data_2P5X # _model_server_result.job_id 1POmnLMjY8IOZz96omrxxA _model_server_result.datetime_utc '2024-12-06 05:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2P5X # _exptl.entry_id 2P5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P5X _cell.length_a 84.802 _cell.length_b 116.983 _cell.length_c 51.471 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 2P5X _atom_sites.fract_transf_matrix[1][1] 0.011792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 2 PO4 PO4 . D 2 PO4 B 1 301 1 PO4 PO4 . E 3 HOH A 1 302 3 HOH HOH . E 3 HOH A 2 303 4 HOH HOH . E 3 HOH A 3 304 6 HOH HOH . E 3 HOH A 4 305 7 HOH HOH . E 3 HOH A 5 306 8 HOH HOH . E 3 HOH A 6 307 9 HOH HOH . E 3 HOH A 7 308 10 HOH HOH . E 3 HOH A 8 309 11 HOH HOH . E 3 HOH A 9 310 12 HOH HOH . E 3 HOH A 10 311 18 HOH HOH . E 3 HOH A 11 312 19 HOH HOH . E 3 HOH A 12 313 21 HOH HOH . E 3 HOH A 13 314 24 HOH HOH . E 3 HOH A 14 315 25 HOH HOH . E 3 HOH A 15 316 27 HOH HOH . E 3 HOH A 16 317 28 HOH HOH . E 3 HOH A 17 318 29 HOH HOH . E 3 HOH A 18 319 30 HOH HOH . E 3 HOH A 19 320 32 HOH HOH . E 3 HOH A 20 321 34 HOH HOH . E 3 HOH A 21 322 38 HOH HOH . E 3 HOH A 22 323 42 HOH HOH . E 3 HOH A 23 324 43 HOH HOH . E 3 HOH A 24 325 44 HOH HOH . E 3 HOH A 25 326 46 HOH HOH . E 3 HOH A 26 327 48 HOH HOH . E 3 HOH A 27 328 49 HOH HOH . E 3 HOH A 28 329 51 HOH HOH . E 3 HOH A 29 330 52 HOH HOH . E 3 HOH A 30 331 53 HOH HOH . E 3 HOH A 31 332 58 HOH HOH . E 3 HOH A 32 333 59 HOH HOH . E 3 HOH A 33 334 61 HOH HOH . E 3 HOH A 34 335 64 HOH HOH . E 3 HOH A 35 336 65 HOH HOH . E 3 HOH A 36 337 66 HOH HOH . E 3 HOH A 37 338 67 HOH HOH . E 3 HOH A 38 339 68 HOH HOH . E 3 HOH A 39 340 70 HOH HOH . E 3 HOH A 40 341 71 HOH HOH . E 3 HOH A 41 342 72 HOH HOH . E 3 HOH A 42 343 73 HOH HOH . E 3 HOH A 43 344 74 HOH HOH . E 3 HOH A 44 345 77 HOH HOH . E 3 HOH A 45 346 78 HOH HOH . E 3 HOH A 46 347 79 HOH HOH . E 3 HOH A 47 348 81 HOH HOH . E 3 HOH A 48 349 82 HOH HOH . E 3 HOH A 49 350 83 HOH HOH . E 3 HOH A 50 351 84 HOH HOH . E 3 HOH A 51 352 85 HOH HOH . E 3 HOH A 52 353 86 HOH HOH . E 3 HOH A 53 354 87 HOH HOH . E 3 HOH A 54 355 88 HOH HOH . E 3 HOH A 55 356 89 HOH HOH . E 3 HOH A 56 357 90 HOH HOH . E 3 HOH A 57 358 91 HOH HOH . E 3 HOH A 58 359 92 HOH HOH . E 3 HOH A 59 360 93 HOH HOH . E 3 HOH A 60 361 94 HOH HOH . E 3 HOH A 61 362 95 HOH HOH . E 3 HOH A 62 363 98 HOH HOH . E 3 HOH A 63 364 101 HOH HOH . E 3 HOH A 64 365 103 HOH HOH . E 3 HOH A 65 366 104 HOH HOH . E 3 HOH A 66 367 106 HOH HOH . E 3 HOH A 67 368 107 HOH HOH . E 3 HOH A 68 369 108 HOH HOH . E 3 HOH A 69 370 110 HOH HOH . E 3 HOH A 70 371 113 HOH HOH . E 3 HOH A 71 372 114 HOH HOH . E 3 HOH A 72 373 116 HOH HOH . E 3 HOH A 73 374 117 HOH HOH . E 3 HOH A 74 375 118 HOH HOH . E 3 HOH A 75 376 119 HOH HOH . E 3 HOH A 76 377 121 HOH HOH . E 3 HOH A 77 378 124 HOH HOH . E 3 HOH A 78 379 125 HOH HOH . E 3 HOH A 79 380 128 HOH HOH . E 3 HOH A 80 381 129 HOH HOH . E 3 HOH A 81 382 131 HOH HOH . E 3 HOH A 82 383 132 HOH HOH . E 3 HOH A 83 384 135 HOH HOH . E 3 HOH A 84 385 142 HOH HOH . E 3 HOH A 85 386 143 HOH HOH . E 3 HOH A 86 387 145 HOH HOH . E 3 HOH A 87 388 147 HOH HOH . E 3 HOH A 88 389 148 HOH HOH . E 3 HOH A 89 390 151 HOH HOH . E 3 HOH A 90 391 152 HOH HOH . E 3 HOH A 91 392 153 HOH HOH . E 3 HOH A 92 393 155 HOH HOH . E 3 HOH A 93 394 156 HOH HOH . E 3 HOH A 94 395 159 HOH HOH . E 3 HOH A 95 396 162 HOH HOH . E 3 HOH A 96 397 163 HOH HOH . E 3 HOH A 97 398 166 HOH HOH . E 3 HOH A 98 399 167 HOH HOH . E 3 HOH A 99 400 168 HOH HOH . E 3 HOH A 100 401 169 HOH HOH . E 3 HOH A 101 402 170 HOH HOH . E 3 HOH A 102 403 172 HOH HOH . E 3 HOH A 103 404 175 HOH HOH . E 3 HOH A 104 405 180 HOH HOH . E 3 HOH A 105 406 181 HOH HOH . E 3 HOH A 106 407 182 HOH HOH . E 3 HOH A 107 408 184 HOH HOH . E 3 HOH A 108 409 185 HOH HOH . E 3 HOH A 109 410 187 HOH HOH . E 3 HOH A 110 411 189 HOH HOH . E 3 HOH A 111 412 190 HOH HOH . E 3 HOH A 112 413 191 HOH HOH . E 3 HOH A 113 414 193 HOH HOH . E 3 HOH A 114 415 195 HOH HOH . E 3 HOH A 115 416 197 HOH HOH . E 3 HOH A 116 417 199 HOH HOH . E 3 HOH A 117 418 204 HOH HOH . E 3 HOH A 118 419 205 HOH HOH . E 3 HOH A 119 420 210 HOH HOH . E 3 HOH A 120 421 212 HOH HOH . E 3 HOH A 121 422 214 HOH HOH . E 3 HOH A 122 423 215 HOH HOH . E 3 HOH A 123 424 217 HOH HOH . E 3 HOH A 124 425 222 HOH HOH . E 3 HOH A 125 426 225 HOH HOH . E 3 HOH A 126 427 227 HOH HOH . E 3 HOH A 127 428 230 HOH HOH . E 3 HOH A 128 429 232 HOH HOH . E 3 HOH A 129 430 233 HOH HOH . E 3 HOH A 130 431 241 HOH HOH . E 3 HOH A 131 432 242 HOH HOH . E 3 HOH A 132 433 243 HOH HOH . E 3 HOH A 133 434 244 HOH HOH . E 3 HOH A 134 435 246 HOH HOH . E 3 HOH A 135 436 247 HOH HOH . E 3 HOH A 136 437 249 HOH HOH . E 3 HOH A 137 438 251 HOH HOH . E 3 HOH A 138 439 252 HOH HOH . E 3 HOH A 139 440 253 HOH HOH . E 3 HOH A 140 441 254 HOH HOH . E 3 HOH A 141 442 256 HOH HOH . E 3 HOH A 142 443 257 HOH HOH . E 3 HOH A 143 444 258 HOH HOH . E 3 HOH A 144 445 262 HOH HOH . E 3 HOH A 145 446 263 HOH HOH . E 3 HOH A 146 447 264 HOH HOH . E 3 HOH A 147 448 266 HOH HOH . E 3 HOH A 148 449 268 HOH HOH . E 3 HOH A 149 450 271 HOH HOH . E 3 HOH A 150 451 272 HOH HOH . E 3 HOH A 151 452 275 HOH HOH . E 3 HOH A 152 453 276 HOH HOH . E 3 HOH A 153 454 278 HOH HOH . E 3 HOH A 154 455 281 HOH HOH . E 3 HOH A 155 456 284 HOH HOH . E 3 HOH A 156 457 285 HOH HOH . E 3 HOH A 157 458 287 HOH HOH . E 3 HOH A 158 459 288 HOH HOH . E 3 HOH A 159 460 291 HOH HOH . E 3 HOH A 160 461 293 HOH HOH . E 3 HOH A 161 462 296 HOH HOH . E 3 HOH A 162 463 299 HOH HOH . E 3 HOH A 163 464 307 HOH HOH . E 3 HOH A 164 465 308 HOH HOH . E 3 HOH A 165 466 309 HOH HOH . E 3 HOH A 166 467 310 HOH HOH . E 3 HOH A 167 468 311 HOH HOH . E 3 HOH A 168 469 314 HOH HOH . E 3 HOH A 169 470 316 HOH HOH . E 3 HOH A 170 471 317 HOH HOH . E 3 HOH A 171 472 318 HOH HOH . E 3 HOH A 172 473 319 HOH HOH . E 3 HOH A 173 474 320 HOH HOH . E 3 HOH A 174 475 321 HOH HOH . E 3 HOH A 175 476 322 HOH HOH . E 3 HOH A 176 477 325 HOH HOH . E 3 HOH A 177 478 326 HOH HOH . E 3 HOH A 178 479 327 HOH HOH . E 3 HOH A 179 480 330 HOH HOH . E 3 HOH A 180 481 335 HOH HOH . E 3 HOH A 181 482 336 HOH HOH . E 3 HOH A 182 483 337 HOH HOH . F 3 HOH B 1 302 1 HOH HOH . F 3 HOH B 2 303 2 HOH HOH . F 3 HOH B 3 304 5 HOH HOH . F 3 HOH B 4 305 13 HOH HOH . F 3 HOH B 5 306 14 HOH HOH . F 3 HOH B 6 307 15 HOH HOH . F 3 HOH B 7 308 16 HOH HOH . F 3 HOH B 8 309 17 HOH HOH . F 3 HOH B 9 310 20 HOH HOH . F 3 HOH B 10 311 22 HOH HOH . F 3 HOH B 11 312 23 HOH HOH . F 3 HOH B 12 313 26 HOH HOH . F 3 HOH B 13 314 31 HOH HOH . F 3 HOH B 14 315 33 HOH HOH . F 3 HOH B 15 316 35 HOH HOH . F 3 HOH B 16 317 36 HOH HOH . F 3 HOH B 17 318 37 HOH HOH . F 3 HOH B 18 319 39 HOH HOH . F 3 HOH B 19 320 40 HOH HOH . F 3 HOH B 20 321 41 HOH HOH . F 3 HOH B 21 322 45 HOH HOH . F 3 HOH B 22 323 47 HOH HOH . F 3 HOH B 23 324 50 HOH HOH . F 3 HOH B 24 325 54 HOH HOH . F 3 HOH B 25 326 55 HOH HOH . F 3 HOH B 26 327 56 HOH HOH . F 3 HOH B 27 328 57 HOH HOH . F 3 HOH B 28 329 62 HOH HOH . F 3 HOH B 29 330 63 HOH HOH . F 3 HOH B 30 331 69 HOH HOH . F 3 HOH B 31 332 75 HOH HOH . F 3 HOH B 32 333 76 HOH HOH . F 3 HOH B 33 334 80 HOH HOH . F 3 HOH B 34 335 96 HOH HOH . F 3 HOH B 35 336 97 HOH HOH . F 3 HOH B 36 337 99 HOH HOH . F 3 HOH B 37 338 100 HOH HOH . F 3 HOH B 38 339 102 HOH HOH . F 3 HOH B 39 340 105 HOH HOH . F 3 HOH B 40 341 109 HOH HOH . F 3 HOH B 41 342 112 HOH HOH . F 3 HOH B 42 343 115 HOH HOH . F 3 HOH B 43 344 120 HOH HOH . F 3 HOH B 44 345 122 HOH HOH . F 3 HOH B 45 346 123 HOH HOH . F 3 HOH B 46 347 126 HOH HOH . F 3 HOH B 47 348 127 HOH HOH . F 3 HOH B 48 349 130 HOH HOH . F 3 HOH B 49 350 133 HOH HOH . F 3 HOH B 50 351 134 HOH HOH . F 3 HOH B 51 352 136 HOH HOH . F 3 HOH B 52 353 137 HOH HOH . F 3 HOH B 53 354 138 HOH HOH . F 3 HOH B 54 355 139 HOH HOH . F 3 HOH B 55 356 140 HOH HOH . F 3 HOH B 56 357 141 HOH HOH . F 3 HOH B 57 358 144 HOH HOH . F 3 HOH B 58 359 146 HOH HOH . F 3 HOH B 59 360 149 HOH HOH . F 3 HOH B 60 361 150 HOH HOH . F 3 HOH B 61 362 154 HOH HOH . F 3 HOH B 62 363 160 HOH HOH . F 3 HOH B 63 364 161 HOH HOH . F 3 HOH B 64 365 164 HOH HOH . F 3 HOH B 65 366 165 HOH HOH . F 3 HOH B 66 367 171 HOH HOH . F 3 HOH B 67 368 173 HOH HOH . F 3 HOH B 68 369 174 HOH HOH . F 3 HOH B 69 370 176 HOH HOH . F 3 HOH B 70 371 177 HOH HOH . F 3 HOH B 71 372 178 HOH HOH . F 3 HOH B 72 373 179 HOH HOH . F 3 HOH B 73 374 183 HOH HOH . F 3 HOH B 74 375 186 HOH HOH . F 3 HOH B 75 376 188 HOH HOH . F 3 HOH B 76 377 192 HOH HOH . F 3 HOH B 77 378 194 HOH HOH . F 3 HOH B 78 379 196 HOH HOH . F 3 HOH B 79 380 198 HOH HOH . F 3 HOH B 80 381 200 HOH HOH . F 3 HOH B 81 382 201 HOH HOH . F 3 HOH B 82 383 202 HOH HOH . F 3 HOH B 83 384 203 HOH HOH . F 3 HOH B 84 385 206 HOH HOH . F 3 HOH B 85 386 207 HOH HOH . F 3 HOH B 86 387 208 HOH HOH . F 3 HOH B 87 388 209 HOH HOH . F 3 HOH B 88 389 211 HOH HOH . F 3 HOH B 89 390 213 HOH HOH . F 3 HOH B 90 391 216 HOH HOH . F 3 HOH B 91 392 218 HOH HOH . F 3 HOH B 92 393 219 HOH HOH . F 3 HOH B 93 394 220 HOH HOH . F 3 HOH B 94 395 221 HOH