH . I 3 HOH B 23 327 85 HOH HOH . I 3 HOH B 24 328 86 HOH HOH . I 3 HOH B 25 329 87 HOH HOH . I 3 HOH B 26 330 88 HOH HOH . I 3 HOH B 27 331 89 HOH HOH . I 3 HOH B 28 332 91 HOH HOH . I 3 HOH B 29 333 92 HOH HOH . I 3 HOH B 30 334 93 HOH HOH . I 3 HOH B 31 335 94 HOH HOH . I 3 HOH B 32 336 95 HOH HOH . I 3 HOH B 33 337 96 HOH HOH . I 3 HOH B 34 338 97 HOH HOH . I 3 HOH B 35 339 98 HOH HOH . I 3 HOH B 36 340 99 HOH HOH . I 3 HOH B 37 341 100 HOH HOH . I 3 HOH B 38 342 101 HOH HOH . I 3 HOH B 39 343 102 HOH HOH . I 3 HOH B 40 344 103 HOH HOH . I 3 HOH B 41 345 104 HOH HOH . I 3 HOH B 42 346 105 HOH HOH . I 3 HOH B 43 347 106 HOH HOH . I 3 HOH B 44 348 107 HOH HOH . I 3 HOH B 45 349 108 HOH HOH . I 3 HOH B 46 350 112 HOH HOH . I 3 HOH B 47 351 113 HOH HOH . I 3 HOH B 48 352 114 HOH HOH . I 3 HOH B 49 353 115 HOH HOH . I 3 HOH B 50 354 116 HOH HOH . I 3 HOH B 51 355 117 HOH HOH . I 3 HOH B 52 356 118 HOH HOH . I 3 HOH B 53 357 119 HOH HOH . I 3 HOH B 54 358 120 HOH HOH . I 3 HOH B 55 359 121 HOH HOH . I 3 HOH B 56 360 122 HOH HOH . I 3 HOH B 57 361 124 HOH HOH . I 3 HOH B 58 362 125 HOH HOH . I 3 HOH B 59 363 127 HOH HOH . I 3 HOH B 60 364 128 HOH HOH . I 3 HOH B 61 365 129 HOH HOH . I 3 HOH B 62 366 130 HOH HOH . I 3 HOH B 63 367 131 HOH HOH . I 3 HOH B 64 368 136 HOH HOH . I 3 HOH B 65 369 138 HOH HOH . I 3 HOH B 66 370 168 HOH HOH . I 3 HOH B 67 371 178 HOH HOH . I 3 HOH B 68 372 179 HOH HOH . I 3 HOH B 69 373 182 HOH HOH . I 3 HOH B 70 374 187 HOH HOH . I 3 HOH B 71 375 188 HOH HOH . I 3 HOH B 72 376 193 HOH HOH . I 3 HOH B 73 377 194 HOH HOH . I 3 HOH B 74 378 205 HOH HOH . I 3 HOH B 75 379 208 HOH HOH . I 3 HOH B 76 380 209 HOH HOH . I 3 HOH B 77 381 210 HOH HOH . I 3 HOH B 78 382 211 HOH HOH . I 3 HOH B 79 383 212 HOH HOH . I 3 HOH B 80 384 213 HOH HOH . I 3 HOH B 81 385 214 HOH HOH . I 3 HOH B 82 386 216 HOH HOH . I 3 HOH B 83 387 217 HOH HOH . I 3 HOH B 84 388 218 HOH HOH . I 3 HOH B 85 389 222 HOH HOH . I 3 HOH B 86 390 223 HOH HOH . I 3 HOH B 87 391 224 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.107 _atom_site.Cartn_y 42.061 _atom_site.Cartn_z -20.835 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #