data_2P7Q
#
_model_server_result.job_id            PydEsn0kwvdDdDJ8r9q5yw 
_model_server_result.datetime_utc      '2025-02-28 03:18:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p7q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1002}' 
#
_entry.id    2P7Q 
#
_exptl.entry_id    2P7Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              156.074 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.86 
_cell.angle_gamma         90 
_cell.entry_id            2P7Q 
_cell.length_a            169.011 
_cell.length_b            69.447 
_cell.length_c            83.971 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P7Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA hexameric 6 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,S,T 1 1 
C,D,K,L,M,N,U,V 2 1 
E,F,O,P,Q,R,W,X 3 1 
A,B,G,H,I,J,S,T 4 1 
C,D,K,L,M,N,U,V 4 2 
E,F,O,P,Q,R,W,X 4 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_546 x+1/2,y-1/2,z+1 1 0 0 0 1 0 0 0 1 50.53896 -34.7235 76.794551 
3 'crystal symmetry operation' 4_546 -x+1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 50.53896 -34.7235 76.794551 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 7 A HIS 7 1_555 I MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc2 A NE2 HIS 69 A HIS 69 1_555 G MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc3 A OH TYR 108 A TYR 108 1_555 G MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc4 A OE1 GLU 118 A GLU 118 1_555 G MN MN . A MN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc5 G MN MN . A MN 2001 1_555 H O1 GG6 . A GG6 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc6 G MN MN . A MN 2001 1_555 H O5 GG6 . A GG6 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc7 G MN MN . A MN 2001 1_555 B NE2 HIS 7 B HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc8 B NE2 HIS 69 B HIS 69 1_555 I MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc9 B OE1 GLU 118 B GLU 118 1_555 I MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc10 I MN MN . B MN 1001 1_555 J O1 GG6 . B GG6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc11 I MN MN . B MN 1001 1_555 J O5 GG6 . B GG6 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc12 C NE2 HIS 7 C HIS 7 1_555 M MN MN . D MN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc13 C NE2 HIS 69 C HIS 69 1_555 K MN MN . C MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc14 C OE1 GLU 118 C GLU 118 1_555 K MN MN . C MN 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc15 K MN MN . C MN 4001 1_555 L O1 GG6 . C GG6 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc16 K MN MN . C MN 4001 1_555 L O5 GG6 . C GG6 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc17 K MN MN . C MN 4001 1_555 D NE2 HIS 7 D HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc18 D NE2 HIS 69 D HIS 69 1_555 M MN MN . D MN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc19 D OE1 GLU 118 D GLU 118 1_555 M MN MN . D MN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc20 M MN MN . D MN 3001 1_555 N O1 GG6 . D GG6 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc21 M MN MN . D MN 3001 1_555 N O5 GG6 . D GG6 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
metalc ? metalc22 E NE2 HIS 7 E HIS 7 1_555 Q MN MN . F MN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc23 E NE2 HIS 69 E HIS 69 1_555 O MN MN . E MN 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc24 E OE1 GLU 118 E GLU 118 1_555 O MN MN . E MN 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc25 O MN MN . E MN 6001 1_555 P O5 GG6 . E GG6 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc26 O MN MN . E MN 6001 1_555 P O1 GG6 . E GG6 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc27 O MN MN . E MN 6001 1_555 F NE2 HIS 7 F HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc28 F NE2 HIS 69 F HIS 69 1_555 Q MN MN . F MN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc29 F OE1 GLU 118 F GLU 118 1_555 Q MN MN . F MN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc30 Q MN MN . F MN 5001 1_555 R O5 GG6 . F GG6 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc31 Q MN MN . F MN 5001 1_555 R O1 GG6 . F GG6 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
#
_chem_comp.formula           'C3 H9 O5 P' 
_chem_comp.formula_weight    156.074 
_chem_comp.id                GG6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 GG6 sing 83 n n 
O1 HO1 GG6 sing 84 n n 
C2 C3 GG6 sing 85 n n 
C2 C1 GG6 sing 86 n n 
C2 H2 GG6 sing 87 n n 
C3 H31 GG6 sing 88 n n 
C3 H32 GG6 sing 89 n n 
C3 H33 GG6 sing 90 n n 
C1 O2 GG6 sing 91 n n 
C1 P GG6 sing 92 n n 
C1 H1 GG6 sing 93 n n 
O2 HO2 GG6 sing 94 n n 
P O3 GG6 doub 95 n n 
P O4 GG6 sing 96 n n 
P O5 GG6 sing 97 n n 
O4 HO4 GG6 sing 98 n n 
O5 HO5 GG6 sing 99 n n 
#
_atom_sites.entry_id                     2P7Q 
_atom_sites.fract_transf_matrix[1][1]    0.005917 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002617 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014399 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 MN A 1 2001 2001 MN MN . 
H 3 GG6 A 1 2002 20 GG6 GG6 . 
I 2 MN B 1 1001 1001 MN MN . 
J 3 GG6 B 1 1002 10 GG6 GG6 . 
K 2 MN C 1 4001 4001 MN MN . 
L 3 GG6 C 1 4002 40 GG6 GG6 . 
M 2 MN D 1 3001 3001 MN MN . 
N 3 GG6 D 1 3002 30 GG6 GG6 . 
O 2 MN E 1 6001 6001 MN MN . 
P 3 GG6 E 1 6002 60 GG6 GG6 . 
Q 2 MN F 1 5001 5001 MN MN . 
R 3 GG6 F 1 5002 50 GG6 GG6 . 
S 4 HOH A 1 6006 5 HOH HOH . 
S 4 HOH A 2 6007 6 HOH HOH . 
S 4 HOH A 3 6010 9 HOH HOH . 
S 4 HOH A 4 6024 23 HOH HOH . 
S 4 HOH A 5 6025 24 HOH HOH . 
S 4 HOH A 6 6037 36 HOH HOH . 
S 4 HOH A 7 6073 72 HOH HOH . 
S 4 HOH A 8 6077 76 HOH HOH . 
S 4 HOH A 9 6078 77 HOH HOH . 
S 4 HOH A 10 6080 79 HOH HOH . 
S 4 HOH A 11 6086 85 HOH HOH . 
S 4 HOH A 12 6087 86 HOH HOH . 
T 4 HOH B 1 6013 12 HOH HOH . 
T 4 HOH B 2 6016 15 HOH HOH . 
T 4 HOH B 3 6026 25 HOH HOH . 
T 4 HOH B 4 6042 41 HOH HOH . 
T 4 HOH B 5 6045 44 HOH HOH . 
T 4 HOH B 6 6046 45 HOH HOH . 
T 4 HOH B 7 6047 46 HOH HOH . 
T 4 HOH B 8 6054 53 HOH HOH . 
T 4 HOH B 9 6065 64 HOH HOH . 
T 4 HOH B 10 6067 66 HOH HOH . 
T 4 HOH B 11 6069 68 HOH HOH . 
T 4 HOH B 12 6079 78 HOH HOH . 
T 4 HOH B 13 6082 81 HOH HOH . 
T 4 HOH B 14 6088 87 HOH HOH . 
T 4 HOH B 15 6092 91 HOH HOH . 
U 4 HOH C 1 6005 4 HOH HOH . 
U 4 HOH C 2 6009 8 HOH HOH . 
U 4 HOH C 3 6012 11 HOH HOH . 
U 4 HOH C 4 6015 14 HOH HOH . 
U 4 HOH C 5 6018 17 HOH HOH . 
U 4 HOH C 6 6019 18 HOH HOH . 
U 4 HOH C 7 6022 21 HOH HOH . 
U 4 HOH C 8 6028 27 HOH HOH . 
U 4 HOH C 9 6031 30 HOH HOH . 
U 4 HOH C 10 6040 39 HOH HOH . 
U 4 HOH C 11 6044 43 HOH HOH . 
U 4 HOH C 12 6061 60 HOH HOH . 
U 4 HOH C 13 6062 61 HOH HOH . 
U 4 HOH C 14 6063 62 HOH HOH . 
U 4 HOH C 15 6074 73 HOH HOH . 
U 4 HOH C 16 6083 82 HOH HOH . 
U 4 HOH C 17 6084 83 HOH HOH . 
U 4 HOH C 18 6089 88 HOH HOH . 