HOH . F 3 HOH B 95 396 223 HOH HOH . F 3 HOH B 96 397 224 HOH HOH . F 3 HOH B 97 398 226 HOH HOH . F 3 HOH B 98 399 228 HOH HOH . F 3 HOH B 99 400 229 HOH HOH . F 3 HOH B 100 401 231 HOH HOH . F 3 HOH B 101 402 234 HOH HOH . F 3 HOH B 102 403 235 HOH HOH . F 3 HOH B 103 404 236 HOH HOH . F 3 HOH B 104 405 237 HOH HOH . F 3 HOH B 105 406 238 HOH HOH . F 3 HOH B 106 407 239 HOH HOH . F 3 HOH B 107 408 240 HOH HOH . F 3 HOH B 108 409 245 HOH HOH . F 3 HOH B 109 410 248 HOH HOH . F 3 HOH B 110 411 250 HOH HOH . F 3 HOH B 111 412 255 HOH HOH . F 3 HOH B 112 413 259 HOH HOH . F 3 HOH B 113 414 260 HOH HOH . F 3 HOH B 114 415 261 HOH HOH . F 3 HOH B 115 416 265 HOH HOH . F 3 HOH B 116 417 267 HOH HOH . F 3 HOH B 117 418 269 HOH HOH . F 3 HOH B 118 419 270 HOH HOH . F 3 HOH B 119 420 273 HOH HOH . F 3 HOH B 120 421 274 HOH HOH . F 3 HOH B 121 422 277 HOH HOH . F 3 HOH B 122 423 279 HOH HOH . F 3 HOH B 123 424 280 HOH HOH . F 3 HOH B 124 425 282 HOH HOH . F 3 HOH B 125 426 283 HOH HOH . F 3 HOH B 126 427 286 HOH HOH . F 3 HOH B 127 428 289 HOH HOH . F 3 HOH B 128 429 290 HOH HOH . F 3 HOH B 129 430 292 HOH HOH . F 3 HOH B 130 431 294 HOH HOH . F 3 HOH B 131 432 295 HOH HOH . F 3 HOH B 132 433 297 HOH HOH . F 3 HOH B 133 434 298 HOH HOH . F 3 HOH B 134 435 300 HOH HOH . F 3 HOH B 135 436 301 HOH HOH . F 3 HOH B 136 437 302 HOH HOH . F 3 HOH B 137 438 303 HOH HOH . F 3 HOH B 138 439 304 HOH HOH . F 3 HOH B 139 440 305 HOH HOH . F 3 HOH B 140 441 306 HOH HOH . F 3 HOH B 141 442 313 HOH HOH . F 3 HOH B 142 443 315 HOH HOH . F 3 HOH B 143 444 323 HOH HOH . F 3 HOH B 144 445 324 HOH HOH . F 3 HOH B 145 446 328 HOH HOH . F 3 HOH B 146 447 331 HOH HOH . F 3 HOH B 147 448 332 HOH HOH . F 3 HOH B 148 449 333 HOH HOH . F 3 HOH B 149 450 338 HOH HOH . F 3 HOH B 150 451 339 HOH HOH . F 3 HOH B 151 452 340 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 53.239 -5.215 57.718 1 53.14 ? P PO4 301 B 1 HETATM 2 O O1 PO4 . . . D 2 54.696 -5.617 57.749 1 52.88 ? O1 PO4 301 B 1 HETATM 3 O O2 PO4 . . . D 2 53.049 -4.596 56.362 1 52.06 ? O2 PO4 301 B 1 HETATM 4 O O3 PO4 . . . D 2 52.337 -6.418 57.921 1 51.86 ? O3 PO4 301 B 1 HETATM 5 O O4 PO4 . . . D 2 52.937 -4.142 58.746 1 53.82 ? O4 PO4 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #