data_2P6F
#
_model_server_result.job_id            RfbE6r6kdPKae5lyptdtBw 
_model_server_result.datetime_utc      '2024-11-27 18:58:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p6f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":704}' 
#
_entry.id    2P6F 
#
_exptl.entry_id    2P6F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.418 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.46 
_cell.angle_gamma         90 
_cell.entry_id            2P6F 
_cell.length_a            188.76 
_cell.length_b            151.492 
_cell.length_c            133.939 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P6F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,H 1 1 
B,I,J 2 1 
C,K,L 3 1 
D,M,N 4 1 
E,O,P 5 1 
F,Q,R 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C17 H12 N2 O4 S2' 
_chem_comp.formula_weight    372.418 
_chem_comp.id                GN8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAA CAU GN8 doub 129 n n 
CAU NAX GN8 sing 130 n n 
CAU CAW GN8 sing 131 n n 
CAW CAF GN8 doub 132 n n 
CAW SAP GN8 sing 133 n n 
CAF CAR GN8 sing 134 n n 
CAF HAF GN8 sing 135 n n 
CAR CAQ GN8 doub 136 n n 
CAR CAK GN8 sing 137 n n 
CAQ OAC GN8 sing 138 n n 
CAQ CAT GN8 sing 139 n n 
OAC HAC GN8 sing 140 n n 
CAT CAN GN8 doub 141 n n 
CAT NAY GN8 sing 142 n n 
NAY OAD GN8 doub 143 n n 
NAY OAB GN8 sing 144 n n 
CAN CAJ GN8 sing 145 n n 
CAN HAN GN8 sing 146 n n 
CAJ CAK GN8 doub 147 n n 
CAJ HAJ GN8 sing 148 n n 
CAK HAK GN8 sing 149 n n 
SAP CAV GN8 sing 150 n n 
CAV SAE GN8 doub 151 n n 
CAV NAX GN8 sing 152 n n 
NAX CAO GN8 sing 153 n n 
CAO CAS GN8 sing 154 n n 
CAO HAO1 GN8 sing 155 n n 
CAO HAO2 GN8 sing 156 n n 
CAS CAM GN8 doub 157 n n 
CAS CAL GN8 sing 158 n n 
CAL CAH GN8 doub 159 n n 
CAL HAL GN8 sing 160 n n 
CAM CAI GN8 sing 161 n n 
CAM HAM GN8 sing 162 n n 
CAI CAG GN8 doub 163 n n 
CAI HAI GN8 sing 164 n n 
CAG CAH GN8 sing 165 n n 
CAG HAG GN8 sing 166 n n 
CAH HAH GN8 sing 167 n n 
#
_atom_sites.entry_id                     2P6F 
_atom_sites.fract_transf_matrix[1][1]    0.005298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001666 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006601 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007827 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 MYA A 1 601 601 MYA MYA . 
H 3 GN8 A 1 701 701 GN8 GN8 . 
I 2 MYA B 1 602 602 MYA MYA . 
J 3 GN8 B 1 702 702 GN8 GN8 . 
K 2 MYA C 1 603 603 MYA MYA . 
L 3 GN8 C 1 703 703 GN8 GN8 . 
M 2 MYA D 1 604 604 MYA MYA . 
N 3 GN8 D 1 704 704 GN8 GN8 . 
O 2 MYA E 1 605 605 MYA MYA . 
P 3 GN8 E 1 705 705 GN8 GN8 . 
Q 2 MYA F 1 606 606 MYA MYA . 
R 3 GN8 F 1 706 706 GN8 GN8 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA GN8 . . . N 3 22.182 -1.174 -5.926 1 78.76 ? OAA GN8 704 D 1 
HETATM 2 C CAU GN8 . . . N 3 23.104 -1.947 -6.392 1 77.79 ? CAU GN8 704 D 1 
HETATM 3 C CAW GN8 . . . N 3 24.055 -1.45 -7.276 1 76.66 ? CAW GN8 704 D 1 
HETATM 4 C CAF GN8 . . . N 3 24.174 -0.057 -7.8 1 63.94 ? CAF GN8 704 D 1 
HETATM 5 C CAR GN8 . . . N 3 25.207 0.452 -8.749 1 67.9 ? CAR GN8 704 D 1 
HETATM 6 C CAQ GN8 . . . N 3 25.163 1.795 -9.137 1 60.3 ? CAQ GN8 704 D 1 
HETATM 7 O OAC GN8 . . . N 3 24.183 2.607 -8.638 1 60.76 ? OAC GN8 704 D 1 
HETATM 8 C CAT GN8 . . . N 3 26.113 2.313 -10.025 1 59.26 ? CAT GN8 704 D 1 
HETATM 9 N NAY GN8 . . . N 3 26.088 3.626 -10.411 1 59.5 ? NAY GN8 704 D 1 
HETATM 10 O OAD GN8 . . . N 3 25.113 4.506 -9.939 1 60.42 ? OAD GN8 704 D 1 
HETATM 11 O OAB GN8 . . . N 3 27.049 4.115 -11.297 1 59.32 ? OAB GN8 704 D 1 
HETATM 12 C CAN GN8 . . . N 3 27.111 1.467 -10.525 1 60.38 ? CAN GN8 704 D 1 
HETATM 13 C CAJ GN8 . . . N 3 27.162 0.125 -10.147 1 60.82 ? CAJ GN8 704 D 1 
HETATM 14 C CAK GN8 . . . N 3 26.21 -0.377 -9.261 1 59.65 ? CAK GN8 704 D 1 
HETATM 15 S SAP GN8 . . . N 3 25.17 -2.696 -7.747 1 78.02 ? SAP GN8 704 D 1 
HETATM 16 C CAV GN8 . . . N 3 24.249 -3.759 -6.709 1 76.54 ? CAV GN8 704 D 1 
HETATM 17 S SAE GN8 . . . N 3 24.807 -5.44 -6.61 1 77.12 ? SAE GN8 704 D 1 
HETATM 18 N NAX GN8 . . . N 3 23.173 -3.252 -6.047 1 77.86 ? NAX GN8 704 D 1 
HETATM 19 C CAO GN8 . . . N 3 22.218 -3.882 -5.107 1 72.99 ? CAO GN8 704 D 1 
HETATM 20 C CAS GN8 . . . N 3 22.056 -5.391 -5.12 1 73.47 ? CAS GN8 704 D 1 
HETATM 21 C CAL GN8 . . . N 3 21.439 -6.036 -6.198 1 69.9 ? CAL GN8 704 D 1 
HETATM 22 C CAM GN8 . . . N 3 22.498 -6.145 -4.024 1 69.63 ? CAM GN8 704 D 1 
HETATM 23 C CAI GN8 . . . N 3 22.348 -7.533 -4.018 1 68.51 ? CAI GN8 704 D 1 
HETATM 24 C CAG GN8 . . . N 3 21.742 -8.175 -5.101 1 70.81 ? CAG GN8 704 D 1 
HETATM 25 C CAH GN8 . . . N 3 21.289 -7.425 -6.191 1 68.37 ? CAH GN8 704 D 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#