U 4 HOH C 19 6090 89 HOH HOH . 
U 4 HOH C 20 6091 90 HOH HOH . 
V 4 HOH D 1 6008 7 HOH HOH . 
V 4 HOH D 2 6011 10 HOH HOH . 
V 4 HOH D 3 6014 13 HOH HOH . 
V 4 HOH D 4 6038 37 HOH HOH . 
V 4 HOH D 5 6043 42 HOH HOH . 
V 4 HOH D 6 6050 49 HOH HOH . 
V 4 HOH D 7 6058 57 HOH HOH . 
V 4 HOH D 8 6059 58 HOH HOH . 
V 4 HOH D 9 6068 67 HOH HOH . 
V 4 HOH D 10 6072 71 HOH HOH . 
V 4 HOH D 11 6085 84 HOH HOH . 
W 4 HOH E 1 6003 1 HOH HOH . 
W 4 HOH E 2 6004 3 HOH HOH . 
W 4 HOH E 3 6005 16 HOH HOH . 
W 4 HOH E 4 6006 19 HOH HOH . 
W 4 HOH E 5 6007 20 HOH HOH . 
W 4 HOH E 6 6008 22 HOH HOH . 
W 4 HOH E 7 6009 26 HOH HOH . 
W 4 HOH E 8 6010 28 HOH HOH . 
W 4 HOH E 9 6011 29 HOH HOH . 
W 4 HOH E 10 6012 31 HOH HOH . 
W 4 HOH E 11 6013 33 HOH HOH . 
W 4 HOH E 12 6014 34 HOH HOH . 
W 4 HOH E 13 6015 35 HOH HOH . 
W 4 HOH E 14 6016 38 HOH HOH . 
W 4 HOH E 15 6017 40 HOH HOH . 
W 4 HOH E 16 6018 50 HOH HOH . 
W 4 HOH E 17 6019 51 HOH HOH . 
W 4 HOH E 18 6020 52 HOH HOH . 
W 4 HOH E 19 6021 54 HOH HOH . 
W 4 HOH E 20 6022 55 HOH HOH . 
W 4 HOH E 21 6023 56 HOH HOH . 
W 4 HOH E 22 6024 63 HOH HOH . 
W 4 HOH E 23 6025 65 HOH HOH . 
W 4 HOH E 24 6026 69 HOH HOH . 
W 4 HOH E 25 6027 74 HOH HOH . 
W 4 HOH E 26 6028 80 HOH HOH . 
X 4 HOH F 1 6003 2 HOH HOH . 
X 4 HOH F 2 6033 32 HOH HOH . 
X 4 HOH F 3 6048 47 HOH HOH . 
X 4 HOH F 4 6049 48 HOH HOH . 
X 4 HOH F 5 6060 59 HOH HOH . 
X 4 HOH F 6 6071 70 HOH HOH . 
X 4 HOH F 7 6076 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 GG6 . . . J 3 55.445 -10.384 19.366 1 29.81 ? O1 GG6 1002 B 1 
HETATM 2 C C2 GG6 . . . J 3 55.541 -10.234 17.938 1 45.44 ? C2 GG6 1002 B 1 
HETATM 3 C C3 GG6 . . . J 3 56.936 -10.747 17.457 1 41.27 ? C3 GG6 1002 B 1 
HETATM 4 C C1 GG6 . . . J 3 54.414 -11.037 17.197 1 47.33 ? C1 GG6 1002 B 1 
HETATM 5 O O2 GG6 . . . J 3 54.472 -12.461 17.401 1 55.24 ? O2 GG6 1002 B 1 
HETATM 6 P P GG6 . . . J 3 52.769 -10.501 17.641 1 29.56 ? P GG6 1002 B 1 
HETATM 7 O O3 GG6 . . . J 3 52.678 -8.932 17.461 1 40.53 ? O3 GG6 1002 B 1 
HETATM 8 O O4 GG6 . . . J 3 51.848 -11.141 16.736 1 51.98 ? O4 GG6 1002 B 1 
HETATM 9 O O5 GG6 . . . J 3 52.401 -10.89 19.117 1 37.61 ? O5 GG6 1002 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#