data_2P69 # _model_server_result.job_id W8QrS0OChXACwz0SrLFDgw _model_server_result.datetime_utc '2024-11-18 12:46:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":305}' # _entry.id 2P69 # _exptl.entry_id 2P69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P69 _cell.length_a 54.559 _cell.length_b 54.559 _cell.length_c 212.537 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 93 A CYS 91 1_555 A SG CYS 223 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? covale ? covale1 A C TYR 219 A TYR 217 1_555 A N MSE 220 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 220 A MSE 218 1_555 A N PHE 221 A PHE 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 236 A LEU 234 1_555 A N MSE 237 A MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 237 A MSE 235 1_555 A N VAL 238 A VAL 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C GLY 253 A GLY 251 1_555 A N MSE 254 A MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 254 A MSE 252 1_555 A N THR 255 A THR 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OD1 ASP 27 A ASP 25 1_555 B CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc2 A OD2 ASP 27 A ASP 25 1_555 B CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A O ASP 29 A ASP 27 1_555 B CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A OD1 ASP 240 A ASP 238 1_555 B CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 B CA CA . A CA 305 1_555 C O3P PLP . A PLP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 B CA CA . A CA 305 1_555 D O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc7 B CA CA . A CA 305 1_555 D O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2P69 _atom_sites.fract_transf_matrix[1][1] 0.018329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 305 301 CA CA . C 3 PLP A 1 306 300 PLP PLP . D 4 HOH A 1 307 2 HOH HOH . D 4 HOH A 2 308 5 HOH HOH . D 4 HOH A 3 309 6 HOH HOH . D 4 HOH A 4 310 7 HOH HOH . D 4 HOH A 5 311 8 HOH HOH . D 4 HOH A 6 312 9 HOH HOH . D 4 HOH A 7 313 10 HOH HOH . D 4 HOH A 8 314 11 HOH HOH . D 4 HOH A 9 315 12 HOH HOH . D 4 HOH A 10 316 13 HOH HOH . D 4 HOH A 11 317 14 HOH HOH . D 4 HOH A 12 318 15 HOH HOH . D 4 HOH A 13 319 16 HOH HOH . D 4 HOH A 14 320 17 HOH HOH . D 4 HOH A 15 321 18 HOH HOH . D 4 HOH A 16 322 19 HOH HOH . D 4 HOH A 17 323 21 HOH HOH . D 4 HOH A 18 324 22 HOH HOH . D 4 HOH A 19 325 23 HOH HOH . D 4 HOH A 20 326 24 HOH HOH . D 4 HOH A 21 327 25 HOH HOH . D 4 HOH A 22 328 26 HOH HOH . D 4 HOH A 23 329 27 HOH HOH . D 4 HOH A 24 330 28 HOH HOH . D 4 HOH A 25 331 29 HOH HOH . D 4 HOH A 26 332 30 HOH HOH . D 4 HOH A 27 333 31 HOH HOH . D 4 HOH A 28 334 32 HOH HOH . D 4 HOH A 29 335 33 HOH HOH . D 4 HOH A 30 336 34 HOH HOH . D 4 HOH A 31 337 36 HOH HOH . D 4 HOH A 32 338 39 HOH HOH . D 4 HOH A 33 339 41 HOH HOH . D 4 HOH A 34 340 44 HOH HOH . D 4 HOH A 35 341 45 HOH HOH . D 4 HOH A 36 342 46 HOH HOH . D 4 HOH A 37 343 47 HOH HOH . D 4 HOH A 38 344 49 HOH HOH . D 4 HOH A 39 345 56 HOH HOH . D 4 HOH A 40 346 57 HOH HOH . D 4 HOH A 41 347 59 HOH HOH . D 4 HOH A 42 348 61 HOH HOH . D 4 HOH A 43 349 63 HOH HOH . D 4 HOH A 44 350 64 HOH HOH . D 4 HOH A 45 351 65 HOH HOH . D 4 HOH A 46 352 66 HOH HOH . D 4 HOH A 47 353 73 HOH HOH . D 4 HOH A 48 354 74 HOH HOH . D 4 HOH A 49 355 92 HOH HOH . D 4 HOH A 50 356 94 HOH HOH . D 4 HOH A 51 357 95 HOH HOH . D 4 HOH A 52 358 97 HOH HOH . D 4 HOH A 53 359 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 1.663 _atom_site.Cartn_y -5.759 _atom_site.Cartn_z 20.634 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #